BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21350.1
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899400 jgi|Araly1|899400|Al_scaffold_0004_50 501 3e-141
Ahg490673 jgi|Araly1|490673|fgenesh2_kg.7__106__AT4G39040.1 263 1e-69
> Ahg899400 jgi|Araly1|899400|Al_scaffold_0004_50
Length=351
Score = 501 bits (271), Expect = 3e-141
Identities = 327/353 (93%), Gaps = 7/353 (2%)
Strand=Plus/Plus
Query 322 ATGAGAGAAAACCGAAGAAGCTCGGC--T-TTGGAGTTGTCTGCGAAAGAGAAGAGAAAG 378
|||| ||||| ||||||||||| | | |||||||||||||| || ||||||||||||
Sbjct 1 ATGACAGAAATTGGAAGAAGCTCGACTTTGTTGGAGTTGTCTGCCAAGGAGAAGAGAAAG 60
Query 379 CTTGCTTCTTACGCACATCA-TTTGGGTGACAAACTGAAATCTCAACTTGTAGGCAAGTC 437
|||||||||||||||||| | |||||||||||||||||||||||| || |||||||||||
Sbjct 61 CTTGCTTCTTACGCACAT-AGTTTGGGTGACAAACTGAAATCTCAGCTCGTAGGCAAGTC 119
Query 438 TGGCGTTACGGATTCAGTCGTCTTGTCCTTCGTAGAGACGCTGGAGAAGAACGAGCTCTT 497
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 TGGCGTTACGGATTCAGTAGTCTTGTCCTTCATAGAGACGCTGGAGAAGAACGAGCTCTT 179
Query 498 AAAGGTGAAAATACACAGAACATGCCCTGGAGAGCTAGAGGACATGATTCTACGTTTGGA 557
|||||||||||||||||| ||||||||||||||| |||||||||||||||| | ||||||
Sbjct 180 AAAGGTGAAAATACACAGGACATGCCCTGGAGAGTTAGAGGACATGATTCTGCATTTGGA 239
Query 558 GGAAGCCACTGGTTCAGTATCAGTCGGGCAAATTGCGCGGACCGTGATACTTTATCGTCC 617
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 240 GGAAGCCACTGGTTCAGTATCAGTCGGGCAAATTGCGCGGACTGTGATACTCTATCGTCC 299
Query 618 TAGTCCCACCAAATTGAAAGCCGACGAGGACAAAAAA-CGGAATGAAGAGTAG 669
|||||||||||||||||||||||||||| | |||||| || ||||||||||||
Sbjct 300 TAGTCCCACCAAATTGAAAGCCGACGAGAAGAAAAAAACG-AATGAAGAGTAG 351
> Ahg490673 jgi|Araly1|490673|fgenesh2_kg.7__106__AT4G39040.1
Length=963
Score = 263 bits (142), Expect = 1e-69
Identities = 255/307 (83%), Gaps = 18/307 (6%)
Strand=Plus/Plus
Query 341 GCTCGGCTTTGGAGTTGTCTGCGAAA-GAGAAG-AGAAAGCTT-GCTTCTTACGCACATC 397
|||| |||||| || |||| | ||| |||||| || || || |||||||||||||||
Sbjct 428 GCTCTGCTTTGAAGCTGTC-GATAAAGGAGAAGAAGGAA--TTGGCTTCTTACGCACAT- 483
Query 398 A-TTTGGGTGACAAACTGAAATCTCAACTTGTAGGCAAGTCTGGCGTTACGGATTCAGTC 456
| ||||||||| ||| |||||| |||||| || ||||| ||||||||||| |||||||||
Sbjct 484 AGTTTGGGTGATAAATTGAAATGTCAACTCGTCGGCAAATCTGGCGTTACTGATTCAGTC 543
Query 457 GTCTTGTCCTTCGTAGAGACGCTGGAGAAGAACGAGCTCTTAAAGGTGAAAATACACA-G 515
|| || |||||| | ||||| || ||||||||||||||||||||||||||||||| || |
Sbjct 544 GTTTTCTCCTTCCTCGAGACCCTCGAGAAGAACGAGCTCTTAAAGGTGAAAATACGCAAG 603
Query 516 AACAT-GCCCTGGA-GAGCTAGAGGACATGATTCTA-CGTTTGGAGGAAGCCACTGGTTC 572
| ||| |||| | | ||||||||||| | ||| | | |||||||||||| ||||||||
Sbjct 604 A-CATCGCCC-G-ATGAGCTAGAGGATGCGGTTC-AGCATTTGGAGGAAGCGACTGGTTC 659
Query 573 AGTATCAGTCGGGCAAATTGCGCGGACCGTGATACTT-TATCGTCCTAGTCCCACCAAAT 631
||| |||| |||||||| | |||||| |||||| || ||||| |||||||||||||||
Sbjct 660 GGTAGCAGTAGGGCAAATCGGGCGGACTGTGATA-TTGTATCGGCCTAGTCCCACCAAAA 718
Query 632 TGAAAGC 638
|||||||
Sbjct 719 TGAAAGC 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24551158548
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5