BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G21290.1

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480991 jgi|Araly1|480991|fgenesh2_kg.4__51__AT2G21290.1           459    1e-128


> Ahg480991 jgi|Araly1|480991|fgenesh2_kg.4__51__AT2G21290.1
Length=352

 Score =  459 bits (248),  Expect = 1e-128
 Identities = 307/333 (92%), Gaps = 14/333 (4%)
 Strand=Plus/Plus

Query  5    GAGGACGAGAGTGTGTGAGA-AAGAGGAGATGGCGGCGATGCAGTGGTGCGGCGCGATGA  63
            |||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct  1    GAGGACGAGAGTGTGTGAGAGAA-A-GAGATGGCGGCGATGCAGTGGTGCGGCGCGATGA  58

Query  64   CACGACGGATTATGATGACGCAGCGAACATCTGCAGCTCTGAATTGTTCGGCGAGGTATT  123
            ||||||||||| |||||||||||||   |   |||  | ||| || | ||||||||||||
Sbjct  59   CACGACGGATTCTGATGACGCAGCG---A---GCA--T-TGACTTCTCCGGCGAGGTATT  109

Query  124  CATCGTTATCTCCGGCGTG-TGCAGCTCCGGCGGTATCGGAAATGGATTTGTGTGGGAGA  182
            | ||||||||||||||| | |  |||||||| || |||||||||||||||||||||||||
Sbjct  110  CTTCGTTATCTCCGGCG-GCTTTAGCTCCGGTGGCATCGGAAATGGATTTGTGTGGGAGA  168

Query  183  GGAGATAAGAAGACGAAGAAAGGGAAAAGATTCAAAGGATCGTACGGGAATTCGAGAGGG  242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  169  GGAGATAAGAAGACGAAGAAAGGGAAAAGATTCAAAGGATCGTACGGGAATTCGAGAGGG  228

Query  243  AAGAAACAGAAGATGATTGAGAGAATCAAAGACAAGCTTGAGCTTCCCAGGTCTACTCCT  302
            ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  229  AAGAAGCAGAAGATGATTGAGAGAATCAAAGACAAGCTTGAGGTTCCCAGGTCTACTCCT  288

Query  303  TGGCCTCTTCCTTTCAAGCTCATCTGAATCTCT  335
            |||||||| ||||||||||||||||||||||||
Sbjct  289  TGGCCTCTCCCTTTCAAGCTCATCTGAATCTCT  321



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17208170639


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5