BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21410.1
Length=2860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481007 jgi|Araly1|481007|fgenesh2_kg.4__67__AT2G21410.1 4183 0.0
Ahg490676 jgi|Araly1|490676|fgenesh2_kg.7__109__AT4G39080.1 2806 0.0
> Ahg481007 jgi|Araly1|481007|fgenesh2_kg.4__67__AT2G21410.1
Length=2635
Score = 4183 bits (2265), Expect = 0.0
Identities = 2534/2660 (95%), Gaps = 33/2660 (1%)
Strand=Plus/Plus
Query 72 GAGATCGGAGACATGGCGGAGAGTCACGGTGGTGGTGGTGGTTGCTGTCCGCCGATGGAT 131
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 GAGATCGGAGACATGGCGGAGAGTCAC------GGTGGTGGTTGCTGTCCGCCGATGGAT 54
Query 132 CTGATGCGGTCAGAACCGATGCAACTCGTTCAAGTCATTGTTCCCATGGAATCTGCTCAT 191
|||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 55 CTGATGCGGTCAGAGCCGATGCATCTCGTTCAAGTCATCGTTCCCATGGAATCTGCTCAT 114
Query 192 CTTACCGTCTCTTATCTCGGCGATCTCGGTCTCGTCCAGTTCAAAGATCTTAATTCTGAG 251
||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 115 CTTACCGTCTCTTATCTTGGCGATCTTGGCCTCGTCCAGTTCAAAGATCTTAATTCTGAC 174
Query 252 AAGAGCCCATTTCAAAGGACTTATGCTGCTCAGATAAAAAGATGTGGGGAAATGGCACGA 311
||||||||||||||| | ||||| ||||||||||| ||||||||||| || ||||||||
Sbjct 175 AAGAGCCCATTTCAACGCACTTACGCTGCTCAGATTAAAAGATGTGGAGAGATGGCACGG 234
Query 312 AAAATACGTTTCTTTAAAGAGCAAATGTCAAAGGCTGGAGTTACTCCCAAAGAGACCCTA 371
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 235 AAGCTACGTTTCTTCAAAGAGCAAATGTCAAAGGCTGGAGTTACTCCCAAAGAGACCATA 294
Query 372 GATAG-AGAAAATGATATTGATTTGGATGATGTAGAGGTAAAGCTTGAAGAGCTTGAAGC 430
||| | ||| | ||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 295 GAT-GAAGATATTGATATTGATTTGGATGATGTAGAGGTAAAGCTTGGAGAGCTAGAAGC 353
Query 431 TGAACTTGTTGAAATCAATGCTAATAACGACAAGTTGCAGCGGTCTTATAATGAACTTGT 490
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 354 TGAACTTGTTGAAATCAATGCTAATAATGACAAGTTGCAGCGCTCTTATAATGAACTTGT 413
Query 491 GGAGTACAAGCTCGTTCTTGAGAAGGCTGGTGAGTTTTTTGCTTCAGCCCATAGAAGTGC 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GGAGTACAAGCTCGTTCTTGAGAAGGCTGGTGAGTTTTTTGCTTCAGCCCATAGAAGTGC 473
Query 551 TACCGCTCAACAGAGTGAGATAGAAACAGAACAAGTGGGTGAAGACCTCCTGGAGGCTCC 610
|| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 474 TAACGCTCAACGGAGTGAGATAGAAACAGAACAAGTGGATGAAGACCTCCTGGAGGCTCC 533
Query 611 TCTGTTGCAGGAAGAGAAGTCTGTTGATCCCACAAAGCAAGTAAAGCTTGGATTCCTCAC 670
| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 534 TTTGTTGCAGGAAGAAAAGTCTGTTGATCCAACAAAGCAAGTAAAGCTTGGATTCCTCAC 593
Query 671 TGGACTAGTGCCTCGTGAAAAGTCTATGGTGTTCGAGAGGATCCTATTTCGTGCAACTAG 730
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TGGGCTAGTGCCTCGTGAAAAGTCTATGGTGTTCGAGAGGATCCTATTTCGTGCAACTAG 653
Query 731 GGGCAACATCTTCATACGACAGTCTGTCATTGAGGAGTCTGTTGTTGATCCCAACTCTGG 790
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 654 GGGCAACATCTTCATACGACAGTCTGTCATCGAGGAGTCCGTTGTTGATCCCAACTCTGG 713
Query 791 GGAGAAGGCTGAGAAAAATGTATTTGTCGTCTTCTATTCTGGGGAAAGAGCAAAAAGCAA 850
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 714 GGAGAAGGCTGAGAAAAATGTATTTGTTGTCTTCTATTCTGGGGAAAGAGCAAAAAGCAA 773
Query 851 AATTCTTAAGATATGTGAAGCTTTTGGGGCCAATCGCTATCCTTTCAGTGAAGATCTGGG 910
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 774 AATTCTTAAGATATGTGAAGCTTTTGGGGCCAATCGCTATCCTTTCAGCGAAGACCTGGG 833
Query 911 CAAACAAGCTCAAATGATGACTGAGGTTTCAGGTCGGTTATCAGAGCTTAAAACTACCAT 970
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GAAGCAAGCTCAAATGATGACTGAGGTTTCAGGTCGGTTATCAGAGCTTAAAACTACCAT 893
Query 971 AGGTGCTGGGTTGGATCAGCGCAACATTCTTTTAGAGACCATTGGAGATAAGTTTGAGCA 1030
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 894 AGGTGCTGGGTTGGATCACCGCAACATTCTTTTGGAGACCATTGGAGATAAATTTGAGCA 953
Query 1031 ATGGAACCTCAAGATTCGCAAAGAAAAAGCTATCTATCACACCTTGAACATGCTTAGTCT 1090
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 954 ATGGAACCTCAAGGTTCGCAAAGAAAAAGCAATCTATCACACCTTGAACATGCTTAGTCT 1013
Query 1091 TGATGTGACTAAGAAGTGCCTTGTGGGTGAAGGCTGGAGTCCTGTCTTTGCAGCAACAGA 1150
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 AGATGTGACTAAGAAGTGCCTTGTGGGTGAAGGCTGGAGTCCTGTCTTTGCAGCAACAGA 1073
Query 1151 AATTCAAGATGCATTGCATCGTGCTGCGGTTGACTCCAATTCTCAAGTTGGATCAATTTT 1210
| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1074 AGTTCAAGATGCATTGCAGCGTGCCGCGGTTGACTCCAATTCTCAAGTTGGATCAATTTT 1133
Query 1211 CCAAGTCCTGAGGACCAAAGAGATGCCTCCGACTTTTTTCCGCACAAACAAATTTACTAC 1270
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1134 CCAAGTCCTGAGGACCAAAGAGATGCCTCCAACTTTTTTCCGCACAAACAAATTTACTAC 1193
Query 1271 TGCTTTCCAGGAAATTGTTGATGCATACGGTGTGGCCAAATATCAGGAGGCCAATCCTAG 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TGCTTTCCAGGAAATTGTTGATGCATACGGTGTGGCCAAATATCAGGAGGCCAATCCTAG 1253
