BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21270.3
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480987 jgi|Araly1|480987|fgenesh2_kg.4__47__AT2G21270.1 1919 0.0
Ahg490659 jgi|Araly1|490659|fgenesh2_kg.7__92__AT4G38930.2 750 0.0
> Ahg480987 jgi|Araly1|480987|fgenesh2_kg.4__47__AT2G21270.1
Length=1244
Score = 1919 bits (1039), Expect = 0.0
Identities = 1145/1196 (96%), Gaps = 7/1196 (1%)
Strand=Plus/Plus
Query 292 GTTGCCATTTGTTAACTTACTCTGTTAGTCTACTACCACCAATAACTATGTTTTTCGATG 351
||||||||| ||||||||| ||| || || ||||||||||||||||||||||||||||||
Sbjct 52 GTTGCCATTCGTTAACTTAATCTTTTTGTGTACTACCACCAATAACTATGTTTTTCGATG 111
Query 352 GATACCATTATCATGGAACAACCTTTGAGCAGAGTTACCGGTGTTATCCGGCATCTTTTA 411
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 112 GATACCATTATCATGGAACAACCTTTGAGCAGAGTTATCGGTGTTATCCGGCATCTTTTA 171
Query 412 TCGACAAGCCACAACTTGAAAGTGGTGACAAGATTATAATGCCACCATCAGCCCTTGATC 471
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TCGACAAGCCACAAATTGAAAGTGGTGACAAGATTATAATGCCACCATCAGCCCTTGATC 231
Query 472 GTCTAGCCTCTTTGCATATTGACTATCCGATGCTGTTTGAGCTTCGTAATGCTGGAATTG 531
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 232 GTCTAGCCTCTTTGCATATTGACTATCCGATGCTGTTTGAGGTTCGTAATGCTGGAATTG 291
Query 532 AACGTGTTACACACTGTGGAGTCCTTGAGTTCATTGCAGAAGAAGGCATGATTTACATGC 591
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 AACGTGTTACGCACTGTGGAGTCCTTGAGTTCATTGCAGAAGAAGGCATGATTTACATGC 351
Query 592 CATATTGGATGATGCAGAATCTGCTGCTGCAAGAAGGAGACATTGTGAGAGTTAGAAATG 651
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 352 CATATTGGATGATGCAAAATCTGCTGTTGCAAGAAGGAGACATTGTGAGAGTTAGAAATG 411
Query 652 TCACTCTTCCAAAGGGAACTTACGTTAAACTACAGCCCCACACAACAGACTTCCTGGATA 711
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 412 TCACTCTTCCTAAGGGAACTTACGTTAAATTACAGCCCCACACAACAGACTTCCTGGATA 471
Query 712 TATCCAACCCGAAAGCCATCTTGGAGACTGCTTTGAGAAATTATTCATGCCTAACTAGTG 771
|||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 472 TATCCAACCCGAAAGCCATCTTGGAGACTGCTTTGAGAAATTATTCATGCCTTACCACTG 531
Query 772 GGGATAGCATTATGGTTCCATACAACAATAAGAAGTACTTCATAGATATAGTTGAAACAA 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GGGATAGCATTATGGTTCCATACAACAATAAGAAGTACTTCATAGATATAGTTGAAACAA 591
Query 832 AGCCTGCTAACGCAATCAGCATCATAGAAACAGACTGTGAGGTTGATTTCGCACCTCCCC 891
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 592 AGCCTGCTAACGCAATCAGCATCATCGAAACAGACTGTGAAGTTGATTTCGCACCTCCCC 651
