BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21370.1
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899401 jgi|Araly1|899401|Al_scaffold_0004_51 2078 0.0
> Ahg899401 jgi|Araly1|899401|Al_scaffold_0004_51
Length=1464
Score = 2078 bits (1125), Expect = 0.0
Identities = 1333/1432 (93%), Gaps = 20/1432 (1%)
Strand=Plus/Plus
Query 16 ATGCTGATTCTTCGTCAATTTCAGATATCTTCATTTGAGCTCTTCCAATCTCCAAAACAA 75
|||||||||||||| ||||||||||| ||||| ||||| ||||| |||||||||||||||
Sbjct 1 ATGCTGATTCTTCGACAATTTCAGATCTCTTCGTTTGAACTCTTTCAATCTCCAAAACAA 60
Query 76 ACAGGGTTTTACTCTAGTTCAAGG---AGTGTTC--CTCTAC-CCAGAACTA-GATTTTA 128
| ||| | | |||||||||||| || || | ||| | | | ||| || |
Sbjct 61 TCTGGG-TGT--TCTAGTTCAAGGACCAGAACTCGGTTTTACTCTA-ATCTAGGA-AGGA 115
Query 129 -CTCCGATTTCAGAGTTATGAGTGGCAATAAAGGAACGAACTATGAAAAACTTTATCTGG 187
||| ||||||||||||||||||| |||||||||||| |||| |||||| |||||||| |
Sbjct 116 GCTCTGATTTCAGAGTTATGAGTGACAATAAAGGAACCAACTTTGAAAACCTTTATCTTG 175
Query 188 GTATGGATTTTGGTACTTCTGGAGGTCGATTTACAGTTATTGATGAGCAAGGAGAGATTA 247
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 176 GTATGGATTTTGGTACTTCTGGAGCTCGATTTACAGTTATTGATGAGCAAGGAGAGATTA 235
Query 248 AAGCACAAGGCAAAAGAGAATATCCTCCTTTCATGAAAGAAGAAAGCATGGGTTGGGCAA 307
|| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
Sbjct 236 AATCACAAGGCAAAAGAGAATATCCTCCTTTCATGAAAGAAGAAAGAATGGATTGGGTGA 295
Query 308 GCTCATGGAAAGCAACTCTTTTTTCGTTGCTAGAGGACATTCCCGTCACAGTTCGCTCCC 367
||||||||||||||||||||||||| ||||||||||| |||||| | || ||||||||||
Sbjct 296 GCTCATGGAAAGCAACTCTTTTTTCATTGCTAGAGGATATTCCCATTACTGTTCGCTCCC 355
Query 368 TCGTCTCATCCATTTCGCTTGATGGAACTTCTGCAACTACTCTCATCTT-AA-A-CAGTG 424
||||||||||||||||||||||||||||||||||||| |||||||| || || | |||||
Sbjct 356 TCGTCTCATCCATTTCGCTTGATGGAACTTCTGCAACAACTCTCATTTTAAACAGCAGTG 415
Query 425 AGAGTGGAGAAGTTCTGTGTCAACCTTATCTCTACAACCAGAGCTGCCCTGATGCTCTGC 484
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
Sbjct 416 AGAGTGGAGAAGTTCTGTGTCAACCTTTTCTCTACAATCAGAGCTGCCCTGATGCTCTCC 475
Query 485 CAGAGGTCAAGTCTATAGCGCCAGCAAACCATACAGTCTGCTCTGGTACTTCTACCTTGT 544
|||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||
Sbjct 476 CAGAGGTCAAGTCTATAGCGCCAGAAAACCACACAGTCTGCTCTGGTTCTTCTACCTTGT 535
Query 545 GCAAACTTGTCTCATGGTGGAACACTGAGGTGCCAAACAGAGAATCAGCGGTATTGCTGC 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GCAAACTTGTCTCATGGTGGAACACTGAGGTGCCAAACAGAGAATCAGCGGTATTGCTGC 595
Query 605 ATCAGGCAGACTGGTTGTTGTGGTTACTTCACGGTAGACTCGGAGTGTCAGATTACAACA 664
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 596 ATCAGGCAGACTGGTTGTTGTGGTTACTTCACGGTAGACTCGGTGTGTCAGATTACAATA 655
Query 665 ATGCCTTGAAGGTGGGCTATGATCCTGAGAGTGAATCATATCCATCATGGTTGCTAGGTC 724
