BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21380.1
Length=3614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481003 jgi|Araly1|481003|fgenesh2_kg.4__63__AT2G21380.1 5668 0.0
Ahg327857 jgi|Araly1|327857|fgenesh1_pm.C_scaffold_7000084 2359 0.0
Ahg952455 jgi|Araly1|952455|scaffold_7400001.1 424 3e-117
Ahg949340 jgi|Araly1|949340|scaffold_801227.1 248 2e-64
> Ahg481003 jgi|Araly1|481003|fgenesh2_kg.4__63__AT2G21380.1
Length=3578
Score = 5668 bits (3069), Expect = 0.0
Identities = 3421/3587 (95%), Gaps = 39/3587 (1%)
Strand=Plus/Plus
Query 29 agaaaga-cgaagaagatgaagagC--A-TATTGCTTTTTCTGTCCCCAGCCATATTTTT 84
||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 7 AGAAAGAGAGAAGAAGATGAAGAGCATATTATTGCTTTTTCTGTCCCCAGCCATATTTTC 66
Query 85 ACCGAGTCCGTAACCGAGTTTGAACGAGTTAGTGGATGGCTTCATCGTCGTCTAGAACTA 144
||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 67 ACCGATTTCGTAACCGAGTTTGAACGAGTTAGTGGATGGCTTCATCGTCATCTAGAACTA 126
Query 145 GGAGTCGTTCTCC-TTTCTCGCACCGTAGACCTCCGAGTCCTTACTCTTCGGCTTCGTCT 203
||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 127 GGAGTCGTTCTCCATTT-TCTCACCGTAGACCTCCGAGTCCTTACTCTTCGGCTTCGTCT 185
Query 204 ACTTCTTCGTCTCTTATAAATAATCGTCTATTACCTCGTTCTTCTTCCACACCTACTTCT 263
|||||||||||| ||||||| |||||| |||||||||| |||||||||||||||||||||
Sbjct 186 ACTTCTTCGTCTTTTATAAACAATCGTTTATTACCTCGCTCTTCTTCCACACCTACTTCT 245
Query 264 ACCGTTTACAATTCCGGCGGTGTAACCGGGTCCCGATCTATGTCGATTACTCGCACCATT 323
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 246 ACCGTTTACAATTCCGGCAGTGTAAGCGGGTCCCGATCTATGTCGATTACTCGCACCATT 305
Query 324 TCCGATTCCGGTCCCATCGGCGGCTCCGGGACTTATGGAGCCCAA---T-CG-----TAC 374
|||||||||||||| |||||||||||||||||||||||||| ||| | || |||
Sbjct 306 TCCGATTCCGGTCCAATCGGCGGCTCCGGGACTTATGGAGCGCAATCGTCCGTCACTTAC 365
Query 375 CCATCGGAGGGGCTCATTGGCGAGTCTGGGCAGACGATTACCTCTGAGCGAGATAGCATC 434
|||||||||||||| ||||||||||||| || ||| || |||||||||||||||||||||
Sbjct 366 CCATCGGAGGGGCTGATTGGCGAGTCTGTGCCGACTATCACCTCTGAGCGAGATAGCATC 425
Query 435 TCCGTCACCGTTCGATTTCGTCCGATGAGTGAGAGGGAGTATCAACGAGGAGATGAGATT 494
||||||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||||
Sbjct 426 TCCGTCACCGTTCGATTTCGTCCGATGAGTGAGAGAGAGTATCAAAGGGGAGACGAGATT 485
Query 495 GTTTGGTATCCTGACGCAGATAAGATGGTCAGGAATGAATACAATCCCCTCACAGCTTAC 554
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 GTTTGGTATCCTGACGCGGATAAGATGGTCAGGAATGAATACAATCCCCTCACAGCTTAC 545
Query 555 GCATTTGATAAAGTTTTTGGACCACAGTCAACAACTCCAGAAGTATATGACGTAGCTGCT 614
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 546 GCATTTGATAAAGTTTTTGGACCACAATCAACAACTCCAGAAGTATATGACGTAGCTGCT 605
Query 615 AAACCTGTAGTCAAGGCTGCTATGGAAGGTGTTAACGGAACCGTTTTTGCTTATGGTGTT 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 AAACCTGTAGTCAAGGCTGCTATGGAAGGTGTTAACGGAACCGTTTTTGCTTATGGTGTT 665
Query 675 ACAAGCAGTGGAAAGACACATACAATGCATGGTGATCA-AGATTTTCCTGGAATCATACC 733
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 666 ACAAGCAGTGGAAAGACACATACAATGCATGGTGATCACA-ATTTTCCTGGAATCATACC 724
Query 734 ATTAGCAATAAAAGACGTGTTCAGTATCATTCAGGAAACCACCGGAAGAGAGTTTCTGCT 793
