BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21300.1
Length=3009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480993 jgi|Araly1|480993|fgenesh2_kg.4__53__AT2G21300.1 4562 0.0
Ahg490663 jgi|Araly1|490663|fgenesh2_kg.7__96__AT4G38950.2 1849 0.0
> Ahg480993 jgi|Araly1|480993|fgenesh2_kg.4__53__AT2G21300.1
Length=2889
Score = 4562 bits (2470), Expect = 0.0
Identities = 2759/2899 (95%), Gaps = 17/2899 (1%)
Strand=Plus/Plus
Query 1 CAAATACAAAGgagagagagagagaagagGCGCTTCGCTACGAGATTTGCGGGACCAAAT 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAAATAGAAAGGAGAGAGAGAGAGAAGAGGCGCTTCGCTACGAGATTTGCGGGACCAAAT 60
Query 61 CAATGCCCATTGGTCCCTCCTCCTTCACACTGAGAGAGCCATTGGCCAATTTCCAGATAT 120
||||||||||||||||||| |||||||||||| |||||||| ||||||||||| | | ||
Sbjct 61 CAATGCCCATTGGTCCCTCTTCCTTCACACTGTGAGAGCCAATGGCCAATTTCTACAGAT 120
Query 121 AgacgacgacgacgacgaAGCAGCAGCATGATGATGGAGTAACTAGACGAAGACGAAGAA 180
| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 121 --A-GACGACGACGACGAAGCAGCAGCATGATGATGGAGTAACCAGACGAAGAAGAAGAA 177
Query 181 GATTAGAGGAGCTTCTGAAGAATCACTTTGAGGAAGAAGACA-ACATATCTCACAAGTGA 239
||||| | ||||||||||||||||||||||| |||||||| | ||| | |||||||||||
Sbjct 178 GATTACAAGAGCTTCTGAAGAATCACTTTGAAGAAGAAGA-AGACAAAACTCACAAGTGA 236
Query 240 GCAATGGGAGCGATTGCTGGAGAAGAGCTGAAGAAAATGGAGAAGACACAGGTGCATGTT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GCAATGGGAGCGATTGCTGGAGAAGAGCTGAAGAAAATGGAGAAGACACAGGTGCATGTT 296
Query 300 GCCCGGGAAGAGAAGATATTGGTTCTGGTGAGACTGAGACCTCTGAACGAGAAAGAGATC 359
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 297 GCCCGGGAAGAGAAGATATTGGTTCTGGTGAGACTGAGACCTCTGAATGACAAAGAGATC 356
Query 360 TTGGCTAATGAAGCTGCGGACTGGGAATGCATCAACGACACCACCGTATTGTACAGAAAC 419
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 357 TTGGCTAATGAAGCTGCGGATTGGGAATGCATCAACGACACCACCGTATTGTACAGAAAC 416
Query 420 ACGTTGCGTGAGGGCTCAACTTTTCCTTCTGCATACTCATTTGATAGAGTGTACCGAGGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ACGTTGCGTGAGGGCTCAACTTTTCCTTCTGCATACTCATTTGATAGAGTGTACCGAGGT 476
Query 480 GAATGCCCAACCAGACAAGTTTACGAAGATGGCCCCAAGGAAGTTGCTCTCTCGGTGGTC 539
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 477 GAATGCCCAACCAGACAAGTTTACGAAGATGGCCCTAAGGAAGTTGCTCTCTCTGTTGTC 536
Query 540 AAAGGAATTAACTCTAGTATTTTCGCGTATGGTCAGACGAGCAGTGGAAAGACATACACC 599
||||||||||| |||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 537 AAAGGAATTAATTCTAGTATTTTCGCATATGGTCAGACGAGCAGTGGAAAGACGTATACC 596
Query 600 ATGTCTGGTATAACTGAGTTTGCTGTGGCTGACATATTTGATTATATATTTAAGCATGAA 659