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 656 ACGCCTTGAAGGTGGGCTATGATCCTGAGAGTGAATCATATCCATCATGGTTGCTAAGTC 715
Query 725 AGCCTTATTCTCAGTTATTACCTAAGGTGCAAGCTCCTGGAACATCAATAGGCAATCTGA 784
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 716 AGCCTTATTCTCAGTTATTACCTGTGGTGCAAGCTCCTGGAACATCAATATGCAATCTGA 775
Query 785 AAGAAAGCTTTACAAGGCAATTTGGATTTCCAGATGATTGCATTGTCTGCACCGGTACTA 844
|||||||| ||| ||| ||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 776 AAGAAAGCATTAGAAGCCAATTCGGGTTTCCGGATGATTGCATTGTCTGCACCGGTACTA 835
Query 845 CTGATAGCATAGCTGCATTTCTTGCAGCACGCGCGACTGAACCTGGGAAAGCAGTAACTT 904
|||||||||||||||||||||| |||||||| |||||| |||||||||||||||| ||||
Sbjct 836 CTGATAGCATAGCTGCATTTCTAGCAGCACGTGCGACTCAACCTGGGAAAGCAGTGACTT 895
Query 905 CATTGGGTTCGACCTTAGCCATCAAACTTCTCAGCACCAAAAGAGTTGATGATGCGAGGT 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CATTGGGTTCGACCTTAGCCATCAAACTTCTCAGCACCAAAAGAGTTGATGATGCGAGGT 955
Query 965 ATGGAGTCTACAGCCACCGCCTGGATGACAAATGGTTGGTCGGAGGAGCTTCCAACACTG 1024
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 956 ATGGAGTCTACAGTCACCGCCTGGATGACAAATGGTTGGTCGGAGGAGCTTCCAATACTG 1015
Query 1025 GTGGAGCCATTCTCAGACAGCTCTTTAGTGACGAACAGTTAGAGAGACTGAGCCAAGAAA 1084
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1016 GTGGAGCCATTCTCAGACAGCTCTTTAATGACGAACAATTAGAGAGACTGAGCCAAGAAA 1075
Query 1085 TCAATCCTATGGTCGGATCTCCTCTAGATTACTATCCTTTGCAAAGC-AGCGGTGAAAGA 1143
||||||||||||||| |||||||||||||||||||||| ||| || | ||||||||||||
Sbjct 1076 TCAATCCTATGGTCGCATCTCCTCTAGATTACTATCCTCTGCTAA-CTAGCGGTGAAAGA 1134
Query 1144 TTTCCCATTGCTGATCCTAACTTGGCTCCCAGATTACTTCCACGCCCAGAAAGCGACGTT 1203
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TTTCCCATAGCTGATCCTAACTTGGCTCCCAGATTACTTCCACGCCCAGAAAGCGACGTT 1194
Query 1204 GAATTCTTGCATGGTATATTGGAATCAATCGCACGTATTGAGGGGAAAGGCTACAAGTTG 1263
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GAATACTTGCATGGTATCTTGGAATCAATCGCACGTATTGAGGGGAAAGGCTACAAGTTG 1254
Query 1264 CTGAAAGAGTTGGGAGCAACGGAGGCCGAGGAAGTGTTGACAGCAGGAGGTGGAGCCAAG 1323
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1255 CTGAAAGAGATGGGAGCAACGGAGGCCGAGGAAGTGTGGACAGCAGGAGGTGGAGCCAAG 1314
Query 1324 AATGACAAGTGGATAAAGATAAGGCAGCGAGTTTTGGGTTTGCCTGTGAAAAAAGC-CGT 1382
||||||||||||||||||||||||||||| ||| | || |||||||||||||| || | |
Sbjct 1315 AATGACAAGTGGATAAAGATAAGGCAGCGCGTTCTAGGCTTGCCTGTGAAAAAGGCTC-T 1373
Query 1383 CCACACTGAAGCTTCCTATGGAGCTTCTCTTCTTGCGCTAAAGGGCGCAAAA 1434
|||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1374 CCACACGGAAGCTTCCTATGGAGCTTCTCTTCTTGCGTTAAAGGGCGCAAAA 1425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58468526075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5