Query 892 TCGATTACAAGGAGCCTGAACGTCCCACAGCACCTTCTGCAGCTAAGGGTCCGGCAAAAG 951
| |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||
Sbjct 652 TTGATTACAAGGAGCCTGAACGTCCCACTGCACCTGCTGCAGCTAAGGGTCCAGCAAAAG 711
Query 952 CTGAGGAGGTTGTGGATGAACCTGAACCAAAGTTCAACCCTTTCACCGGATCTGGAAGAC 1011
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 712 CTGAGGAGGTTGTGGCTGAACCTGAACCAAAGTTCAACCCTTTCACGGGATCTGGAAGAC 771
Query 1012 GGTTAGATGGGAGACCTCTTGCCTATGAGCCAGCGCCAGCCTCTAGCTCAAAAGGCAAAC 1071
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 772 GGTTAGATGGGAGACCTCTTGCCTATGAGCCGGCGCCAGCCTCTAGCTCAAAAGACAAAC 831
Query 1072 AACCTGTTGTCGCTAATGGTAATGGACAGTCATCTGTAGCAAGTAGCTCAGAGAAAGCTA 1131
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AGCCTGTTGTCGCTAATGGTAATGGACAGTCATCTGTAGCAAGTAGCTCAGAGAAAGCTA 891
Query 1132 CACGAGCTCAGGGAAAGCTTGTATTTGGGGCTAACGGAAACCGTGCTCCAAAAGAAGCTG 1191
| ||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||
Sbjct 892 CGCGAGCTCAGGGAAAGCTTGTATTTGGGGCCAACGCAAACCGTGTTCCAAAAGAAGCTG 951
Query 1192 CTCCGAAAGTTGGAGCTGCAAAAGAGACAAAGAAAGAGGAACAAGAGAAGAAAGACGAGC 1251
|||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 952 CTCCTAAAGTTGGAGCTGCAAAAGAGACAAAGCAAGAGGAACAGGAGAAGAAAGACGAGC 1011
Query 1252 CCAAGTTTCAAGCTTTCTCTGGGAAGAAGTATTCATTGAGGGGTTGATCAACTCACACAA 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1012 CCAAGTTTCAAGCTTTCTCTGGGAAGAAGTATTCATTGAGGGGTTGATCAACTCAGACAA 1071
Query 1312 TGGGTCTACTCAGTCTATTTATGA-CCTCTCATGTTGTGTACTA-A-AAATAC-AAGGAA 1367
| ||||| |||||||||||||||| ||||||||||||||||||| | ||| || ||| ||
Sbjct 1072 TCGGTCTGCTCAGTCTATTTATGATCCTCTCATGTTGTGTACTATATAAAGACTAAG-AA 1130
Query 1368 AACAAATAAGTGAATAAATCTCTGGCTCCTCTTGACGCGGCTTGTTTTCTTTATCAGATT 1427
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1131 AACAAATAAGTGAATAAATCTCTGGCTTGTCTTGACGAGGCTTGTTTTCTTTATCAGATT 1190
Query 1428 CAATGCAACTTTCTACAATTCTCTGCTCTTTTATATTCTTACTGTAGGATATAAGA 1483
| |||||||||||||||||||||||||||||||| |||||||| ||||||| |||
Sbjct 1191 -A-TGCAACTTTCTACAATTCTCTGCTCTTTTATAATCTTACTGCAGGATATTAGA 1244
> Ahg490659 jgi|Araly1|490659|fgenesh2_kg.7__92__AT4G38930.2
Length=1022
Score = 750 bits (406), Expect = 0.0
Identities = 614/713 (86%), Gaps = 19/713 (3%)
Strand=Plus/Plus
Query 338 TATGTTTTTCGATGGATAC-CATTATCATGGAACAACCTTTGAGCAGAGTTACCGGTGTT 396
|||||||| |||||||||| | |||||| |||| ||||||||||||| |||||||||||
Sbjct 75 TATGTTTTACGATGGATACGC-GTATCATAGAACTACCTTTGAGCAGACTTACCGGTGTT 133