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 597 ATGTCTGGTATAACTGAGTTTGCTGTGGCTGACATATTTGATTATATTTTTAAGCATGAA 656
Query 660 GATAGGGCATTTGTTGTGAAATTTTCGGCTATAGAGATCTACAATGAGGCCATCCGCGAT 719
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 657 GATAGGGCATTTGTTGTGAAGTTTTCAGCTATAGAGATCTACAATGAGGCCATCCGAGAT 716
Query 720 CTTCTCAGCCCAGATAGTACACCACTGAGGCTACGAGATGACCCTGAGAAAGGGGCCGCC 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 717 CTTCTCAGCCCAGATAGTACACCACTGAGGCTACGAGATGACCCTGAGAAAGGGGCCGTC 776
Query 780 GTTGAAAAAGCCACAGAGGAAACGCTGAGAGATTGGAACCATTTGAAGGAACTTATCTCA 839
|||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||||
Sbjct 777 GTTGAAAAAGCCACAGAGAAAACCCTGAGAGACTGGAACCATTTGAAGGATCTTATCTCA 836
Query 840 GTTTGTGAAGCACAGCGGAAGATTGGTGAAACTTCACTAAATGAGAGAAGTTCAAGATCT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GTTTGTGAAGCACAGCGGAAGATTGGTGAAACTTCACTAAATGAGAGAAGTTCAAGATCT 896
Query 900 CATCAAATTATCAAACTAACAGTTGAAAGCTCTGCTCGTGAGTTCTTAGGCAAGGAAAAC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 897 CATCAAATTATCAAACTAACAGTTGAAAGCTCTGCTCGTGAGTTCTTAGGCAAAGAAAAC 956
Query 960 TCAACCACTCTCATGGCGAGTGTGAATTTTATTGATTTGGCGGGGAGCGAGCGTGCATCG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TCAACCACTCTCATGGCGAGTGTGAATTTTATTGATTTGGCGGGGAGCGAGCGTGCATCG 1016
Query 1020 CAGGCCTTATCAGCTGGTGCAAGACTTAAGGAGGGTTGTCATATCAATCGAAGCTTGCTG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1017 CAGGCCTTATCAGCTGGTGCAAGACTTAAGGAGGGTTGTCATATCAATCGAAGCTTGTTG 1076
Query 1080 ACTCTAGGAACAGTGATACGCAAACTCAGCAACGGAAGACAAGGACACATCAACTATAGA 1139
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1077 ACTCTAGGAACCGTGATACGCAAACTCAGCAACGGAAGACAGGGACACATCAACTATAGA 1136
Query 1140 GACTCCAAACTCACACGCATTCTTCAGCCGTGCTTGGGGGGCAATGCCAGAACCGCCATA 1199
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1137 GACTCCAAGCTCACACGCATTCTTCAGCCGTGCTTGGGAGGCAATGCTAGAACCGCCATA 1196
Query 1200 GTCTGCACGCTGAGTCCAGCGAGGAGTCATGTGGAGCAGACTAGAAACACTCTCTTGTTT 1259
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GTTTGCACGCTGAGTCCAGCGAGGAGTCATGTGGAGCAGACTAGAAACACTCTCTTGTTT 1256
Query 1260 GCTTGCTGTGCCAAGGAAGTCACCACGAAAGCACAGATCAATGTTGTTATGTCAGACAAG 1319
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1257 GCTTGCTGTGCCAAGGAAGTCACAACGAAAGCACAGATCAATGTTGTTATGTCAGACAAG 1316
Query 1320 GCTTTGGTGAAGCAACTACAGCGTGAGCTAGCCAGGCTCGAGAGCGAGCTGAGAAACCCA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GCTTTGGTGAAGCAACTACAGCGTGAGCTAGCCAGGCTCGAGAGCGAGCTGAGAAACCCA 1376