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 725 ATTAGCAATAAAAGACGTGTTCAGTATCATCCAGGAAACCACTGGAAGAGAGTTCCTGCT 784
Query 794 CCGTGTTTCATATCTTGAAATATACAATGAGGTGATAAATGACTTACTGGATCCAACAGG 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 CCGTGTTTCATATCTTGAAATATACAATGAGGTGATAAATGACTTACTGGATCCAACAGG 844
Query 854 GCAAAATTTACGTATTAGAGAGGATTCCCAGGGCACTTACGTTGAGGGTATCAAGGAAGA 913
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 GCAAAATTTACGAATTAGAGAGGATTCCCAGGGCACTTACGTTGAGGGTATCAAGGAAGA 904
Query 914 AGTCGTTTTGTCTCCAGGCCATGCGTTATCTTTCATTGCAGCTGGGGAAGAACATCGTCA 973
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 905 AGTCGTATTGTCTCCAGGCCATGCGCTATCTTTCATTGCAGCTGGGGAAGAACATCGTCA 964
Query 974 TGTTGGTTCAAATAATTTCAACCTGATGAGCAGCAGAAGTCACACAATATTTACACTGAT 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 TGTTGGTTCAAATAATTTCAACCTGATGAGCAGCAGAAGTCACACAATATTTACACTGAT 1024
Query 1034 GATTGAAAGTAGTGCTCATGGAGACCAATATGATGGAGTTATTTTTTCTCAGCTAAATTT 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 GATTGAAAGTAGTGCTCATGGAGACCAATATGATGGAGTTATTTTTTCTCAGCTAAATTT 1084
Query 1094 GATTGACTTAGCTGGATCTGAGAGTTCCAAAACTGAGACAACGGGACTGAGGAGGAAAGA 1153
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 GATTGACTTAGCTGGATCCGAGAGTTCCAAAACTGAGACAACGGGACTGAGGAGGAAAGA 1144
Query 1154 GGGTGCATACATCAACAAGAGTCTTCTGACTCTTGGAACTGTGATTGGAAAACTGACTGA 1213
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1145 GGGTGCATACATCAACAAGAGTCTTCTGACTCTTGGAACTGTAATTGGAAAACTGACTGA 1204
Query 1214 GGGCAAGACAACTCATGTCCCATTTCGGGACTCTAAGCTAACTCGTCTTCTGCAATCTTC 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 GGGCAAGACAACTCATGTCCCATTTCGGGACTCTAAGCTAACTCGTCTTCTGCAATCTTC 1264
Query 1274 ACTGAGTGGGCATGGGCATGTATCGCTCATATGTACAGTTACTCCTGCGTCAAGCAGTAC 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 ACTGAGTGGGCATGGGCATGTATCGCTCATATGTACAGTTACTCCTGCGTCAAGCAGTAC 1324
Query 1334 CGAGGAAACTCATAATACTTTGAAGTTTGCCAGCAGGGCAAAGAGAATTGAAATTAATGC 1393
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 AGAGGAAACTCATAATACTTTGAAGTTTGCCAGCAGGGCAAAGAGAATTGAAATTAATGC 1384
Query 1394 CTCACGCAATAAGATCATAGATGAGAAGTCATTGATTAAGAAATATCAGAAAGAAATCTC 1453
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 CTCGCGCAATAAGATCATAGATGAGAAGTCATTGATTAAGAAATATCAGAAAGAAATCTC 1444
Query 1454 GACCCTCAAAGTCGAACTTGATCAGCTAAGAAGGGGTGTGCTAGTTGGTGTCAGTCACGA 1513
|||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1445 GACCCTCAGAGACGAACTTGATCAGCTAAGAAGGGGTGTGCTTGTTGGTGTCAGTCACGA 1504
Query 1514 AGAGTTATTGAGCCTAAAGCAACAGCTACAAGAAGGTCAAGTGAAGATGCAATCAAGATT 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 AGAGTTATTGAGCCTAAAGCAACAGCTACAAGAAGGTCAAGTGAAGATGCAATCAAGATT 1564
Query 1574 GGAGGAAGAAGAAGAAGCTAAAGCAGCTCTAATGAGTAGAATCCAAAAGCTTACAAAGCT 1633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 GGAGGAAGAAGAAGAAGCTAAAGCAGCTCTAATGAGTAGAATCCAAAAGCTTACAAAGCT 1624
Query 1634 CATACTTGTCTCTACCAAGAATTCTATTCCTGGATATTTAGGTGACACACCAGCTCATTC 1693
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1625 CATACTCGTCTCTACCAAGAATTCTATTCCTGGATATTTAGGTGATACACCAGCTCAT-C 1683
