BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21330.1
Length=1553
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932060 jgi|Araly1|932060|scaffold_400048.1 2152 0.0
Ahg490667 jgi|Araly1|490667|fgenesh2_kg.7__100__AT4G38970.1 1051 0.0
> Ahg932060 jgi|Araly1|932060|scaffold_400048.1
Length=1293
Score = 2152 bits (1165), Expect = 0.0
Identities = 1243/1281 (97%), Gaps = 3/1281 (0%)
Strand=Plus/Plus
Query 81 TAGCAACAATGGCGTCAAGCACTGCGACTATGCTCAAAGCCTCACCGGTGAAATCTGATT 140
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 13 TAGCAACAATGGCGTCAAGCACTGCCACTATGCTCAAAGCCTCACCGGTGAAATCTGATT 72
Query 141 GGGTTAAGGGACAGAGTCTTCTCCT-C--CGTCAACCTTCCTCTGTCTCAGCTATTCGCA 197
||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct 73 GGGTTAAGGGACAGAGTCTCCTCCTCCGTCGTCAACCTTCCTCTGTCTCAGCTATTCGCA 132
Query 198 GCCACGTGGCACCTTCCGCTCTCACCGTCCGAGCCGCTTCTGCTTACGCCGATGAGCTCG 257
||||||||||||||||| ||||||||||||| |||||||||||||||||||| || ||||
Sbjct 133 GCCACGTGGCACCTTCCTCTCTCACCGTCCGTGCCGCTTCTGCTTACGCCGACGAACTCG 192
Query 258 TCAAAACCGCTAAAACAATCGCGTCTCCGGGACACGGAATTATGGCGATGGATGAGTCCA 317
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 193 TCAAAACAGCTAAAAAAATCGCGTCTCCGGGACACGGAATTATGGCGATGGATGAGTCAA 252
Query 318 ACGCGACTTGTGGAAAGCGTTTGGCGTCAATTGGGCTAGAGAACACGGAGGCTAACCGTC 377
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 253 ACGCGACTTGTGGAAAGCGTTTGGCGTCCATTGGGCTAGAGAACACGGAGGCTAACCGTC 312
Query 378 AAGCTTACAGGACGTTGCTTGTGTCGGCTCCAGGACTTGGACAGTACATCTCCGGAGCTA 437
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 313 AAGCTTACCGGACGTTGCTTGTGTCGGCTCCAGGACTGGGACAGTACATCTCCGGAGCTA 372
Query 438 TCCTGTTCGAGGAGACTCTGTACCAATCCACCACTGATGGCAAGAAAATGGTTGATGTTC 497
||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||
Sbjct 373 TCCTGTTCGAGGAGACTTTGTACCAATCCACCACCGACGGCAAGAAAATGGTTGATGTTC 432
Query 498 TCGTCGAGCAGAACATCGTCCCTGGCATCAAAGTCGACAAGGGTTTGGTGCCACTTGTTG 557
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 TCGTTGAGCAGAACATCGTCCCTGGCATCAAAGTCGACAAGGGTTTGGTGCCACTTGTTG 492
Query 558 GGTCTTACGACGAGTCATGGTGCCAAGGACTTGACGGTTTAGCCTCTCGCACCGCTGCTT 617
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 493 GGTCTAACGACGAGTCATGGTGCCAAGGACTTGACGGTTTAGCCTCTCGTACCGCTGCTT 552
Query 618 ACTACCAACAAGGTGCTCGTTTCGCCAAATGGCGTACTGTTGTGAGCATTCCAAATGGAC 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 ACTACCAACAAGGTGCTCGTTTCGCCAAATGGCGTACTGTTGTGAGCATTCCAAATGGAC 612
Query 678 CCTCTGCTTTGGCTGTTAAAGAAGCAGCTTGGGGACTTGCTCGCTACGCAGCTATTTCTC 737
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 613 CCTCTGCTTTGGCTGTTAAAGAAGCAGCTTGGGGACTTGCTCGCTACGCTGCTATTTCTC 672
Query 738 AAGACAGCGGTCTGGTGCCGATTGTGGAGCCAGAGATTATGTTGGACGGAGAACACGGCA 797
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 673 AGGACAGCGGTCTGGTGCCGATTGTGGAGCCAGAGATTCTGTTGGACGGAGAACACGGCA 732
Query 798 TTGACAGGACATACGACGTTGCAGAGAAGGTTTGGGCTGAGGTCTTCTTCTACCTCGCTC 857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 TTGACAGGACATACGAGGTTGCAGAGAAGGTTTGGGCTGAGGTCTTCTTCTACCTCGCTC 792