Query 1380 GCACCTGCAACCTCAAGCTGCGATTGTGGGGTGACACTGAGAAAGAAAGATCTTCAGATA 1439
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1377 GCCCCTGCAACCTCAAGCTGCGATTGTGGGGTTACGCTGAGAAAGAAAGATCTTCAGATA 1436
Query 1440 CAAAAGATGGAGAAGCAGCTTGCAGAAATGACAAAACAGCGGGATATTGCTCAATCTCGG 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CAAAAGATGGAGAAGCAGCTTGCAGAAATGACAAAACAGCGGGATATTGCTCAATCTCGG 1496
Query 1500 CTTGAAGATTTTATGAAGATGGTGGAACACGATGCGTCTTCGAAGGCTGGAACTCCGCAT 1559
||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||
Sbjct 1497 CTTGAAGATTTTATGAAGATGGTTGAACACGATGAGTCTTCGAAGGTTGGAACTCCGCAT 1556
Query 1560 TTCCGTAACCGTACCAACAAGTGGGAGGATGGTTCAGTGTCAGAGATATCAGGCGTGGTT 1619
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1557 TTCCGTAACCGTACCACCAAGTGGGAGGATGGTTCACTGTCAGAGATATCAGGCGTGGTT 1616
Query 1620 GATCCAGACAGGACCAGTTTCATATCAGATGGGACGTCAACGCCTCTGTCGACTGCAAGA 1679
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1617 GATCCAGACAGGACCAGTTTCATATCAGATGGGACCTCAACGCCTCTGTCGACTGCAAGA 1676
Query 1680 GCTCATGTTAGGTCTCACTCTGATGATGATCTGGAGGAGGAAATGTCGCCCAGGCATTCA 1739
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1677 GCTCATGTTAGGTCTCACTCTGATGATGATCTGGAGGAGGAAATGTCGCCTAGGCATTCA 1736
Query 1740 GGAGATCAATCAGAAGAATACTGCAAAGAGGTACAATGCATTGAGATGGAAGAATCGACC 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 GGAGATCAATCAGAAGAATACTGCAAAGAGGTACAATGCATTGAGATGGAAGAATCGACC 1796
Query 1800 AGAGACATTAATAAC-GACAGTGAAGAAAGGACAGACGCAGAAACACTTTTGGGACACAA 1858
||||||||||||||| | ||||||||||||||||||||| ||||||||| ||| |||||
Sbjct 1797 AGAGACATTAATAACAG-CAGTGAAGAAAGGACAGACGCCGAAACACTTCAGGGCCACAA 1855
Query 1859 TGCAGAGGCAAACGGTGAAACAGGTAGTGCTCAACACAGGATCCCGTCAAGTGTTAGAAG 1918
||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1856 CGCAGAGGCAAATGGTGGAACAGGTATTGCTCAACACAGGATCCCGTCAAGTGTTAGAAG 1915
Query 1919 TGTCAGGAGGAGGAAGAGTTGGAGCCGTGGAGATACCATGACAGGCACAAGCACTCCTCC 1978
||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct 1916 CGTCAGGAGGAGGAAGAGTTGGAGCCGTGGAGATACCATGCCGGGAACAAGCACTCCTCC 1975
Query 1979 TGATGCCCTGGAGACAGACTACCGTGGAAGACCGGAGGGTCATGGAT-TTGCGTTTCCTG 2037
||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1976 TGATGCCCTGGAGGCAGACTACCGTGGAAGACCGGAGGGTCATGG-TGTTGCGTTTCCTG 2034
Query 2038 ATTTGGAGTTTGGTTCTGGTGGGAAATTGTTGAGGAACGATTCAATGACTTCTCGTGGAA 2097
|||| ||||| |||||||||||||||| |||||||||||||||||| ||||||| ||||
Sbjct 2035 ATTTAGAGTTCAGTTCTGGTGGGAAATTATTGAGGAACGATTCAATGTCTTCTCGCGGAA 2094