Query 1331 TGTATTCACAATTGTTACCTTCCCCTTCCTGTTTGCTGTTATGTTTGGTGACTGGGGTCA 1390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TGTATTCACAATTGTTACCTTCCCCTTCCTGTTTGCTGTTATGTTTGGTGACTGGGGTCA 1313
Query 1391 TGGAATCTGCCTGCTGCTTGCAACTATGTATTTAATATTGAGAGAAAAGAAACTTTCCAG 1450
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1314 TGGAATCTGCCTGCTGCTTGCAACCATGTATTTAATATTGAGAGAAAAGAAACTTTCCAG 1373
Query 1451 CCAGAAACTTGGGGATATTATGGAAATGGCTTTTGGTGGCCGTTACGTTATTTTTATGAT 1510
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 CCAGAAACTCGGGGATATTATGGAAATGGCTTTTGGTGGCCGTTACGTTATTTTTATGAT 1433
Query 1511 GTCACTATTCTCAATATACACTGGTTTAATCTACAACGAGTTCTTCTCTATACCATATCC 1570
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1434 GTCACTCTTCTCAATATACACTGGTTTAATCTACAACGAGTTCTTCTCTATACCATTTCC 1493
Query 1571 ATTGTTTGCTAGCTCAGCATACGATTGCCGTGATGTCTCTTGCAGTGAGGCTACTACAAT 1630
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1494 ATTGTTTGCTAGCTCAGCATACGAATGCCGTGATGTCTCTTGCAGTGAGGCTACTACAAT 1553
Query 1631 TGGTCTGATCAAAACCCGAGACACTTATCCATTTGGTGTGGATCCTGTGTGGCATGGTAC 1690
|||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||
Sbjct 1554 TGGTCTGATCAAAACCCGAGACACTTATCCATTTGGCGTGGATCCTGTGTGGAAAGGTAC 1613
Query 1691 CCGCAGTGAGCTACCATTCCTAAATTCGCTTAAGATGAAAATGTCAATTCTTATTGGAGT 1750
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1614 CCGCAGTGAGCTACCATTCCTGAATTCACTTAAGATGAAAATGTCAATTCTTATTGGAGT 1673
Query 1751 TGCACAAATGAACCTCGGAATCATAATGAGCTTCTTTAATGCAAAATTCTTCAAAAGTGC 1810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 TGCACAAATGAACCTCGGAATCATAATGAGCTTCTTTAATGCAAAATTCTTCAAAAGTGC 1733
Query 1811 TGTAAACATATGGTTCCAGTTCGTTCCCCAGATGATATTCTTGAACTGCTTGTTTGGCTA 1870
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 TGTAAACGTATGGTTCCAGTTCGTTCCCCAGATGATATTCTTGAACTGCTTGTTTGGCTA 1793
Query 1871 TCTTTCGGTCCTCATCATCATAAAGTGGTGCACTGGTTCTCAAGCAGATTTATATCACGT 1930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1794 TCTTTCGGTCCTCATCATCATAAAGTGGTGCACTGGTTCTCAAGCAGATTTATATCATGT 1853
Query 1931 AATGATCTACATGTTTCTGAGCCCTATGGATGATTTAGGAGAGAATCAGCTGTTCCCTAA 1990
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1854 AATGATCTACATGTTCCTGAGCCCTATGGATGATTTAGGAGAGAATCAGCTTTTCCCTAA 1913
Query 1991 CCAGAAAATAGTACAGCTCACATTCCTCTTTCTGGCTCTGGTTTCTGTGCCGTGGATGTT 2050