Query 1694 T-CGCAGCATTTCTGCTGGTAAAGATGATAAGTTAGACTCTCTGCTCTTGGATAGTGATA 1752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1684 AGCGCAGCATTTCTGCTGGTAAAGATGATAAGTTAGACTCTCTGCTCTTGGATAGTGATA 1743
Query 1753 ATCTGGCATCTCCATCTTCGACTCTCTCTCTAGCATCAGATGCGCGACGGTCTTCCAGCA 1812
||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||
Sbjct 1744 ATCTGGCATCTCCATCTTCAACTCTGTCTCTAGCATCAGATGCGAGACGGTCTTCCAGCA 1803
Query 1813 AGTTTAAGGATGAAAACTCTCCAGTTGGTTCTCGTGCAGAATTAACTCAAGGCGTTATGA 1872
|||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct 1804 AGTTTAAGGATGAAAACTCTCCGGTTGGTTCTGGGGCAGAATTAACTCAAGGCGTTATGA 1863
Query 1873 CTCCCGATGAAATGGATCTCCTCGTTGAGCAAGTTAAGATGCTTGCTGGTGAGATAGCTT 1932
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1864 ATCCAGATGAAATGGATCTCCTCGTTGAACAAGTTAAGATGCTTGCTGGTGAGATAGCTT 1923
Query 1933 TCGGCACAAGCACACTAAAGCGTTTGGTGGATCAGTCCATGAATGATCCTGAAAACTCGA 1992
|| |||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1924 TCAGCACAAGCACTCTTAAGCGTTTGGTGGATCAGTCCATAAATGATCCTGAAAACTCGA 1983
Query 1993 AAACCCAAATCCAGAATCTAGAAA-ATGATATTCAAGAAAAGCAAAGACAAATGAAATCC 2051
||| ||||||||||||||||||| | || ||||||||||||||||||||||||| ||||
Sbjct 1984 AAATCCAAATCCAGAATCTAGAACGA-GAGATTCAAGAAAAGCAAAGACAAATGAGATCC 2042
Query 2052 TTGGAACAGAGAATAACTGAGAGTGGTGAAGCTTCAATTGCTAATGCATCATCGATTGAG 2111
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2043 TTGGAACAGCGAATAACTGAGAGTGGTGAAGCTTCAATTGCTAATGCATCATCGATTGAG 2102
Query 2112 ATGCAAGAGAAAGTTATGAGATTGATGACACAATGCAATGAGAAGAGCTTTGAGCTGGAG 2171
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2103 ATGCAACAGAAAGTTATGAGATTGATGACACAATGCAATGAGAAGAGCTTTGAGCTGGAG 2162
Query 2172 ATTATATCAGCAGATAATCGTATTCTCCAAGAACAACTACAGACAAAGTGTACCGAGAAC 2231
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2163 ATCATATCAGCAGATAATCGTATTCTCCAAGAACAACTACAGACAAAGTGTACCGAGAAC 2222
Query 2232 AATGAATTGCACGAAAAGGTGCATCTTCTAGAGCAACGATTATCGAGTCAGAAGG-CCAC 2290
||||||||||||||||||||||||||||||||| |||||||||||| ||||| || ||||
Sbjct 2223 AATGAATTGCACGAAAAGGTGCATCTTCTAGAGGAACGATTATCGAATCAGA-GGTCCAC 2281
Query 2291 ACTGTCTTGTTGTGATGTTGTGACTGAAGAGTATGTAGATGAGCTGAAAAAGAAAGTACA 2350
||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2282 ACTGTCTTGTTCTGATGCTGTGACTGAAGAGTATGTAGACGAGCTGAAAAAGAAAGTACA 2341
Query 2351 GTCTCAGGAGATTGAGAACGAA-AAGTTGAAGCTAGAGCATGTGCAGAGTGTGGAGGAGA 2409
||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||
Sbjct 2342 GTCTCAGGAGATTGAGAAC-AATAAGTTGAAGCTAGAGCATGTGCAGAATGTGGAGGAGA 2400
Query 2410 AGAGTGGATTACGAGTGCAAAATCAAAAATTAGCTGAAGAAGCTTCATATGCAAAAGAAT 2469
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 2401 AGAGTGGATTACGAGTGCAAAATCAGAAATTAGCTGAAGAAGCTTCATACGCAAAGGAAT 2460
Query 2470 TGGCCTCTGCAGCTGCTATTGAGCTGAAGAATCTAGCTGATGAAGTTACAAAGCTCTCGC 2529
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2461 TGGCCTCGGCAGCTGCTATTGAGCTGAAGAATCTAGCTGATGAAGTTACAAAGCTCTCGC 2520