Query 2098 GTGATTCAACTGAGGCTCACAGCATTGGAACACCGTTGGTGGGAGAAGAGGGAGGTATCA 2157
||||||| ||||||||||||||| |||||||||| |||||||||||||| ||||||||||
Sbjct 2095 GTGATTCCACTGAGGCTCACAGCGTTGGAACACCATTGGTGGGAGAAGATGGAGGTATCA 2154
Query 2158 CCAGCATACGGTCATTTGTTGAAGGGCTGAAGGAGATGGTTTCGGATCCGGAGAATTCAG 2217
||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2155 CCAGCATCCGATCATTTGTTGAAGGGCTGAAGGAGATGGTTTCGGATCCTGAGAATTCAA 2214
Query 2218 GGAAAATGAGGAA-GGACATTGGTGTGGATGCTATGGAGGAAGAGGTGTCTGGGACAATG 2276
|||||||| |||| ||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 2215 GGAAAATG-GGAAAGGACATTGGTGTGGACGCTATGGAAGAAGAGGTATCTGGGACAATG 2273
Query 2277 ACAAACTGGTCGGAGGAATTCGAGAGACAGAGAGAACAAATTCTGGGGCTGTGGCAGACA 2336
||||||||| ||||||| |||||||| ||||||||||||||| |||||||||||||||||
Sbjct 2274 ACAAACTGGCCGGAGGAGTTCGAGAGGCAGAGAGAACAAATTTTGGGGCTGTGGCAGACA 2333
Query 2337 TGTCATGTCTCGTTGGTGCATAGAACGTACTTCTTCTTGCTCTTCACGGGAGATCAAGCG 2396
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2334 TGTCATGTCTCATTGGTGCATAGAACATACTTCTTCTTGCTCTTCACGGGAGATCAAGCA 2393
Query 2397 GATTCGATATACATCGGAGTAGAGCTAAGAAGACTCTCCTTTATGAAAGAAAGTTTCTCT 2456
||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||
Sbjct 2394 GATTCGATATACATCGGAGTAGAGCTAAGAAAACTCTCCTTTATGAAAGAGAGCTTCTCT 2453
Query 2457 CAAGGAAACCATGCCTTTGAAAGAGGACAGACACTCACAATAGCTTCAAGCCTGAAGGCG 2516
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2454 CAGGGAAACCATGCCTTTGAAAGAGGACAAACACTCACAATAGCTTCAAGCCTGAAGGCG 2513
Query 2517 CTTCATAGGGAGAGACGGATGCTAAGCAAGCTTGTCGGGAAGAGGTTTACTGGAGAGGAA 2576
||||| ||||||||||| ||||||||||||||||| || |||||||| ||||||||||||
Sbjct 2514 CTTCACAGGGAGAGACGAATGCTAAGCAAGCTTGTAGGAAAGAGGTTCACTGGAGAGGAA 2573
Query 2577 AGGAAGAGACTTTACCAGAAGTTTGGGATTGCTGTGAACTCGAAACGTCGGCGGTTGCAG 2636
||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||
Sbjct 2574 AGGAAGAGACTTTACCAGAAGTTTGGGATCGCTGTAAACTCGAAACGCCGGCGGTTACAG 2633
Query 2637 CTAGCGAACCAGCTCTGGAGTAAACCCAATGACATAACTCATGCGGTTGAAAGCGCAGCC 2696
|||||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||
Sbjct 2634 CTAGCGAACCAGCTCTGGAGTAAACCCAATGACATAACCCATGTGGTCGAAAGTGCAGCC 2693
Query 2697 GTTGTAGCGAAA-CTGGTTAGGTTTGTGGAGCAAGGTAGAGCTATGAAGGAGATGTTTGG 2755
|| ||||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 2694 GTCGTAGC-AAAGCTGGTTAGGTTCGTGGAGCAAGGAAGAGCTATGAAGGAGATGTTTGG 2752
Query 2756 TCTGAGCTTCACGCCTCCGCTACCGACAACGCGGAGATCACTAAACTGGAGGAAAAGCAT 2815
||||||||||||||||| ||| |||||||| |||||||| || |||||||| ||||||||