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1914 CCAGAAAATAGTACAGCTCACATTCCTCTTTCTGGCTTTGGTTTCTGTTCCGTGGATGTT 1973
Query 2051 GTTGCCAAAGCCATTCATCCTGAAAAAACAACATGAAGCTAGACATCAAGGACTGTCATA 2110
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1974 GTTGCCAAAGCCATTCATCCTGAAGAAACAACATGAAGCTAGACATCAAGGTCTGTCATA 2033
Query 2111 TGCACAGCTTGACGAGACAGATGAGAGTCTTCAAGTAGAAACAAATGGGGGAGGACATGG 2170
||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2034 CGCACATCTTGATGAGACAGATGAGAGTCTTCAAGTAGATACAAATGGGGGAGGACATGG 2093
Query 2171 ACACGAAGAGTTTGAATTCAGCGAAATCTTTGTGCACCAACTCATTCACACCATTGAGTT 2230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2094 ACACGAAGAGTTTGAATTCAGCGAAATCTTTGTGCACCAACTCATTCACACCATTGAATT 2153
Query 2231 TGTGCTTGGAGCTGTTTCCAACACTGCTTCTTATCTTCGTCTCTGGGCTCTCAGTCTCGC 2290
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2154 TGTGCTTGGAGCTGTTTCCAACACTGCTTCTTATCTTCGTCTCTGGGCCCTCAGTCTCGC 2213
Query 2291 CCACTCGGAGTTGTCGTCAGTCTTCTATGAGAAGGTCCTTCTTATGGCTTGGGGTTTCAA 2350
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 2214 CCACTCGGAGTTGTCGTCAGTCTTCTACGAGAAGGTCCTCCTTATGGCTTGGGGTTTTAA 2273
Query 2351 CAATGTCTTCATCTGGATCGTTGGAATTCT-CGTCTTCATATTTGCGACTGTGGGAGTGC 2409
|||||||||||||| ||| |||| || || ||||||||| |||||||||||||||||||
Sbjct 2274 CAATGTCTTCATCTTGATTATTGGGAT-CTTCGTCTTCATCTTTGCGACTGTGGGAGTGC 2332
Query 2410 TTCTTGTGATGGAGACATTGAGTGCATTCCTTCACGCGTTGCGTCTTCACTGGGTGGAGT 2469
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 2333 TTCTTGTGATGGAGACATTGAGTGCGTTCCTTCACGCGCTGCGTCTTCACTGGGTGGAGT 2392
Query 2470 ACCAGAACAAGTTCTACGAAGGCGATGGTTACAAGTTTGCTCCTTTCACTTTCACTCTCG 2529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2393 ACCAGAACAAGTTCTACGAAGGCGATGGTTACAAGTTTGCTCCTTTCACTTTCACTCTCG 2452
Query 2530 TCGGAAACGAAGACGAGTGATTGATGTTCCGATGTATCAG-AAATGACTTCTTCTGCGTG 2588
||||||||||||||||||||||||||||||| | || | ||||| |||||||||||||
Sbjct 2453 ACGGAAACGAAGACGAGTGATTGATGTTCCGAA-T-TCCGGAAATGCCTTCTTCTGCGTG 2510
Query 2589 TGCATATATAAGGTATGGGAAGGA----TTCTGAGTTCCTTCCCTAATCAtttttttaaa 2644
||||||| |||||||||||||||| |||||||||||||| ||||| | ||||| |||
Sbjct 2511 TGCATATGTAAGGTATGGGAAGGAAGGATTCTGAGTTCCTTCTCTAATTAATTTTT-AAA 2569
Query 2645 aaatttaagaaaataaatttggatgttttttcttcccctttttCCTTATTAGAAGG-TTA 2703
|||| | || ||||||||| |||||||||||||| || |||||||| ||
