BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G21270.3 Length=1547 Score E Sequences producing significant alignments: (Bits) Value Ahg480987 jgi|Araly1|480987|fgenesh2_kg.4__47__AT2G21270.1 1919 0.0 Ahg490659 jgi|Araly1|490659|fgenesh2_kg.7__92__AT4G38930.2 750 0.0 > Ahg480987 jgi|Araly1|480987|fgenesh2_kg.4__47__AT2G21270.1 Length=1244 Score = 1919 bits (1039), Expect = 0.0 Identities = 1145/1196 (96%), Gaps = 7/1196 (1%) Strand=Plus/Plus Query 292 GTTGCCATTTGTTAACTTACTCTGTTAGTCTACTACCACCAATAACTATGTTTTTCGATG 351 ||||||||| ||||||||| ||| || || |||||||||||||||||||||||||||||| Sbjct 52 GTTGCCATTCGTTAACTTAATCTTTTTGTGTACTACCACCAATAACTATGTTTTTCGATG 111 Query 352 GATACCATTATCATGGAACAACCTTTGAGCAGAGTTACCGGTGTTATCCGGCATCTTTTA 411 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 112 GATACCATTATCATGGAACAACCTTTGAGCAGAGTTATCGGTGTTATCCGGCATCTTTTA 171 Query 412 TCGACAAGCCACAACTTGAAAGTGGTGACAAGATTATAATGCCACCATCAGCCCTTGATC 471 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 172 TCGACAAGCCACAAATTGAAAGTGGTGACAAGATTATAATGCCACCATCAGCCCTTGATC 231 Query 472 GTCTAGCCTCTTTGCATATTGACTATCCGATGCTGTTTGAGCTTCGTAATGCTGGAATTG 531 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 232 GTCTAGCCTCTTTGCATATTGACTATCCGATGCTGTTTGAGGTTCGTAATGCTGGAATTG 291 Query 532 AACGTGTTACACACTGTGGAGTCCTTGAGTTCATTGCAGAAGAAGGCATGATTTACATGC 591 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 AACGTGTTACGCACTGTGGAGTCCTTGAGTTCATTGCAGAAGAAGGCATGATTTACATGC 351 Query 592 CATATTGGATGATGCAGAATCTGCTGCTGCAAGAAGGAGACATTGTGAGAGTTAGAAATG 651 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 352 CATATTGGATGATGCAAAATCTGCTGTTGCAAGAAGGAGACATTGTGAGAGTTAGAAATG 411 Query 652 TCACTCTTCCAAAGGGAACTTACGTTAAACTACAGCCCCACACAACAGACTTCCTGGATA 711 |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 412 TCACTCTTCCTAAGGGAACTTACGTTAAATTACAGCCCCACACAACAGACTTCCTGGATA 471 Query 712 TATCCAACCCGAAAGCCATCTTGGAGACTGCTTTGAGAAATTATTCATGCCTAACTAGTG 771 |||||||||||||||||||||||||||||||||||||||||||||||||||| || | || Sbjct 472 TATCCAACCCGAAAGCCATCTTGGAGACTGCTTTGAGAAATTATTCATGCCTTACCACTG 531 Query 772 GGGATAGCATTATGGTTCCATACAACAATAAGAAGTACTTCATAGATATAGTTGAAACAA 831 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 532 GGGATAGCATTATGGTTCCATACAACAATAAGAAGTACTTCATAGATATAGTTGAAACAA 591 Query 832 AGCCTGCTAACGCAATCAGCATCATAGAAACAGACTGTGAGGTTGATTTCGCACCTCCCC 891 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 592 AGCCTGCTAACGCAATCAGCATCATCGAAACAGACTGTGAAGTTGATTTCGCACCTCCCC 