Query 2530 TTCAAAACGCAAAGCTAGAAAAAGAATTAGTAGCTGCAAGAGACTTGGCAGCGGCAGCTC 2589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2521 TTCAAAACGCAAAGCTAGAAAAAGAATTAGTAGCTGCAAGAGACTTGGCAGCGGCAGCTC 2580
Query 2590 AGAAGCGTAACAACAACTCCATGAACAGCGCAGCGAACCGTAATGGAACAAGGCCAGGGA 2649
||||||||||||| | |||||||||||||| |||||||| |||||||||||||||||||
Sbjct 2581 AGAAGCGTAACAATAGCTCCATGAACAGCGTGGCGAACCGCAATGGAACAAGGCCAGGGA 2640
Query 2650 GAAAGGCAAGGATCTCAGACTCATGGAACCTCAACCAAGAAAATCTCACAATGGAATTGC 2709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2641 GAAAGGCAAGGATCTCAGACTCATGGAACCTCAACCAAGAAAATCTCACAATGGAATTGC 2700
Query 2710 AGGCAAGGAAACAGCGAGAAGCAGTACTTGAGGCTGCACTAGCTgagaaagaatacatag 2769
||||||| |||||||||||||||||||| |||||| || ||||||||||| |||||||||
Sbjct 2701 AGGCAAGAAAACAGCGAGAAGCAGTACTGGAGGCTACATTAGCTGAGAAACAATACATAG 2760
Query 2770 aagaagagtttaggaaaaaagctgaagaagcaaagagaagagaagagGCCCTTGAAAACG 2829
||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2761 AAGAAGAGTATAAGAAAAAAGCGGAAGAAGCAAAGAGAAGAGAAGAGGCCCTTGAAAACG 2820
Query 2830 ATTTAGCCAACATGTGGGTGCTTGTTGCCAAGTTGAAGAAAGCCAATAGTGGCGCCTTGT 2889
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2821 ATTTAGCCAACATGTGGGTACTTGTTGCCAAGTTGAAGAAAGCCAATAGTGGCGCCTTGT 2880
Query 2890 CAATACAAAAGAGTGACGAAGCAGAGCCTGCAAAGGAAGATGAAGTGACAGAGTTAGATA 2949
||||||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||
Sbjct 2881 CAATACAAAAGAGTGACGAAGTAGAGTCTGTAAAGGAAGATGAAGCGACAGAGTTAGATA 2940
Query 2950 ATAAGAATGAACAAAATGCAATCTTGAAAGAGAGGCAACTCGTGAATGGACATGAAGAAG 3009
|||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 2941 ATAAGAGTCAACAAAATGCAATCTTGAAAGAGAGGCAAGTCGTGGATGGACATGAAGAAG 3000
Query 3010 TAATAGTTGCCAAGGCTGAAGAGACACCAAAGGAGGAACCTCTTGTTGCTCGTCTTAAGG 3069
||||||||||||||||| ||||||||| |||||||||||| || ||||||||||||||||
Sbjct 3001 TAATAGTTGCCAAGGCTCAAGAGACACTAAAGGAGGAACCCCTCGTTGCTCGTCTTAAGG 3060
Query 3070 CAAGAATGCAAGAGATGAAAGAGAAAGAGATGAAATCTCAGGCGGCTGCAGCAGCTAATG 3129
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 3061 CAAGAATGCAAGAGATGAAGGAGAAAGAGATGAAATCGCAGGCGGCTGCAGCAGCCAATG 3120
Query 3130 CTGATGCAAACTCACATATATGTAAAGTCTGTTTTGAGTCGCCGACCGCCACAATTCTCC 3189
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 3121 CTGATGCAAACTCACATATATGTAAAGTCTGTTTTGAGTCGCCGACTGCCACAATTCTCC 3180
Query 3190 TCCCTTGCCGTCATTTCTGCCTCTGTAAATCTTGTTCACTTGCCTGCTCTGAGTGCCCAA 3249
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3181 TCCCTTGCCGTCATTTCTGCCTTTGTAAATCTTGTTCACTTGCCTGCTCTGAGTGCCCAA 3240
Query 3250 TCTGCCGAACCAAGATCTCTGATCGCCTGTTCGCCTTCCCGTCTTGACCTGCGGCAAGTA 3309
||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||
Sbjct 3241 TCTGCCGAACCAAGATCTCGGATCGCCTGTTCGCCTTCCCGTCTTGACCCGCGACAAGTC 3300
Query 3310 TAGTCACTCTCCTACACACAGTATAAGGTA-TAAAGAACTATATGGAAGTCTGTTTGTTT 3368
||||||||||||| |||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct 3301 TAGTCACTCTCCTGCACACAGTATAAGGTAATCAAGAACTATACGGAAGTCTGTTTGTTT 3360
Query 3369 GCTAACATTTTCCAGAACGGCAGGCTCGAATTCTTTTATTACAAGTTGTTTTTTGTTTTC 3428
||||| |||||||||||||||||||| ||||||||| |||||| ||| |||| |||||
Sbjct 3361 GCTAATATTTTCCAGAACGGCAGGCTAGAATTCTTTCATTACATTTTGGTTTTA-TTTTC 3419