Sbjct 2570 --------GAAA-T---TT-GGATGTTTTCTCTTCCCCTTTTTCTTTTTTAGAAGGCTT- 2615
Query 2704 TATTGAATTTATTTACCTTT 2723
||||||||||||||||||||
Sbjct 2616 TATTGAATTTATTTACCTTT 2635
> Ahg490676 jgi|Araly1|490676|fgenesh2_kg.7__109__AT4G39080.1
Length=2882
Score = 2806 bits (1519), Expect = 0.0
Identities = 2175/2492 (87%), Gaps = 44/2492 (2%)
Strand=Plus/Plus
Query 84 ATGGCGGAGAGTCACGGTGGTGGTGGTGGTTGCTGTCCGCCGATGGATCTGATGCGGTCA 143
|||||||| || ||| ||||| ||||| || ||||||||||||||||||||||| |||
Sbjct 107 ATGGCGGAAAG---CGGCGGTGGCGGTGGCTGTTGTCCGCCGATGGATCTGATGCGTTCA 163
Query 144 GA-ACCGATGCAACTCGTTCAAG-TCATTGTTCCCATGGAATCTGCTCATCTTACCGTCT 201
|| | |||||||||| |||| || |||||||||||||||||||||||||||| |||||||
Sbjct 164 GAGA-CGATGCAACTTGTTC-AGCTCATTGTTCCCATGGAATCTGCTCATCTCACCGTCT 221
Query 202 CTTATCTCGGCGATCTCGGTCTCGTCCAGTTCAAAGATCTTAATTCTGAGAAGAGCCCAT 261
|||| || || ||||| || |||||||| |||||||| |||||||| |||||||||||||
Sbjct 222 CTTACCTTGGAGATCTTGGCCTCGTCCAATTCAAAGACCTTAATTCAGAGAAGAGCCCAT 281
Query 262 TTCAAAGGACTTATGCTGCTCAGATAAAAAGATGTGGGGAAATGGCACGAAAAATACGTT 321
||||| | ||||| || |||||||| ||||||||||| || |||||||||||||| ||||
Sbjct 282 TTCAACGTACTTACGCAGCTCAGATTAAAAGATGTGGAGAGATGGCACGAAAAATTCGTT 341
Query 322 TCTTTAAAGAGCAAATGTCAAAGGCTGGAGTTACTCCCAAAGAGACCCTAGAT-AGAGAA 380
|||| | ||| ||||||||||| || |||||| | |||| || | |||| | | ||||
Sbjct 342 TCTTCAGAGATCAAATGTCAAAAGCAGGAGTTCCAGCCAAGGAAATGCTAG-TGAAAGAA 400
Query 381 AATGATATTGATTTGGATGATGTAGAGGTAAAGCTTGAAGAGCTTGAAGCTGAACTTGTT 440
||||| ||||| ||||||||||| ||||| ||||||| |||||| |||||||||||||||
Sbjct 401 AATGACATTGACTTGGATGATGTTGAGGTCAAGCTTGGAGAGCTAGAAGCTGAACTTGTT 460
Query 441 GAAATCAATGCTAATAACGACAAGTTGCAGCGGTCTTATAATGAACTTGTGGAGTACAAG 500
||||||||||||||||| |||||||||||||| || |||||||| ||| |||||||||||
Sbjct 461 GAAATCAATGCTAATAATGACAAGTTGCAGCGCTCCTATAATGAGCTTATGGAGTACAAG 520
Query 501 CTCGTTCTTGAGAAGGCTGGTGAGTT-TTTTGCTTCAGCCCATAGAAGTGCTACCGCTCA 559
| |||||| |||||||||||||||| |||| |||| || ||||||||||| || | |||
Sbjct 521 TTGGTTCTTCAGAAGGCTGGTGAGTTCTTTT-CTTCTGCTCATAGAAGTGCCACAGATCA 579
Query 560 ACAGAGTGAGATAGAAACAGAACAAGTGGGTGAAGACCTCCTGGAGGCTCCTCTGTTGCA 619
|||||||||||||||| || |||||| |||||||| || |||||| ||||| |||| ||
Sbjct 580 ACAGAGTGAGATAGAATCACAACAAGCAGGTGAAGATCTGCTGGAGTCTCCTTTGTTACA 639
Query 620 GGAAGAGAAGTCTGTTGATCCCACAAAGCAAGTAAAGCTTGGATTCCTCACTGGACTAGT 679