Query 858 AGAACAACGTCATGTTCGAAGGTATTCTCCTGAAGCCAAGCATGGTTACTCCAGGAGCTG 917
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 793 AGAACAACGTCCTGTTCGAAGGTATTCTCCTGAAGCCGAGCATGGTTACTCCAGGAGCTG 852
Query 918 AGGCCACAGACAGAGCTACTCCTGAGCAGGTTGCTTCCTACACTCTCAAGCTCCTTCGCA 977
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 853 AGGCTACAGACAGAGCTACTCCCGAGCAGGTTGCTTCCTACACTCTCAAGCTCCTTCGCA 912
Query 978 ACAGAATCCCTCCTGCTGTCCCCGGAATCATGTTCTTGTCTGGTGGACAGTCCGAGTTGG 1037
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 913 ACAGAATCCCTCCCGCTGTCCCCGGAATCATGTTCTTGTCTGGTGGGCAGTCCGAGTTGG 972
Query 1038 AGGCGACCTTGAACTTGAACGCAATGAACCAGGCACCGAACCCATGGCACGTGTCCTTCT 1097
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 AGGCGACCTTGAACTTAAACGCAATGAACCAGGCACCGAACCCATGGCACGTGTCCTTCT 1032
Query 1098 CCTACGCACGTGCCTTGCAGAACACTTGCTTGAAGACATGGGGAGGCAAGGAAGAGAACG 1157
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1033 CCTATGCACGTGCCTTGCAGAACACTTGCTTGAAGACATGGGGAGGCAGGGAAGAGAACG 1092
Query 1158 TGAAGGCGGCTCAGGACATTCTCTTGGCCAGAGCCAAAGCCAATTCGCTGGCTCAGCTCG 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 TGAAGGCGGCTCAGGACATTCTCTTGGCCAGAGCCAAAGCCAATTCGCTGGCTCAGCTCG 1152
Query 1218 GGAAATACACTGGAGAAGGCGAGTCTGAGGAAGCCAAGGAGGGTATGTTTGTAAAAGGCT 1277
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1153 GGAAATACACAGGAGAAGGCGAGTCCGAGGAAGCCAAGGAGGGTATGTTTGTAAAAGGCT 1212
Query 1278 ACACCTACTAAGCTATTTGTAATAATGGTTCCATAGATCAAAACTCAAAAACTTGAGCTT 1337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 ACACCTACTAAGCTATTTGTAATAATGGTTCCATAGATCAAAACTCAAAAACTTGAGCTT 1272
Query 1338 GATTCTGGTCATTTGAGTTAT 1358
||||||||| ||||||||||
Sbjct 1273 GATTCTGGTGTTTTGAGTTAT 1293
> Ahg490667 jgi|Araly1|490667|fgenesh2_kg.7__100__AT4G38970.1
Length=1500
Score = 1051 bits (569), Expect = 0.0
Identities = 975/1167 (84%), Gaps = 44/1167 (4%)
Strand=Plus/Plus
Query 131 AAATCTGATTGGGTTAAGGGACAGAGTC-TTCTCCTCCGTCAACCTTCCTCTGTCTCAGC 189
||||| || ||||| |||||||| || | ||||| ||||||| ||||| || | ||| |
Sbjct 146 AAATCCGAATGGGTCAAGGGACAAAG-CGTTCTCTTCCGTCAGCCTTCTTCCGCCTCCG- 203
Query 190 T-ATTCGCAGCCA-CGTGGCACCTTCCGCTCTCACCGTCCGAGCCGCTT-CTGCTTACGC 246
| | | | || | |||| |||| | | | ||||||||||| ||||||| || | |||||
Sbjct 204 TCGTCCTCCGCAACCGTGCCACC-T-C-C-CTCACCGTCCGTGCCGCTTCCT-CCTACGC 258
Query 247 CGATGAGCTCGTCAAAACCGCTAAAACAATCGCGTCTCCGGGACACGGAAT-TATGGCGA 305
||||||||| || || || || ||||| || ||||||||||||| ||||| | ||||||
Sbjct 259 CGATGAGCTTGTTAAGACAGCGAAAACTATTGCGTCTCCGGGACGTGGAATCT-TGGCGA 317
Query 306 TGGATGAGTCCAACGCGACTTG-TGGAAAGCGTTTGGCGTCAATTGGGCTAGAGAACACG 364
|||| ||||| ||||||||||| ||||| ||||||| || || ||||||||||||||
Sbjct 318 TGGACGAGTCGAACGCGACTTGCGGGAAA-CGTTTGGATTCGATAGGGCTAGAGAACACT 376
Query 365 GAGGCTAACCGTCAAGCTTACAGGACGTTGCTT-GTGTCGGCTCCAGGACTTGGACAGTA 423
||||| ||||||||||||| | |||| ||| || || || || || ||||| || |||||
Sbjct 377 GAGGCAAACCGTCAAGCTTTCCGGACTTTG-TTGGTCTCTGCACCTGGACTGGGGCAGTA 435
Query 424 CATCTCCGGAGCTATCCTGTTCGAGGAGACTCTGTACCAATCCACCACTGATGGCAAGAA 483
||||||||| || ||||| || ||||||||| |||| || || ||||| || || |||||