Query 397 ATCCGGC-ATCTTTTATCGACAAGCCACA-ACTTGAAAGTGGTGACAAGATTATAATGCC 454
|||| | | | ||||| || ||||| || | |||||||||||| |||||||||||||||
Sbjct 134 ATCCCTCAAGC-TTTATTGATAAGCCTCAGA-TTGAAAGTGGTGGCAAGATTATAATGCC 191
Query 455 ACCATCAGCCCTTGATCGTCTAGCCTCTTTGCATATTGACTATCCGATGCTGTTTGAGCT 514
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 192 ACCATCAGCCCTTGATCGTCTAGCCTCTTTGCATATCGATTATCCGATGCTGTTTGAGCT 251
Query 515 TCGTAATGCTGGAATTGA-ACGTGTTACACACTGTGGAGTCCTTGAGTTCATTGCAGAAG 573
|||||||||| || || | ||||| | ||||| ||||||||||||||||| |||||||
Sbjct 252 TCGTAATGCTTCAACGGATA-GTGTTTCTCACTGCGGAGTCCTTGAGTTCATCGCAGAAG 310
Query 574 AAGGCATGATTTACATGCCATATTGGATGATGCAGAATCT-GCTGCTGCAAGAAGGAGAC 632
||||| ||||||||||||| || |||||||||||||| || |||| ||||||||||||||
Sbjct 311 AAGGCGTGATTTACATGCCCTACTGGATGATGCAGAA-CTTGCTGTTGCAAGAAGGAGAC 369
Query 633 ATTGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACTTACGTTAAACTACAGCCCCAC 692
|||||||||||||||||||||||||||||||||||||| || || |||||||| ||||||
Sbjct 370 ATTGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACCTATGTGAAACTACAACCCCAC 429
Query 693 ACAACAGACTTCCTGGATATATCCAACCCGAAAGCCATCTTGGAGACTGCTTTGAGAAAT 752
||||||||||| || |||||| | ||||||||||||||||| ||||| || ||||| ||
Sbjct 430 ACAACAGACTTTCTCGATATAGCTAACCCGAAAGCCATCTTAGAGACCGCATTGAGGAAC 489
Query 753 TATTCATGCCTAACTAGTGGG-GATAGCATTATGGTTCCATACAACAATAAGAAGTACTT 811
|||||||| |||||| || || |||||||||||||| ||||||||||||||||| |||||
Sbjct 490 TATTCATGTCTAACT-GTCGGAGATAGCATTATGGTCCCATACAACAATAAGAAATACTT 548
Query 812 CATAGATATAGTTGAAACAAAGCCTGCTAACGCAATCAGCATCATAGAAACAGACTGTGA 871
|||||||||| | || |||||||| |||| | ||||||||||| ||||| || |||||
Sbjct 549 CATAGATATACTGGAGGCAAAGCCTTCTAATGGTATCAGCATCATTGAAACTGATTGTGA 608
Query 872 GGTTGATTTCGCACCTCCCCTCGATTACAAGGAGCCTGAACGTCCCACAGCACCTTCTGC 931
|||||||||||| |||||||| ||||||||||| || ||||| || || |||| || |
Sbjct 609 GGTTGATTTCGCTCCTCCCCTTGATTACAAGGAACCCGAACGACCTGTAGTACCTGCTTC 668
Query 932 AGCTAAGGGTCCGGCAAAAGCTGAGGAGGTTG-TG-GA-TGAACCTGAACCAAAGTTCAA 988
|||||| |||| ||||||||| | ||||||| || | |||| | ||||||||||| ||
Sbjct 669 AGCTAAAGGTCAAGCAAAAGCTAATGAGGTTGCTGTGGCTGAAGCAGAACCAAAGTTTAA 728
Query 989 CCCTTTCACCGGATCTGGAAGACGGTTAGATGGGA-GACCTCT-TGCCTATGA 1039
||||||||| || || |||||||| || ||||| | ||||| | | |||||||
Sbjct 729 CCCTTTCACGGGTTCGGGAAGACGTTTGGATGG-ACGACCTTTAT-CCTATGA 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57935262645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5