|||||||||||| ||||| | ||||||||||||||||||||||| || || ||| ||||
Sbjct 640 GGAAGAGAAGTCCATTGATTCGACAAAGCAAGTAAAGCTTGGATTTCTTACCGGATTAGT 699
Query 680 GCCTCGTGAAAAGTCTATGGTGTTCGAGAGGATCCTATTTCGTGCAACTAGGGGCAACAT 739
|||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 700 GCCTCGTGAAAAGTCTATGGTGTTTGAGAGGATTCTATTCCGTGCGACTAGGGGCAACAT 759
Query 740 CTTCATACGACAGTCTGTCATTGAGGAGTCTGTTGTTGATCCCAACTCTGGGGAGAAGGC 799
||| || |||||| |||||||||||||| | || ||||||||||| |||||||||||||
Sbjct 760 CTTTATCCGACAGACTGTCATTGAGGAGCCGGTCATTGATCCCAACACTGGGGAGAAGGC 819
Query 800 TGAGAAAAATGTATTTGTCGTCTTCTATTCTGGGGAAAGAGCAAAAAGCAAAATTCTTAA 859
|||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 820 TGAGAAAAATGTTTTTGTTGTCTTCTATTCCGGGGAAAGAGCGAAAAGCAAAATTCTTAA 879
Query 860 GATATGTGAAGCTTTTGGGGCCAATCGCTATCCTTTCAGTGAAGATCTGGGCAA-ACAAG 918
|||||||||||||||||||| ||||| |||||||||||||| || || || || |||||
Sbjct 880 AATATGTGAAGCTTTTGGGGCTAATCGTTATCCTTTCAGTGAGGACCTTGG-AAGACAAG 938
Query 919 CTCAAATGATGACTGAGGTTTCAGGTCGGTTATCAGAGCTTAAAACTACCATAGGTGCTG 978
|||||||||| || |||||||| ||||| ||||||||||||||||| || |||| |||||
Sbjct 939 CTCAAATGATAACCGAGGTTTCGGGTCGATTATCAGAGCTTAAAACCACGATAGATGCTG 998
Query 979 GGTT-GGATCAGCGCAACATTCTTTTAG-AGACCATTGGAGATAAGTTTGAGCAATGGAA 1036
|||| || ||| || ||||||||||| | ||||||| |||||||||||||||| ||||||
Sbjct 999 GGTTAGG-TCAACGTAACATTCTTTT-GCAGACCATCGGAGATAAGTTTGAGCTATGGAA 1056
Query 1037 CCTCAAGATTCGCAAAGAAAAAGCTATCTATCACACCTTGAACATGCTTAGTCTTGATGT 1096
||||||| | |||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 1057 CCTCAAGGTACGCAAAGAGAAAGCTATCTATCATACATTGAACATGCTTAGTCTTGATGT 1116
Query 1097 GACTAAGAAGTGCCTTGTGGGTGAAGGCTGGAGTCCTGTCTTTGCAGCAACAGAAATTCA 1156
||| ||||||||||| |||| || ||||||||||||||||||||| ||| |||||||||
Sbjct 1117 GACGAAGAAGTGCCTCGTGGCCGAGGGCTGGAGTCCTGTCTTTGCATCAAAAGAAATTCA 1176
Query 1157 AGATGCATTGCATCGTGCTGCGGTTGACTCCAATTCTCAAGTTGGATCAATTTTCCAAGT 1216
||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 1177 AGATGCATTACAGCGTGCTGCCGTTGATTCCAATTCTCAAGTTGGATCAATTTTCCAGGT 1236
Query 1217 CCTGAGGACCAAAGAGAT-GCCTCCGACTT-TTTTCCGCACAAACAAATTTACTACTGCT 1274
||| |||||||||||| | || || |||| |||| |||||||||||||||||| ||||
Sbjct 1237 CCTAAGGACCAAAGAG-TCACCACCAACTTATTTT-CGCACAAACAAATTTACTTCTGCA 1294
Query 1275 TTCCAGGAAATTGTTGATGCATACGGTGTGGCCAAATATCAGGAGGCCAATCCTA-GTGT 1333