Sbjct 436 CATCTCCGGCGCAATCCTATTTGAGGAGACTTTGTATCAGTCTACCACCGAAGGGAAGAA 495
Query 484 AATGGTTGATGTTCTCGTCGAGCAGAACATCGTCCCTGGCATCAAAGTCGACAAGGGTTT 543
|||||| || || ||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 496 AATGGTCGACGTCCTCGTCGAGCAGAACATTGTCCCTGGTATCAAAGTTGACAAGGGTTT 555
Query 544 GGTGCCACTTGTTGGGTCTTACGACGAGTCATGGTGCCAAGGACTTGACGGTTTAGCCTC 603
||||||||||||||| || || | ||||||||||||||||||||||||||| |||||||
Sbjct 556 GGTGCCACTTGTTGGATCCAACAATGAGTCATGGTGCCAAGGACTTGACGGTCTAGCCTC 615
Query 604 TCGCACCGCTGCTTACTACCAACAAGGTGCTCGTTTCGCCAAATGGCGTACTGTTGTGAG 663
| | || ||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct 616 TAGAACTGCTGCTTACTACCAACAGGGTGCGCGTTTTGCCAAATGGCGTACTGTCGTGAG 675
Query 664 CATTCCAAATGGACCCTCTGCTTTGGCTGTTAAAGAAGCAGCTTGGGGACTTGCTCGCTA 723
|||||| || || || |||||| | || || |||||||| |||||||| |||||||| ||
Sbjct 676 CATTCCTAACGGTCCTTCTGCTCTCGCCGTCAAAGAAGCTGCTTGGGGTCTTGCTCGATA 735
Query 724 CGCAGCTATTTCTCAAGACAGC-GGTCTGGTGCCGATTGTGGAGCCAGAGAT-TATGTTG 781
||| || ||||| || |||||| ||| |||| |||||||||||||||||||| | |||||
Sbjct 736 CGCTGCCATTTCACAGGACAGCGGGT-TGGTTCCGATTGTGGAGCCAGAGATCT-TGTTG 793
Query 782 GACGGAGAACACGGCATTGACAGGACATACGACGTTGCAGAGAAGGTTTGGGCTGAGGTC 841
|| |||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 794 GATGGAGAACACGACATTGACAGAACATACGACGTAGCAGAGAAGGTTTGGGCTGAGGTT 853
Query 842 TTCTTCTACCTCGCTCAGAACAACGTCATGTTCGAAGGTATTCTCCTGAAGCCAAGCATG 901
||||| ||||| ||||||||||| |||||||| |||||||||||||| || ||||| |||
Sbjct 854 TTCTTTTACCTTGCTCAGAACAATGTCATGTTTGAAGGTATTCTCCTAAAACCAAGTATG 913
Query 902 GTTACTCCAGGAGCTGAGGCCACAGACAGAGCTACTCCTGAGCAGGTTGCTTCCTACACT 961
|| ||||| ||||||||| | | |||||||| ||||||||| | ||||| |||||||
Sbjct 914 GTGACTCCCGGAGCTGAGTCTAAAGACAGAGTTACTCCTGAAAAAGTTGCCGCCTACACC 973
Query 962 CTCAAGCTCCTTCGCAACAGAATCCCTCCTGCTGTCCCCGGAATCATGTTCTTGTCTGGT 1021
||||||||||| |||||||| | ||| | | ||| | || |||||||| ||
Sbjct 974 CTCAAGCTCCTCCGCAACAG-A---GTCC--C--T-CCC-G---CA--TTCTTGTCCGGA 1018
Query 1022 GGACAGTCCGAGTTGGAGGCGAC-CTTGAACTTGAACGCAATGAACCAGGCACCGAACCC 1080
|||||||| ||| ||||||| || | | ||| |||||||||||||||||||||| |||||
Sbjct 1019 GGACAGTCAGAGGTGGAGGCAACAC-TCAACCTGAACGCAATGAACCAGGCACCAAACCC 1077
Query 1081 ATGGCACGTGTCCTTCTCCTACGCACGTGCCTTGCAGAACACTTG-CTTGAAGACATGGG 1139
|||||||||||||||||||||||||||||| |||||||||||||| || ||| |||||||
Sbjct 1078 ATGGCACGTGTCCTTCTCCTACGCACGTGCGTTGCAGAACACTTGTCT-GAAAACATGGG 1136
Query 1140 GAGGCA-AGGAAGAGAACGTGAAGGCGGCTCAGGAC-ATTCTCTTGGCCAGAGCCAAAGC 1197
| |||| | ||||||||||| || |||||| || | |||||||||| | ||||| ||
Sbjct 1137 GCGGCAGACCC-GAGAACGTGAACGCAGCTCAG-ACCACTCTCTTGGCCCGTGCCAAGGC 1194
Query 1198 CAATTCGCTGGCTCAGCTCGGGAAATACACTGGAGAAGGCGAGTCTGAGGAAGCCAAGGA 1257
||||||| ||||||||||||| |||||||||||||| || ||||| || || || |||||
Sbjct 1195 CAATTCGTTGGCTCAGCTCGGAAAATACACTGGAGAGGGTGAGTCCGAAGAGGCTAAGGA 1254
Query 1258 GGGTATGTTTGTAAAAGGCTACACCTA 1284
||| ||||| || ||||||||||||||
Sbjct 1255 GGGCATGTTCGTCAAAGGCTACACCTA 1281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58163804115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5