Sbjct 2753 TCTGAGCTTCACGCCTCTGCTCCCGACAACTCGGAGATCTCTTAACTGGAGAAAAAGCAT 2812
Query 2816 GGCCACACTGTTCTAATTTTAATAGTCAACCACGTTCATATAATG-GT-TTCAAGGTTTG 2873
|||||| || ||||||||||| ||| ||| ||||||||| ||||| || || |||||| |
Sbjct 2813 GGCCACGCTTTTCTAATTTTATTAGGCAAACACGTTCATTTAATGAGTGTT-AAGGTT-G 2870
Query 2874 TACGTGTAAATCTTCTAGG 2892
|| ||||||||||||||||
Sbjct 2871 TATGTGTAAATCTTCTAGG 2889
> Ahg490663 jgi|Araly1|490663|fgenesh2_kg.7__96__AT4G38950.2
Length=2907
Score = 1849 bits (1001), Expect = 0.0
Identities = 2102/2616 (80%), Gaps = 145/2616 (6%)
Strand=Plus/Plus
Query 266 GCTGAAGAAAATGGAGAAGACACAGGTGCATGTTGCCCGGGAAGAGAAGATATTGGTTCT 325
||| ||||| |||||||||||||| ||| ||| ||||| ||||||||||| |||||||
Sbjct 210 GCTAAAGAAGATGGAGAAGACACATTTGCCTGTAGCCCGACAAGAGAAGATACTGGTTCT 269
Query 326 GGTGAGACTGAGACCTCTGAACGAGAAAGAGATCT-TGGCTAATGAAGCTGCGGACTGGG 384
||||||| |||||||||| || ||||||||||| | |||||| ||||||||||| ||||
Sbjct 270 GGTGAGATTGAGACCTCTAAATGAGAAAGAGAT-TGCGGCTAACGAAGCTGCGGATTGGG 328
Query 385 AATGCATCAACGACACCACCGTATTGTACAGAAACACGTTGCGTGAGGGCTC-AACTTTT 443
|||| ||||| || |||||| |||||||||||||||| ||||| || ||||| ||| |||
Sbjct 329 AATGTATCAATGATACCACCATATTGTACAGAAACACATTGCGCGAAGGCTCAAAC-TTT 387
Query 444 CCTTCTGCATACTCATTTGATAGAGTGTACCGAGGTGAATG-CCCAACCAGACAAGTTTA 502
||||||||||| |||||||||| ||| |||||||||||||| ||| ||||||||||||||
Sbjct 388 CCTTCTGCATATTCATTTGATAAAGTCTACCGAGGTGAATGTCCC-ACCAGACAAGTTTA 446
Query 503 CGAAGATGGCCCCAAGGAAGTTGCTCTCTCGGTGGTCAAAGGAATTAACTCTAGTATTTT 562
||| ||||| |||||||| | ||||| ||||| ||||||||||| || | |||||||||
Sbjct 447 CGAGGATGGAACCAAGGAAATCGCTCTGTCGGTTGTCAAAGGAATCAATTGTAGTATTTT 506
Query 563 CGCGTATGGTCAGACGAGCAGTGGAAAGACATACACCATGTCTGGTATAACTGAGTTTGC 622
||| ||||| |||||||| || |||||||||||||||||| ||||||| |||||||||||
Sbjct 507 CGCATATGGCCAGACGAGTAGCGGAAAGACATACACCATGACTGGTATTACTGAGTTTGC 566
Query 623 TGTGGCTGACATATTTGATTATATATTTAAGCATGAAGATAGGGCATTTGTT-GTGAAAT 681
|||||||||||||||||| ||||||||| |||||||||| ||||||||| | ||||| |
Sbjct 567 TGTGGCTGACATATTTGACTATATATTTCAGCATGAAGAAAGGGCATTT-TCAGTGAAGT 625
Query 682 TTTCGGCTATAGAGATCTACAATGAGGCCATCCGCGATCTTCTCAGCCCAGATAGTACAC 741
|||| |||||||||||||||||||||||||| || ||||| || ||| | ||| |||||
Sbjct 626 TTTCAGCTATAGAGATCTACAATGAGGCCATACGAGATCTGCTTAGCTCGGATGGTACAT 685
Query 742 CACTGAGGCTACGAGATGACCCTGAGAAAGGGGCCGCCGTTGAAAAAGCCACAGAGGAAA 801
| ||||||||||||||||| |||||||||||| | | ||||||||||||||||||||||
Sbjct 686 CGCTGAGGCTACGAGATGATCCTGAGAAAGGGACAGTTGTTGAAAAAGCCACAGAGGAAA 745
Query 802 CGCTGAGAGATTGGAACCATTTGAAGGAACTT--ATCTCAGTTTGTGAAGCACAGCGGAA 859