||||||||||||||||||| || ||||||||||| |||||||| |||||||| | ||||
Sbjct 1295 ATCCAGGAAATTGTTGATGCGTATGGTGTGGCCAAGTATCAGGAAGCCAATCC-AGGTGT 1353
Query 1334 ATTCACAATTGTTACCTTCCCCTTCCTGTTTGCTGTTATGTTTGGTGACTGGGGTCATGG 1393
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 1354 ATTCACAATTGTTACCTTCCCCTTCCTTTTTGCTGTTATGTTTGGTGATTGGGGGCATGG 1413
Query 1394 AATCTGCCTGCTGCTTGCAACTATGTATTTAATATTGAGAGAAAAGAAACTTTCCAGCCA 1453
||| || | ||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 1414 AATATGTATTCTGCTTGCAACGATGTACTTGATATTGAGAGAAAAGAAACTTTCCAGCCA 1473
Query 1454 GAAACTTGGGGATATTATGGAAATGGCTTTTGGTGGCCGTTACGTTATTTTTATGATGTC 1513
|||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||
Sbjct 1474 GAAACTTGGGGATATTATGGAAATGGCTTTTGGTGGGCGTTATGTCATTTTGATGATGTC 1533
Query 1514 ACTATTCTCAATATACACTGGTTTAATCTACAACGAGTTCTTCTCTATACCATATCCATT 1573
||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1534 ACTCTTCTCAATATACACTGGTCTAATCTACAACGAGTTCTTCTCTATACCATACCCATT 1593
Query 1574 GTTTGCTAGCT-CAGCATACGATTGCCGTGATGTCTCTTGCAGTGAGGCTACTACAATTG 1632
||||||| || |||| || |||||||||||| ||||||||| |||||||| |||||||
Sbjct 1594 GTTTGCTC-CTTCAGCCTATGATTGCCGTGATACCTCTTGCAGCGAGGCTACAACAATTG 1652
Query 1633 GTCTGATCAAAACCC-GAGACACTTATCCATTTGGTGTGGATCCTGTGTGGCATGGTACC 1691
|| |||| ||| | |||||||||||||||||||| | ||||||||||||||||| |
Sbjct 1653 GTTTGAT-AAAGGTCAGAGACACTTATCCATTTGGTCTAGATCCTGTGTGGCATGGAAGT 1711
Query 1692 CGCAGTGAGCTACCATTCCTAAATTCGCTTAAGATGAAAATGTCAATTCTTATTGGAGTT 1751
||||| ||||| |||||||| || ||||| ||||||||||||||||| ||| | ||||||
Sbjct 1712 CGCAGCGAGCTGCCATTCCTGAACTCGCTGAAGATGAAAATGTCAATCCTTCTCGGAGTT 1771
Query 1752 GCACAAATGAACCTCGGAATCATAATGAGCTT-CTTTAATGCAAAATTCTTCAAA--AGT 1808
| |||||||||||||||||||||||||| || ||||||||| | |||||||||| |
Sbjct 1772 TCTCAAATGAACCTCGGAATCATAATGAG-TTACTTTAATGCTAGATTCTTCAAATCAA- 1829
Query 1809 GCTGTAAACATATGGTTCCAGTTCGTTCCCCAGATGATATTCTTGAACTGCTTGTTTGGC 1868
| |||||| ||||||||||||||| ||||||| ||||||||||||||| |||||||||||
Sbjct 1830 G-TGTAAATATATGGTTCCAGTTCATTCCCCAAATGATATTCTTGAACAGCTTGTTTGGC 1888
Query 1869 TATCTTTCGGTCCTCATCATCATAAAGTGGTGCACTGGTTCTCAAGCAGATTTATATCAC 1928
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1889 TATCTCTCGGTCCTCATCATCATAAAGTGGTGCACTGGTTCTCAAGCAGATTTGTATCAT 1948
Query 1929 GTAATGATCTACATGTTTCTGAGCCCTATGGATGATTTAGGAGAGAATCAGCTGTTCCCT 1988