Query 3429 TTGTATGTAATGTCTTTGTTATATCTTTCTGTTCAAAA-TGTGGTAAAGAAAGAGGAAAC 3487
||||||||||||| ||||||||||||| || ||||||| |||||||||||||||||||||
Sbjct 3420 TTGTATGTAATGTATTTGTTATATCTTCCTATTCAAAAATGTGGTAAAGAAAGAGGAAAC 3479
Query 3488 ATAACATGCTAACAGAAAAATAGGAAACATAT-C-ATAGCCGTTTCATAGTAAGTTCAAA 3545
|||||||||||||||||||| | ||||| | | | |||||||||||||||||| ||||
Sbjct 3480 ATAACATGCTAACAGAAAAACA--AAACAAAAGCGAAAGCCGTTTCATAGTAAGTGCAAA 3537
Query 3546 ATTTGAAGTAAGTA-ATTAAAAATTATTTTGCTAATTCATGAAATTT 3591
||| |||||| || ||| || |||||||||||||||||||||
Sbjct 3538 GTTTAAAGTAA-TAGATTT----TT-TTTTGCTAATTCATGAAATTT 3578
> Ahg327857 jgi|Araly1|327857|fgenesh1_pm.C_scaffold_7000084
Length=3168
Score = 2359 bits (1277), Expect = 0.0
Identities = 2079/2453 (85%), Gaps = 108/2453 (4%)
Strand=Plus/Plus
Query 195 GCTTCGTCTACTTCTTCGTCTCTTATAAATAATCGTCT-ATTACCTCGTTCTT-CTTCCA 252
||||| || |||||||| |||| | | | || ||||| ||| |||||||||| | || |
Sbjct 49 GCTTCTTCCACTTCTTCTTCTCATCTTAGCAACCGTCTCATT-CCTCGTTCTTGC-TCTA 106
Query 253 CAC-CTACTT-CTACCGTTTA-CAATTCCGGCGGTGTAACCGGGTCCCGATCTATGTCGA 309
| | || ||| || | || | ||| |||| || | || ||| |||||||||||| ||
Sbjct 107 C-CTCTGCTTCCT--CATTGATCAACTCCGCCGCCGGAATCGGCTCCCGATCTATGACGC 163
Query 310 TTACTCGCACCATT-TCCGATTCCGGTCCCATCGGCGGCTCCGGGA-C-TT---A-TGGA 362
|| ||||||| || ||||| || || | || ||||||||||| | || | ||||
Sbjct 164 CTAGTCGCACC-TTCTCCGACTCGGGGCTTAT---CGGCTCCGGGAGCTTTGGAATTGGA 219
Query 363 --GCC-CAATCGTACCCATCGGAGGGGC-TCATTGGCGA--GTCTGG-GCAGACGATTAC 415
||| | | ||||| || || | || || | || || | ||| | |||| ||||
Sbjct 220 TCGCCTGTACCTTACCCGTCAGAAGAGCTTC-TCGGTGACCCTATGGAGGAGACTATTAG 278
Query 416 CTCTGAGCGAGATAGCATCTCCGTCACCGTTCGATTTCGTCCGA-TGAGTGAGAGGGAGT 474
||||||||| ||||| || |||||||||||||| |||||||| | ||||||| || ||||
Sbjct 279 CTCTGAGCGGGATAGTATTTCCGTCACCGTTCGTTTTCGTCC-ATTGAGTGATAGAGAGT 337
Query 475 ATCAACGAGGAGATG-AGATTGTTTGGTATCCTGACGCAGATAAGA-TGGTCAGGAATGA 532
||||| ||||||||| || ||| |||||| ||||| | ||| | | |||||||| | ||
Sbjct 338 ATCAAAGAGGAGATGAAG-TTGCTTGGTACCCTGATGGTGAT-ACATTGGTCAGGCACGA 395
Query 533 ATACAATCCCCTCACAGCTTACGCATTTGATAAAGTTTTTGGACCAC-AGTCAACAACTC 591
|| ||||| ||||| ||||||||||| ||||||||||||||||||| || |||| |||
Sbjct 396 GTATAATCCACTCACTGCTTACGCATTCGATAAAGTTTTTGGACCACAAG-CAACTACTA 454
Query 592 CAGAAGTATATGACGTAGCTGCTAA-ACCTGTAGTCAAGGCTGCTATGGAAGGTGTTAAC 650
|| || ||||| |||||||| || ||| |||||||||||||| |||||||||||||||
Sbjct 455 TTGACGTTTATGATGTAGCTGC-AAGACCAGTAGTCAAGGCTGCAATGGAAGGTGTTAAC 513
Query 651 GGAACCGTTTTTGCTTATGGTGTTACAAGCAGTGGAAAGACACATACAATGCATGGTGAT 710
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 514 GGAACCGTTTTTGCTTATGGTGTGACAAGCAGTGGAAAGACACATACAATGCATGGTGAT 573
Query 711 CAAGATTTTCCTGGAATCATACCATTAGCAATAAAAGACGTGTTCAGTATCATTCAGGAA 770
||||| | |||||| |||||||| |||||||||||||||||||||||||||| |||||
Sbjct 574 CAAGAATCTCCTGGGATCATACCGCTAGCAATAAAAGACGTGTTCAGTATCATCCAGGAT 633
Query 771 ACCACC-GGAAGAGAGTTTCTGCTCCGTGTTTCATATCTTGAAATATACAATGAGGTGAT 829
| | || ||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 634 A-CTCCAGGAAGGGAGTTCCTGCTCCGTGTTTCATATCTCGAAATATACAACGAGGTGAT 692