| || |||| |||||||| ||||||| ||| |||| | |||||||||||||||| ||
Sbjct 746 CTTTGCGAGACTGGAACCACCTGAAGGAGCTTCTATCT-A-TTTGTGAAGCACAGCGTAA 803
Query 860 GATTGGTGAAACTTCACTAAATGAGAGAAGTTCAAGATCTCATCAAATTATCAAACTAAC 919
|||||||||||| ||| | |||||||||||||| |||||||||||||| |||| ||| ||
Sbjct 804 GATTGGTGAAACCTCATTGAATGAGAGAAGTTCCAGATCTCATCAAATGATCAGACTGAC 863
Query 920 AGTTGAAAGCTCTGCTCGTGAGTTCTTAGGCAAGGAAAACTCAACCACTCTCATGGCGAG 979
||||||||||||||||||||||||| ||||||| |||||||| ||||| |||||||||||
Sbjct 864 AGTTGAAAGCTCTGCTCGTGAGTTCCTAGGCAAAGAAAACTCCACCACCCTCATGGCGAG 923
Query 980 TGTGAATTTTATTGATTTGGCGGGGAGCGAGCGTGCATCGCAGGCCTTATCAGCTGGTGC 1039
||||||||| || ||| | ||||| |||||||||||||| ||||| | ||||||||| |
Sbjct 924 TGTGAATTTCATCGATCTAGCGGGAAGCGAGCGTGCATCACAGGCGATGTCAGCTGGTAC 983
Query 1040 AAGACTTAAGGAGGGTTGTCATATCAATCGAAGCTTGCTGACTCTAGGAACAGTGATACG 1099
|||||| ||||| || || ||||||||| |||| ||||||||||| ||||||||||| ||
Sbjct 984 AAGACTCAAGGAAGGCTGCCATATCAATAGAAGTTTGCTGACTCTTGGAACAGTGATCCG 1043
Query 1100 CAAACTCAGCAACGGAAGACAAGGACACATCAACTATAGAGACTCCAAACTCACACGCAT 1159
||||| || || ||||||||||| |||||||||| |||||||||||| ||||| || ||
Sbjct 1044 TAAACTTAGTAAGGGAAGACAAGGGCACATCAACTTTAGAGACTCCAAGCTCACCCGAAT 1103
Query 1160 TCTTCAGCCGTGCTTGGGGGGCAATGCCAGAACCGCCAT-AGTCTGCACGCTGAGTCCAG 1218
||| ||||| ||||||||||| ||||| ||||| || || | ||||||| ||||| ||||
Sbjct 1104 TCTACAGCCATGCTTGGGGGGTAATGCAAGAACAGCTATCA-TCTGCACTCTGAGCCCAG 1162
Query 1219 CGAGGAGTCATGTGGAGC-AGACTA-GAAACACTCTCTTGTTTGCTTGCTGTGCCAAGGA 1276
| ||||||||||| |||| | || | ||| ||||||||||||||| |||||||| |||||
Sbjct 1163 CAAGGAGTCATGTAGAGCTA-ACGAAGAA-CACTCTCTTGTTTGCGTGCTGTGCAAAGGA 1220
Query 1277 AGTCACCACGAAAG-CACAGATCAATGTTGTTATGTCAGACAAGGCTTTGGTGAAGCAAC 1335
||| ||||| |||| | | |||||||||||||||||||||||||||| || |||||||||
Sbjct 1221 AGTTACCAC-AAAGGCGCGGATCAATGTTGTTATGTCAGACAAGGCTCTGCTGAAGCAAC 1279
Query 1336 TACAGCGTGAGCTAGCCAGGCTCGAGAGCGAGCTGAGAAACCCAGCA-CCTGCAAC--C- 1391
||||||||||||| || ||||| |||| ||||||||||||||| || ||| || | |
Sbjct 1280 TACAGCGTGAGCTTGCGAGGCTTGAGACCGAGCTGAGAAACCCTGCCTCCT-CACCTGCC 1338
Query 1392 TCAAGCTGCGATTGTGGGGTGACACTGAGAAAGAAAGATCTTCAGATACAAAAGATGGAG 1451
|||| ||| ||||||| |||| |||| |||||||||||||| ||||||||||||||
Sbjct 1339 TCAAACTGTGATTGTGCAATGACGGTGAGGAAGAAAGATCTTCAAATACAAAAGATGGAA 1398
Query 1452 AAGCAGCTTGCAGAAATGACAAAACAGCGGGATATTGCTCAATCTCGGCTTGAAGATTTT 1511
||| || | || || ||| ||||||| ||||| |||||||||| ||||||||||||||
Sbjct 1399 AAGGAGATCGCTGAGTTGAGAAAACAGAGGGATCTTGCTCAATCCCGGCTTGAAGATTTC 1458
