BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G21400.1

Length=685
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg319991 jgi|Araly1|319991|fgenesh1_pm.C_scaffold_4000048           721    0.0  
  Ahg937966 jgi|Araly1|937966|scaffold_502157.1                       76.8    2e-13


> Ahg319991 jgi|Araly1|319991|fgenesh1_pm.C_scaffold_4000048
Length=531

 Score =  721 bits (390),  Expect = 0.0
 Identities = 487/533 (91%), Gaps = 10/533 (2%)
 Strand=Plus/Plus

Query  1    ATGATGATGATAATGGGGAGAAAATGTGAAGATTGTGGGAATCAAGCGAAGAAAGATTGT  60
            ||||||||||||||||| ||||  |||||||||||||| |||||||| |||||||| |||
Sbjct  1    ATGATGATGATAATGGGAAGAAGGTGTGAAGATTGTGGTAATCAAGCAAAGAAAGAGTGT  60

Query  61   GTGTACATGAGATGCAGAACTTGCTGCAAATCCAAAGCCTTCCATTGCCAAACTCACATC  120
             |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  61   TTGTACATGAGATGCAGAACTTGCTGCAAATCCAAAGCCTTTCATTGCCAAACTCACATC  120

Query  121  AAGAGCACTTGGGTTCCTGCCTATAGAAGATCTCATCACAAACACCAATCGCAA-C-C--  176
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |  
Sbjct  121  AAGAGCACTTGGGTTCCTGCCTATAGAAGACCTCATCACAAACACCAATCGCAATCGCAA  180

Query  177  --GCTCTCTACTAGTATCCCAAAAGGTGTACAAATCCACACTACTCCTGG-ACATTTTCC  233
              || ||||||||||| ||||||| |||||||||| | |||||||| ||| |||||||||
Sbjct  181  CCGCCCTCTACTAGTAACCCAAAACGTGTACAAATTCGCACTACTC-TGGGACATTTTCC  239

Query  234  GGCAGAGTTGAGTTCCCTAGCAGATTTCCGATGCGTAAAAGTGAGTTCAATCGATGATGG  293
            ||||||||||||||| || || |||||||||||||||||||||||||||||||| |||||
Sbjct  240  GGCAGAGTTGAGTTCTCTGGCTGATTTCCGATGCGTAAAAGTGAGTTCAATCGACGATGG  299

Query  294  AAAAGAGCAATATGCTTATCAGACCACGGTGAACATTGGAGGACATGTTTTCAGAGGGAT  353
            ||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct  300  AAAGGAGCAATACGCTTATCAGACGACGGTGAACATCGGAGGACATGTTTTCAGAGGGAT  359

Query  354  TCTTCACGATCAAGGACTCCACAAAGTGATGGTAGATCATCATTATAATAAAAATAGTAA  413
            ||||||||||||||||||| |  ||| |||| ||||||||||||||||||||||||||||
Sbjct  360  TCTTCACGATCAAGGACTCGAGGAAGGGATGATAGATCATCATTATAATAAAAATAGTAA  419

Query  414  TAATCATCAAGAGTTACTT-ACTCCTTCAACTTCTTCATGTCCCTTGAAGATCACAAGTC  472
            |||||||||||||| |||| | ||||||||| |||||||||||||||| || ||| ||||
Sbjct  420  TAATCATCAAGAGTCACTTCA-TCCTTCAACATCTTCATGTCCCTTGATGACCACTAGTC  478

Query  473  CTTTTACCGATTTCATGTTCGGTACCCGATTTTCTTCGGTCCTAAGAAGATAG  525
            |||||||||||||||||| | || ||| |||||||||||||||||||||||||
Sbjct  479  CTTTTACCGATTTCATGTCCCGTGCCCAATTTTCTTCGGTCCTAAGAAGATAG  531


> Ahg937966 jgi|Araly1|937966|scaffold_502157.1
Length=1151

 Score = 76.8 bits (41),  Expect = 2e-13
 Identities = 95/120 (79%), Gaps = 8/120 (7%)
 Strand=Plus/Plus

Query  25   TGTGAAGATTGTGGGAATCAAGCGAAGAAAGATTGTG-TGTACATGAGATGCAGAACTTG  83
            ||| |||| |||||||||||||||||||||||||||| |  ||||||| || ||||||||
Sbjct  448  TGTCAAGACTGTGGGAATCAAGCGAAGAAAGATTGTGCTC-ACATGAGGTGTAGAACTTG  506

Query  84   CTGCAA-ATCCAAAGCCTTCCATTG-CCAAACTCACATCAAGA-GCACTTGGGTTCCTGC  140
             || || | ||   || ||| | || || | ||||| | | || |||| |||||||||||
Sbjct  507  TTGTAAGAGCCGTGGC-TTCGAGTGTCCTA-CTCACGTGA-GAAGCACGTGGGTTCCTGC  563



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25161125220


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5