Query 830 AAATGACTTACTGGATCCAACAGGG-CAAAATTTACGTATTAGAGAGGATTCCCAGGGCA 888
|||||| ||||||||||| || ||| |||||||||||| |||||||||||||||||||||
Sbjct 693 AAATGATTTACTGGATCCTAC-GGGCCAAAATTTACGTGTTAGAGAGGATTCCCAGGGCA 751
Query 889 CTTACGTTGAGGGTATCAAGGAAGAAGTCGTTTTGTCTCCAGGCCATGCGTTATCTTTCA 948
|||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||
Sbjct 752 CTTATGTTGAGGGTATCAAGGAAGAAGTTGTTTTGTCTCCTGGCCATGCATTATCATTCA 811
Query 949 TTGCAGCTGGGGAAGAACATCGTCATGTTGGTTCAAATAATTTCAACCTGATGAGCAGCA 1008
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 812 TTGCAGCTGGGGAAGAACATCGTCATGTTGGTTCAAATAATTTCAATTTGTTGAGCAGCA 871
Query 1009 GAAGTCACACAATATTTACACTGATGATTGAAAGTAGTGCT-CATGGAGACCAATATGAT 1067
|||||||||| ||||||||||||||| |||||||||||||| | |||||| ||||||||
Sbjct 872 GAAGTCACACTATATTTACACTGATGGTTGAAAGTAGTGCTAC-TGGAGATGAATATGAT 930
Query 1068 GGAGTTATTTTTTCTCAGCTAAATTTGATTGACTTAGCTGGATCTGAGAGTTCCAAAACT 1127
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 931 GGAGTTATATTTTCTCAACTCAATTTGATTGACTTAGCTGGATCTGAGAGTTCCAAAACT 990
Query 1128 GAGACAACGGGACTGAGGAGGAAAGAGGGTGCATACATCAACAAGAGTCTTCTGACTCTT 1187
|| ||||| ||| |||||||||| |||||| |||||||||||||||||||||| ||||||
Sbjct 991 GAAACAACTGGATTGAGGAGGAAGGAGGGTTCATACATCAACAAGAGTCTTCTAACTCTT 1050
Query 1188 GGAACTGTGATTGGAAAACTGACTGAGGGCAAGACAACTCATGTCCCATTTCGGGACTCT 1247
|||||||||||||||||||| | |||||| ||| ||||||| | |||| ||| ||||||
Sbjct 1051 GGAACTGTGATTGGAAAACTTAGTGAGGGTAAGGCAACTCACATTCCATATCGTGACTCT 1110
Query 1248 AAGCTAACTCGTCTTCTGCAATCTTCACTGAGTGGGCATGGGCATGTATCGCTCATATGT 1307
||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||
Sbjct 1111 AAGCTAACTCGTCTTCTGCAATCTTCATTAAGTGGTCATGGGCATGTCTCGCTCATATGT 1170
Query 1308 ACAGTTACTCCTGCGTCAAGCAGTACCGAGGAAACTCATAATACTTTGAAGTTTGCCAGC 1367
||| ||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1171 ACAATTACTCCTGCGTCGAGCAGTAGTGAGGAAACTCATAATACATTGAAGTTTGCCAGC 1230
Query 1368 AGGGCAAAGAGAATTGAAAT-TAATGCCTCACGCAATAAGATCATAGATGAGAAGTCATT 1426
||||||||||| || ||||| || ||| ||||||||| |||| |||||||||||||||||
Sbjct 1231 AGGGCAAAGAGTATAGAAATATA-TGCTTCACGCAATCAGATTATAGATGAGAAGTCATT 1289
Query 1427 GATTAAGAAATATCAGAA-AGAAATCTCGACCCTCAAAGTCGAACTTGATCAGCTAAGAA 1485
|||||||||||||| || ||||||||| ||||||||| | |||||||||||||| ||||
Sbjct 1290 AATTAAGAAATATCA-AAGAGAAATCTCAACCCTCAAACTAGAACTTGATCAGCTTAGAA 1348
Query 1486 GGGGTGTGCTAGTTGGTGTCAGTCACGAAGAGTTATTGAGCCTAAAGCAACAGCTACAAG 1545
||||| |||| |||||||||||||| ||||||||| ||||| ||||||||||| || |||
Sbjct 1349 GGGGTATGCTTGTTGGTGTCAGTCATGAAGAGTTAATGAGCTTAAAGCAACAGTTAGAAG 1408
Query 1546 AAGGTCAAGTGAAGATGCAATCAAGATTGGAGGAAGAAGAAGAAGCTAAAGCAGCTCTAA 1605
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1409 AAGGTCAAGTGAAAATGCAATCAAGATTGGAGGAAGAAGAAGAAGCCAAAGCAGCTCTAA 1468
Query 1606 TGAGTAGAATCCAAAAGCTTACAAAGCTCATACTTGTCTCTACCAAGAATTCTATTCCTG 1665
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1469 TGAGCAGAATCCAAAAGCTTACCAAGCTCATACTCGTCTCTACCAAGAATTCTATTCCTG 1528
Query 1666 GATATTTAGGTGACACACC-AGCTCATTCT-CGCAG-CATTTCTGCTGGTAAAGATGATA 1722