Query 1512 ATGAAGA-TGGTGGAACACGATGCGTCTTCGAAGGCTGGAACTCCGCATTTCCGTAACCG 1570
|||| || || | |||||| ||| | | || ||| ||||||||||||||||| | ||||
Sbjct 1459 ATGA-GAATGATTGAACACAATGTGGCGTCAAAGCCTGGAACTCCGCATTTCGGCAACCA 1517
Query 1571 TACCA-ACAAGTGGGAGGATGGTTCAGTGTCAGAGATATCAGGCGTGGTTGATCCAGACA 1629
|| | |||||||||| ||||||||||| || |||| ||| |||||||| ||| ||||||
Sbjct 1518 CAC-AGACAAGTGGGATGATGGTTCAGTATCGGAGACATCTGGCGTGGTCGATTCAGACA 1576
Query 1630 GGACCAGTTTCATATCAGATGGGACGTCAACGCCTCTGTCGAC-TGCAAGAGCTCATGTT 1688
| | |||| |||||||||||| | | | || || ||||| | | |||||||| |||||
Sbjct 1577 GAAGGAGTTACATATCAGATGGAATGCCTACACCGCTGTCAATAT-CAAGAGCTTATGTT 1635
Query 1689 -AGGTCTCACTCTGA---TGATGATCTGGAGGAGGAAATGTCGCCCAGGCATTCAGGA-G 1743
| ||||||||||| |||||||||||| || || | | ||| |||| ||| ||| |
Sbjct 1636 CAT-TCTCACTCTGACGATGATGATCTGGATGAAGAC-T-T-GCCTAGGCGTTC-GGAAG 1690
Query 1744 ATCAATCAGAAGAATACTGCAAAGAGGTACAATGCATTGAGA-TGGAAGAATC-GACCAG 1801
||| | |||||||||| |||| ||| || ||||||||||||| || | ||||| | | |
Sbjct 1691 ATCTACCAGAAGAATATTGCAGAGAAGTTCAATGCATTGAGACTG-AGGAATCAGTC-AC 1748
Query 1802 AGAC-ATTAATAACGACAGTGAAGA-AAG-GA-CAGA-CGCAGAAACAC-TTTTGGGACA 1855
|| | || |||||| | || |||| ||| || |||| | | |||| || |||| || |
Sbjct 1749 AGTCTAT-AATAAC-A-AGA-AAGACAAGAGAGCAGAAC-CTGAAA-ACGTTTTAGG-C- 1800
Query 1856 CAATGCAGAGGCAAACGGTGAAACAGGTAGTGCTCAACAC-AGGATCCCGTCAAGTGTTA 1914
| || |||| | | | || ||| | ||| | || | || | | | |
Sbjct 1801 CG-TGGTGAGG-ATGC--T-AAT--GGT-G-----AAC-CGAG--T---GT-A-G-GCCA 1838
Query 1915 GAAGTGTCAGGAG-GAGGAAGAGTTGGAGCCGTGGAGATACCATGACAGGCACAAGCACT 1973
||| |||||| | ||| ||| | ||| ||| |||| || || ||||||| ||||||
Sbjct 1839 GAAC-GTCAGG-GTGAG-AAGC-T-GGAACCGCAGAGAGACTGTGTCAGGCACGAGCACT 1893
Query 1974 CCTCCTGATGCCCT-GGAGACAGACTACCGT-GGAAGACCGGAGGGTCATG-GATTTGCG 2030
|| ||||| ||| || ||||| || || | |||||||| ||| ||||| |||| |||
Sbjct 1894 CCGCCTGAAAACCTAGG-GACAGGCTTCC-TCGGAAGACCAGAGAGTCATAAGATT-GCG 1950
Query 2031 TTTCCTGATTTGGAGTTTGGTTCTGGTGGGAAATTGTTGAGGAACGATTCAATGACTTCT 2090
||||||||||| ||||| |||||| | | || | ||||| ||||| ||| |||||
Sbjct 1951 TTTCCTGATTTAGAGTTCGGTTCTACT---ATATCG---AGGAATGATTCTATGTCTTCT 2004
Query 2091 CGTGGAAGTGATTCAACTGAGGCTCACAGCATTGGAACACCGTTGGTGGGAGAAGAGGGA 2150
| || |||||||| || | |||||| ||||| |||| ||||| | | ||||||||||
Sbjct 2005 TGCGGGAGTGATTCTACAGGGGCTCAGAGCATCAGAACGCCGTTAG-G--AGAAGAGGGA 2061
Query 2151 GGTATCACCAGCATACGGTCATTT-GTTGAAGGGCTGAAGGAGATGGTTTCG-GATCC-G 2207
||||| || || || ||| | ||| ||||||||||| || ||||||| | | || |