651 Query 892 TCGATTACAAGGAGCCTGAACGTCCCACAGCACCTTCTGCAGCTAAGGGTCCGGCAAAAG 951 | |||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||| Sbjct 652 TTGATTACAAGGAGCCTGAACGTCCCACTGCACCTGCTGCAGCTAAGGGTCCAGCAAAAG 711 Query 952 CTGAGGAGGTTGTGGATGAACCTGAACCAAAGTTCAACCCTTTCACCGGATCTGGAAGAC 1011 ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 712 CTGAGGAGGTTGTGGCTGAACCTGAACCAAAGTTCAACCCTTTCACGGGATCTGGAAGAC 771 Query 1012 GGTTAGATGGGAGACCTCTTGCCTATGAGCCAGCGCCAGCCTCTAGCTCAAAAGGCAAAC 1071 ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 772 GGTTAGATGGGAGACCTCTTGCCTATGAGCCGGCGCCAGCCTCTAGCTCAAAAGACAAAC 831 Query 1072 AACCTGTTGTCGCTAATGGTAATGGACAGTCATCTGTAGCAAGTAGCTCAGAGAAAGCTA 1131 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 832 AGCCTGTTGTCGCTAATGGTAATGGACAGTCATCTGTAGCAAGTAGCTCAGAGAAAGCTA 891 Query 1132 CACGAGCTCAGGGAAAGCTTGTATTTGGGGCTAACGGAAACCGTGCTCCAAAAGAAGCTG 1191 | ||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| Sbjct 892 CGCGAGCTCAGGGAAAGCTTGTATTTGGGGCCAACGCAAACCGTGTTCCAAAAGAAGCTG 951 Query 1192 CTCCGAAAGTTGGAGCTGCAAAAGAGACAAAGAAAGAGGAACAAGAGAAGAAAGACGAGC 1251 |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 952 CTCCTAAAGTTGGAGCTGCAAAAGAGACAAAGCAAGAGGAACAGGAGAAGAAAGACGAGC 1011 Query 1252 CCAAGTTTCAAGCTTTCTCTGGGAAGAAGTATTCATTGAGGGGTTGATCAACTCACACAA 1311 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1012 CCAAGTTTCAAGCTTTCTCTGGGAAGAAGTATTCATTGAGGGGTTGATCAACTCAGACAA 1071 Query 1312 TGGGTCTACTCAGTCTATTTATGA-CCTCTCATGTTGTGTACTA-A-AAATAC-AAGGAA 1367 | ||||| |||||||||||||||| ||||||||||||||||||| | ||| || ||| || Sbjct 1072 TCGGTCTGCTCAGTCTATTTATGATCCTCTCATGTTGTGTACTATATAAAGACTAAG-AA 1130 Query 1368 AACAAATAAGTGAATAAATCTCTGGCTCCTCTTGACGCGGCTTGTTTTCTTTATCAGATT 1427 ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 1131 AACAAATAAGTGAATAAATCTCTGGCTTGTCTTGACGAGGCTTGTTTTCTTTATCAGATT 1190 Query 1428 CAATGCAACTTTCTACAATTCTCTGCTCTTTTATATTCTTACTGTAGGATATAAGA 1483 | |||||||||||||||||||||||||||||||| |||||||| ||||||| ||| Sbjct 1191 -A-TGCAACTTTCTACAATTCTCTGCTCTTTTATAATCTTACTGCAGGATATTAGA 1244 > Ahg490659 jgi|Araly1|490659|fgenesh2_kg.7__92__AT4G38930.2 Length=1022 Score = 750 bits (406), Expect = 0.0 Identities = 614/713 (86%), Gaps = 19/713 (3%) Strand=Plus/Plus Query 338 TATGTTTTTCGATGGATAC-CATTATCATGGAACAACCTTTGAGCAGAGTTACCGGTGTT 396 |||||||| |||||||||| | |||||| |||| ||||||||||||| ||||||||||| Sbjct 75 TATGTTTTACGATGGATACGC-GTATCATAGAACTACCTTTGAGCAGACTTACCGGTGTT 133 