||||||| ||||| | ||| | ||||| | ||||| | | |||||||||||||||||||
Sbjct 1529 GATATTTGGGTGATATACCTA-CTCAT-CAACGCAGTC-TCTCTGCTGGTAAAGATGATA 1585
Query 1723 AGTTAGACTCTCTGCTCTTGGATAGTGATAATCTGGCATCTCCATCTTCGACTCTCT--C 1780
| || || ||||| || ||||| |||||| |||||| ||||||||||||||| || | |
Sbjct 1586 AATTCGATTCTCTACTGTTGGAAAGTGATCATCTGGGATCTCCATCTTCGAC-CT-TGGC 1643
Query 1781 TCTAGCATCAGATG---C----G-------CGAC-GG---TCTTCCAGCAAGTTTAAGGA 1822
||| | |||||| | | | | || || ||||| |||||||| || ||
Sbjct 1644 TCTTGTATCAGAAGGTTCTTTAGGTTTTAACCACAGGCGATCTTCTAGCAAGTTGAATGA 1703
Query 1823 TGAAAACTCTCCAGTTGGTTCTCGTGCAGAATTAACTCAAGGCGTTATGACTCCCGATGA 1882
|||||||| || | ||| | ||||||| |||||||| || ||||| || |||||
Sbjct 1704 CGAAAACTCACC-G--GGT----G--CAGAATTTACTCAAGGTGTCATGACGCCAGATGA 1754
Query 1883 AATGGATCTCCTCGTTGAGCAAGTTAAGATGCTTGCTGGTGAGATAGCTTTCGGCACAAG 1942
||| || || || ||||| ||||||||||||||||||||||||||||||||| | || ||
Sbjct 1755 AATCGACCTTCTGGTTGAACAAGTTAAGATGCTTGCTGGTGAGATAGCTTTCAGTACGAG 1814
Query 1943 CACACTAAAGCGTTTGGTGGATCAGTCCATGAATGATCCTGAAAACTCGA-AAACCCAAA 2001
|||||||||||||||||||||||||||| | |||||||| |||||||| | |||| || |
Sbjct 1815 CACACTAAAGCGTTTGGTGGATCAGTCCGTAAATGATCCGGAAAACTC-ACAAACTCAGA 1873
Query 2002 TCCAGAATCTAGAAAATGATATTCAAGAAAAGCAAAGACAAATGAAATCCTTGGAACAGA 2061
| |||||||| ||| || ||||| ||||||||||| ||||||| | |||||||||||
Sbjct 1874 TACAGAATCTGGAACGCGAGATTCACGAAAAGCAAAGGCAAATGAGAGCCTTGGAACAGC 1933
Query 2062 GAATAACTGAGAGTGGTGAAGCTTCAATTGCTAATGCATCATC-GATTGAGATGCAAGAG 2120
|||| |||||||||||||||||||||||| || ||||||| | ||||||||||| ||
Sbjct 1934 TCATAATTGAGAGTGGTGAAGCTTCAATTGCCAACGCATCATTAG-TTGAGATGCAACAG 1992
Query 2121 AAAGTTATGAGAT-TGATGACACAATGCAATGAGAAGAGCTTTGAGCTGGAGATTATATC 2179
||||||||||| | ||||||| || ||||||||||||||||||||||||||||| | |||
Sbjct 1993 AAAGTTATGAG-TCTGATGACCCAGTGCAATGAGAAGAGCTTTGAGCTGGAGATCAAATC 2051
Query 2180 AGCAGATAATCGTATTCTCCAAGAACAACTACAGACAAAGTGTACCGAGAACAATGAATT 2239
||| |||||| | |||||||||||||||||||||| |||||||||||||||||| ||| |
Sbjct 2052 AGCTGATAATTGCATTCTCCAAGAACAACTACAGAAAAAGTGTACCGAGAACAAAGAACT 2111
Query 2240 GCACGAAAAGGTGCATCTTCTAGAGCAACGATT-A-T-C-G-A----GTCAGAAGGCCAC 2290
|| ||||||||| |||||||||||||||| || | | | | | || |||| || |
Sbjct 2112 ACATGAAAAGGTGAATCTTCTAGAGCAACGCTTGAATGCAGTATCTAGTGAGAAATCCTC 2171
Query 2291 ACTGTCTTGTTGTGAT---GTTGTGA-CTGAAGAGTATGTAGATGAGCTGAAAAAGAAAG 2346
|| ||||||| ||| | || | ||| |||||||| ||| || || |||||||||
Sbjct 2172 ACCATCTTGTTCCGATAAAGCGGT-ATCTGGAGAGTATGCAGACGAACTAAAAAAGAAAA 2230
Query 2347 TACAGTCTCAGGAGATTGAGAACGAAAAGTTGAAGCTAGAGCATGTGCAGAGTGTGGAGG 2406
|||| || ||||| |||||||||||| ||||||||||||| |||||||| | | |||| |
Sbjct 2231 TACAATCACAGGAAATTGAGAACGAAGAGTTGAAGCTAGAACATGTGCAAATTCTGGAAG 2290
Query 2407 AGAAGAGTGGATTACGAGTGCAAAATCAAAAATTAGCTGAAGAAGCTTCATATGCAAAAG 2466
|||| ||||| |||||||| |||||||||||| |||||||||||||||||||||| || |
Sbjct 2291 AGAACAGTGGGTTACGAGTACAAAATCAAAAACTAGCTGAAGAAGCTTCATATGCTAAGG 2350
Query 2467 AATTGGCCTCTGCAGCTGCTATTGAGCTGAAGAATCTAGCT-GATGAAGTTACAAAGCTC 2525
| || |||||||| |||||| |||||||||| ||||| ||| | ||||| ||||| |||