Sbjct 2062 GGTATTACTAGTATCCGGAC-TTTCGTTGAAGGGCTTAAAGAGATGGCCAAGCG-TCAAG 2119
Query 2208 GAGAATTCAGGGAAAATGAGGAAGGACATTGGTGTGGATGCTATGGAGGAAGAGGTG-TC 2266
| || || | || || || ||| || || | | |||| ||| | || |
Sbjct 2120 GCGAGGTCTCG-AA--TGCCGA-GGA--TTC-TG-GTAAA--ATGG-GGA-G-GGACAT- 2165
Query 2267 TGGGAC-AATGA-CAAACTGGTCGGAGGAATTCGAGAGACAGAGAG-AACAAATTCTGGG 2323
||| | ||| | | | ||| ||||| |||| ||||||||| | | || | |||||||
Sbjct 2166 TGGT-CTAAT-ATCCA--TGGACGGAG-AATTTGAGAGACAGCG-GCAAGAGATTCTGGA 2219
Query 2324 GCTGTGGCAGACATGTCATGTCTCGTTGGTGCATAGAACGTACTTCTTCTTGCTCTTCAC 2383
| | ||||| || ||| | |||| |||||||||||||| |||||||||||||||||||
Sbjct 2220 GTTATGGCAAACTTGTAACATCTCTTTGGTGCATAGAACATACTTCTTCTTGCTCTTCAA 2279
Query 2384 GGGAGATCAAGCGGATTCGATATACATCGGAGTAGAGCTAAGAAGACTCTCCTTTATGAA 2443
|||||| |||||||||| || |||||||||||||||||||||||||| | ||||||||
Sbjct 2280 AGGAGATGAAGCGGATTCAATCTACATCGGAGTAGAGCTAAGAAGACTTTTGTTTATGAA 2339
Query 2444 AGAAAGTTTCTCTCAAGGAAACCATGCCTTTGAAAGAGGACAGACACTCA-CAATAGCTT 2502
||| || |||||||| |||||||| || || ||| ||||| | || || | || | || |
Sbjct 2340 AGATAGCTTCTCTCAGGGAAACCAAGCATTGGAAGGAGGAGAAAC-CTTAACATTGGCCT 2398
Query 2503 CAAGCCTGAAGGCGCTTCATAGGGAGAGACGGATGCTAAGCAAGCTTGTCGGGAAGAGGT 2562
|||||| ||| |||||||||||||||||| |||||| ||||||||||| ||||| ||||
Sbjct 2399 CAAGCCGGAAAGCGCTTCATAGGGAGAGAAAGATGCTGAGCAAGCTTGTGGGGAAAAGGT 2458
Query 2563 TTACTGGAGAGGAAAGGAAGAGACTTTACCAGAAGTTTGGGATTGCTGTGAACTCGAAAC 2622
|| | | ||| || ||||| ||| | || || |||||||||||||| || ||||| ||||
Sbjct 2459 TTTCAGAAGAAGAGAGGAAAAGAATCTATCACAAGTTTGGGATTGCGGTTAACTCCAAAC 2518
Query 2623 GTC-GGCGGTTGCAGCTAGCGAACCAGCTCTGGAGTAAACCCAATGACATAACTCATGCG 2681
| | |||| || || || | |||| |||||||||| || ||||| |||| ||||| |
Sbjct 2519 G-CAGGCGATTACAACTTGTGAACGAGCTCTGGAGCAATCCCAAGGACACGACTCAGGTT 2577
Query 2682 GTTGAAAGCGCAGCCGTTGTAGCGAAACTGGTTAGGTTTG-TGGAGCAAGGTAGAGCTAT 2740
|| |||||||||| ||||||||||| || || ||||| | || ||||||| ||||| ||
Sbjct 2578 GTGGAAAGCGCAGATGTTGTAGCGAAGCTCGTGAGGTTCGCTG-AGCAAGGCAGAGCCAT 2636
Query 2741 GAAGGAGATGTTTGGTCTGAGCTTCACGCCTCCG-C-TACC-GACAACGCGGAGATCACT 2797
|||||||||||||||||||| |||||| ||||| | | | ||| || |||||||| |
Sbjct 2637 GAAGGAGATGTTTGGTCTGACCTTCACACCTCCTTCATTCTTGACTACTCGGAGATCGC- 2695
Query 2798 AAACT-GGAGGAAAAGCATGGCC-ACACTGTTCTAA 2831
| | | |||| ||||||||| || ||||| ||||||
Sbjct 2696 ATAGTTGGAGAAAAAGCATG-CCTACACTTTTCTAA 2730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113623200835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5