Query 397 ATCCGGC-ATCTTTTATCGACAAGCCACA-ACTTGAAAGTGGTGACAAGATTATAATGCC 454 |||| | | | ||||| || ||||| || | |||||||||||| ||||||||||||||| Sbjct 134 ATCCCTCAAGC-TTTATTGATAAGCCTCAGA-TTGAAAGTGGTGGCAAGATTATAATGCC 191 Query 455 ACCATCAGCCCTTGATCGTCTAGCCTCTTTGCATATTGACTATCCGATGCTGTTTGAGCT 514 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 192 ACCATCAGCCCTTGATCGTCTAGCCTCTTTGCATATCGATTATCCGATGCTGTTTGAGCT 251 Query 515 TCGTAATGCTGGAATTGA-ACGTGTTACACACTGTGGAGTCCTTGAGTTCATTGCAGAAG 573 |||||||||| || || | ||||| | ||||| ||||||||||||||||| ||||||| Sbjct 252 TCGTAATGCTTCAACGGATA-GTGTTTCTCACTGCGGAGTCCTTGAGTTCATCGCAGAAG 310 Query 574 AAGGCATGATTTACATGCCATATTGGATGATGCAGAATCT-GCTGCTGCAAGAAGGAGAC 632 ||||| ||||||||||||| || |||||||||||||| || |||| |||||||||||||| Sbjct 311 AAGGCGTGATTTACATGCCCTACTGGATGATGCAGAA-CTTGCTGTTGCAAGAAGGAGAC 369 Query 633 ATTGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACTTACGTTAAACTACAGCCCCAC 692 |||||||||||||||||||||||||||||||||||||| || || |||||||| |||||| Sbjct 370 ATTGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACCTATGTGAAACTACAACCCCAC 429 Query 693 ACAACAGACTTCCTGGATATATCCAACCCGAAAGCCATCTTGGAGACTGCTTTGAGAAAT 752 ||||||||||| || |||||| | ||||||||||||||||| ||||| || ||||| || Sbjct 430 ACAACAGACTTTCTCGATATAGCTAACCCGAAAGCCATCTTAGAGACCGCATTGAGGAAC 489 Query 753 TATTCATGCCTAACTAGTGGG-GATAGCATTATGGTTCCATACAACAATAAGAAGTACTT 811 |||||||| |||||| || || |||||||||||||| ||||||||||||||||| ||||| Sbjct 490 TATTCATGTCTAACT-GTCGGAGATAGCATTATGGTCCCATACAACAATAAGAAATACTT 548 Query 812 CATAGATATAGTTGAAACAAAGCCTGCTAACGCAATCAGCATCATAGAAACAGACTGTGA 871 |||||||||| | || |||||||| |||| | ||||||||||| ||||| || ||||| Sbjct 549 CATAGATATACTGGAGGCAAAGCCTTCTAATGGTATCAGCATCATTGAAACTGATTGTGA 608 Query 872 GGTTGATTTCGCACCTCCCCTCGATTACAAGGAGCCTGAACGTCCCACAGCACCTTCTGC 931 |||||||||||| |||||||| ||||||||||| || ||||| || || |||| || | Sbjct 609 GGTTGATTTCGCTCCTCCCCTTGATTACAAGGAACCCGAACGACCTGTAGTACCTGCTTC 668 Query 932 AGCTAAGGGTCCGGCAAAAGCTGAGGAGGTTG-TG-GA-TGAACCTGAACCAAAGTTCAA 988 |||||| |||| ||||||||| | ||||||| || | |||| | ||||||||||| || Sbjct 669 AGCTAAAGGTCAAGCAAAAGCTAATGAGGTTGCTGTGGCTGAAGCAGAACCAAAGTTTAA 728 Query 989 CCCTTTCACCGGATCTGGAAGACGGTTAGATGGGA-GACCTCT-TGCCTATGA 1039 ||||||||| || || |||||||| || ||||| | ||||| | | ||||||| Sbjct 729 CCCTTTCACGGGTTCGGGAAGACGTTTGGATGG-ACGACCTTTAT-CCTATGA 779 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57935262645 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5