Sbjct 2351 AGTTAGCCTCTGCTGCTGCTGTTGAGCTGAAAAATCTTGCTAGC-GAAGTAACAAAACTC 2409
Query 2526 TCGCTTCAAAACGCAAAGCTAGAAAAAGAATTAGTAGCTGCAAGAGACTTGGC 2578
|| || |||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 2410 TCACTACAAAACACAAAGCTAGAAAAAGAATTAGCAGCTGCAAGAGACTTGGC 2462
> Ahg952455 jgi|Araly1|952455|scaffold_7400001.1
Length=556
Score = 424 bits (229), Expect = 3e-117
Identities = 363/424 (86%), Gaps = 23/424 (5%)
Strand=Plus/Plus
Query 885 GGCACTTACGTTGAGGGTATCAAGGAAGAAGTCGTTTTGTCTCCAGGCCATGCGTTATCT 944
|||||||||||||| |||| ||||||||||| ||||| ||| |||| |||||| ||| |
Sbjct 133 GGCACTTACGTTGAATGTATTAAGGAAGAAGTTGTTTTATCTACAGGACATGCGCTATAT 192
Query 945 TTCATTGCAGCTGGGGAAGAACATCGTCATGTTGGTTCAAATAATTTCAACCTGATGAGC 1004
|||| ||| |||||| ||||||||||||||||||||||||||| | ||||| || || ||
Sbjct 193 TTCACTGCTGCTGGGAAAGAACATCGTCATGTTGGTTCAAATAGTATCAACTTGTTGGGC 252
Query 1005 AGCAGAAGTCACACAATATTTACACTGATGATTGAAAGTAGTGCTCATGGAGACCAATAT 1064
|||| |||||||||||||||||| | | | | | | ||||||||| ||||||||
Sbjct 253 AGCACAAGTCACACAATATTTAC-C-CA--A--G---G-A--GCTCATGGACACCAATAT 300
Query 1065 GATGGAGTTATTTTTTCTCAGCTAAATTTGATTGACTTAGCTGGATCTGAGAGTT-C-C- 1121
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | |
Sbjct 301 GATGGAGTTATTTTTTCTGAGCTAAGTTTGATTGACTTAGCTGGATCTGAGAGTTCCACG 360
Query 1122 A------AAACTGAGACAACGGGACTGAGGAGGAAAGAGGGTGCATACATCAACAAGAGT 1175
| ||||| ||| ||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 361 AGTTCCGAAACTAAGATAACGGGATTGAGGAGGAAAGAGGGTGCATACATCAACAATAGT 420
Query 1176 CTTCTGACTCTTGGAACTGTGATTGGAAAACTGACTGAGGGCAAGACAACTCATGTCCCA 1235
||||||||||||||||||||||||||||||||| |||| |||| |||||||| |||||||
Sbjct 421 CTTCTGACTCTTGGAACTGTGATTGGAAAACTGTCTGACGGCAGGACAACTCCTGTCCCA 480
Query 1236 TTTCGGGACTCTAAGCTAACTCGTCTTCTGCAATCTTCACTGAGTGGGCA-TGGGCATGT 1294
||||| ||||||| ||||||| ||||||| ||||||||| || ||||||| | | ||| |
Sbjct 481 TTTCGAGACTCTACGCTAACTTGTCTTCTCCAATCTTCATTGTGTGGGCACTAG-CATAT 539
Query 1295 ATCG 1298
||||
Sbjct 540 ATCG 543
> Ahg949340 jgi|Araly1|949340|scaffold_801227.1
Length=511
Score = 248 bits (134), Expect = 2e-64
Identities = 192/218 (88%), Gaps = 11/218 (5%)
Strand=Plus/Plus
Query 1091 TTTGATTGACTTAGCTGGATCTGAGAGTT-C-C-A------AAACTGAGACAACGGGACT 1141
||||||||||||||||||||||||||||| | | | ||||| ||| ||||||| |
Sbjct 282 TTTGATTGACTTAGCTGGATCTGAGAGTTCCACGAGTTCCGAAACTAAGATAACGGGATT 341
Query 1142 GAGGAGGAAAGAGGGTGCATACATCAACAAGAGTCTTCTGACTCTTGGAACTGTGATTGG 1201
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 342 GAGGAGGAAAGAGGGTGCATACATCAACAATAGTCTTCTGACTCTTGGAACTGTGATTGG 401
Query 1202 AAAACTGACTGAGGGCAAGACAACTCATGTCCCATTTCGGGACTCTAAGCTAACTCGTCT 1261
||||||| |||| |||| ||||||||||||||||||||| ||||||| ||||||| ||||
Sbjct 402 AAAACTGTCTGACGGCAGGACAACTCATGTCCCATTTCGAGACTCTACGCTAACTTGTCT 461
Query 1262 TCTGCAATCTTCACTGAGTGGGCA-TGGGCATGTATCG 1298
||| ||||||||| || ||||||| | | ||| |||||
Sbjct 462 TCTCCAATCTTCATTGTGTGGGCACTAG-CATATATCG 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136512514351
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5