|||||||| || ||||| |||||||| ||||| || |||||||||||||| |||||||||
Sbjct 1949 GTAATGATATATATGTTCCTGAGCCCAATGGACGAGTTAGGAGAGAATCAACTGTTCCCT 2008
Query 1989 AACCAGAAAATAGTACAGCT-CA-CATTCCTCTTTCTGGCTCTGGTTTCTGTGCCGTGGA 2046
||||||||| ||| ||||| | | ||| ||||||||||||| |||||||| ||||| |
Sbjct 2009 CACCAGAAAACAGTGCAGCTTCTGC-TTC-TCTTTCTGGCTCTTGTTTCTGTTCCGTGTA 2066
Query 2047 TGTTG-TTGCCAAAGCCATTCATCCTGAAAAAACAACATGAAGCTAGACATCAAGGACTG 2105
||||| || |||||||| |||||| |||| ||||||||||||||||| |||||||| | |
Sbjct 2067 TGTTGCTT-CCAAAGCCGTTCATCTTGAAGAAACAACATGAAGCTAGGCATCAAGGTCAG 2125
Query 2106 TCATATGCACAGCTTGACGAGACAGATGAGAGTCTTCAAGTAGAAACAAATGGGGGAGGA 2165
| ||| ||| |||||||||||||| ||||||||||| ||||| |||| || |||
Sbjct 2126 TTATACACACCTCTTGACGAGACAGACGAGAGTCTTCATGTAGAGACAAGCGGAGGATCC 2185
Query 2166 CATGGACACGAAGAGTTTGAATTCAGCGAAATCTTTGTGCACCAACTCATTCACACCATT 2225
||||| || || ||||||||||||||||| || |||||||| || || |||||||||||
Sbjct 2186 CATGGGCATGAGGAGTTTGAATTCAGCGAGATATTTGTGCATCAGCTGATTCACACCATA 2245
Query 2226 GAGTTTGTGCTTGGAGCTGTTTCCAACACTGCTTCTTATCTTCGTCTCTGGGCTCTCAGT 2285
||||||||||||||||||||||||||||| |||||||| || ||| | ||||||||||||
Sbjct 2246 GAGTTTGTGCTTGGAGCTGTTTCCAACACCGCTTCTTACCTGCGTTTATGGGCTCTCAGT 2305
Query 2286 CTCGCCCACTCGGAGTTGTCGTCAGTCTTCTATGAGAAGGTCCTTCTTATGGCTTGGGGT 2345
|| |||||||| ||| | || ||||||||||||||||||||||| ||| | |||| |||
Sbjct 2306 CTTGCCCACTCAGAGCTATCATCAGTCTTCTATGAGAAGGTCCTCCTTCTCGCTTTTGGT 2365
Query 2346 TTCAACAATGTCTTCATCTGGATCGTTGGAATTC-TCGTCTTCATATTTGCGACTGTGGG 2404
| ||||||||| || |||||||||||||| || | |||| |||||||| ||||| |||||
Sbjct 2366 TACAACAATGTGTTGATCTGGATCGTTGGGAT-CATCGTGTTCATATTCGCGACCGTGGG 2424
Query 2405 AGTGCTT-CTTGTGATGGAGACATTGAGTGCATTCCTTCACGCGTTGCGTCTTCACTGGG 2463
|||| || || ||||||||| || | || || |||||||||||| ||||||| |||||||
Sbjct 2425 AGTG-TTGCTGGTGATGGAGTCACTAAGCGCGTTCCTTCACGCGCTGCGTCTCCACTGGG 2483
Query 2464 TGGAGTACCAGAACAAGTTCTACGAAGGCGATGGTTACAAGTTTGCTCCTTTCACTTTCA 2523
| |||| ||||| || ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 2484 TTGAGTTTCAGAATAAATTCTACGAAGGAGATGGTTACAAGTTCGCTCCTTTCACTTTCG 2543
Query 2524 CTCTCGTCGGAAACGAAGACGAGTGAT-TGAT 2554
| || || ||||||||||||||||| ||||
Sbjct 2544 TTTTCACCGCAAACGAAGACGAGTGATGTGAT 2575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107947754330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5