BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21430.1
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481008 jgi|Araly1|481008|fgenesh2_kg.4__68__AT2G21430.1 1808 0.0
> Ahg481008 jgi|Araly1|481008|fgenesh2_kg.4__68__AT2G21430.1
Length=1159
Score = 1808 bits (979), Expect = 0.0
Identities = 1099/1158 (95%), Gaps = 3/1158 (0%)
Strand=Plus/Plus
Query 46 ATCATCTTAGGGTTTTGTTCTCTGTTTCTCTTATCTTTGTGTTCGTCTCTGTTTCGGTTT 105
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||
Sbjct 5 ATCATCTTAGGGTTTTGTTCTCTGTTTCTCTTCTCTTTGTATTCGTCTCTGTTTCGATTT 64
Query 106 GTGGAGACGAAGATGTGTTGATCAGGCAAGTGGTTGATGAAACAGAGCCGAAAGTTTTGT 165
| |||||||||||| |||||||| | ||||||||||||||| | ||||||||||||||||
Sbjct 65 GCGGAGACGAAGATTTGTTGATCCGCCAAGTGGTTGATGAAGCGGAGCCGAAAGTTTTGT 124
Query 166 CATCGGAGGATCACTTTACTCTCTTCAAGAAGAAATTCGGCAAGGTTTACGGTTCCATTG 225
|||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 125 CATCGGAGGATCACTTTACTCTCTTCAAGAAGAAATTCGGGAAAGATTACGGTTCCATTG 184
Query 226 AGGAGCATTATTACAGATTCTCTGTTTTCAAAGCAAATCTCCTGCGAGCGATGCGTCACC 285
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 185 AGGAGCATTATTACAGATTCTCTGTTTTCAAAGCTAATCTCCGGCGAGCGATGCGTCACC 244
Query 286 AGAAGATGGATCCTTCTGCTCGTCACGGCGTAACGCAGTTTTCGGATCTGACTCGTTCTG 345
||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 245 AGAAGATGGATCCATCTGCTCGTCATGGCGTTACGCAGTTTTCGGATCTGACTGGTTCTG 304
Query 346 AGTTTCGGAGAAAGCATTTAGGGGTTAAAGGTGGGTTTAAGCTTCCTAAAGACGCTAATC 405
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 305 AGTTTCGGAGAAAGCATTTAGGGGTTAAAGGTGGGTTTAAGCTTCCCAAAGACGCTAATC 364
Query 406 AAGCCCCGATTCTCCCTACTCAGAATCTTCCGGAGGAGTTTGATTGGAGAGATCGCGGCG 465
|||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 365 AAGCTCCGATTCTCCCAACTCACAATCTTCCAGAGGAGTTTGATTGGAGAGATCGCGGCG 424
Query 466 CGGTTACTCCCGTGAAAAACCAGGGATCTTGTGGTTCTTGCTGGAGTTTTAGCACTACAG 525
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 425 CGGTTACTCCAGTGAAAAACCAGGGATCTTGTGGATCTTGCTGGAGTTTTAGCACTACAG 484
Query 526 GTGCCCTTGAAGGTGCTCACTTCCTCGCTACTGGCAAACTCGTTAGTCTCAGTGAACAAC 585
|||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 485 GTGCTCTTGAAGGTGCTCACTTTCTCGCGACTGGCAAACTCGTTAGCCTCAGTGAACAAC 544
Query 586 AGCTCGTCGATTGTGATCACGAGTGTGATCCAGAAGAGGAAGGTTCATGTGATTCTGGTT 645
||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct 545 AGCTCGTCGATTGTGATCATGAGTGTGATCCAGAAGAGGCAGGTTCATGTGACTCTGGTT 604
Query 646 GTAACGGTGGGCTTATGAACAGTGCCTTTGAATACACGCTTAAAACCGGAGGGCTTATGC 705
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 605 GCAACGGTGGGCTTATGAACAGTGCCTTTGAGTACACGCTTAAAACCGGAGGGCTTATGC 664
Query 706 GAGAGAAAGATTATCCTTACACCGGTACTGATGGAGGGAGCTGCAAGTTAGACAGGTCTA 765
||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 665 GAGAGGAAGATTATCCTTACACTGGTACTGATGGAGGTAGCTGCAAGTTAGACAGGTCTA 724
Query 766 AGATCGTTGCCTCTGTCTCCAACTTTAGTGTTGTGTCCATCAACGAAGATCAAATAGCTG 825
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 725 AGATCGTTGCATCTGTCTCCAACTTCAGTGTTGTGTCTATCAACGAAGATCAAATAGCTG 784
Query 826 CAAACCTTATCAAAAACGGTCCTCTAGCTGTGGCGATCAATGCAGCTTATATGCAAACCT 885
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 785 CAAACCTCGTCAAAAACGGTCCTCTAGCTGTGGCGATCAACGCAGCTTATATGCAAACCT 844
Query 886 ACATTGGAGGAGTCTCGTGTCCTTACATATGCTCGAGGCGGCTCAACCACGGTGTGTTGT 945
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 845 ACATTGGAGGAGTCTCGTGTCCTTACATATGCTCGAGGCGGCTTAACCACGGTGTGTTGT 904
Query 946 TGGTAGGTTATGGCTCGGCTGGGTTTTCTCAAGCAAGGTTAAAGGAAAAACCGTATTGGA 1005
|| | |||||||| ||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 905 TGATGGGTTATGGTTCGTCTGGGTATTCTCAAGCAAGGTTAAAGGAAAAACCGTATTGGA 964
Query 1006 TCATCAAGAACTCGTGGGGTGAGTCTTGGGGTGAGAATGGTTTCTATAAGATATGTAAAG 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 TCATCAAGAACTCGTGGGGTGAGTCTTGGGGTGAGAATGGTTTCTATAAGATATGTAAAG 1024
Query 1066 GTCGTAACATTTGCGGTGTTGACAGTTTGGTCTCCACCGTCGCTGCTACCACTTCTTGAG 1125
||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1025 GTCGTAACAATTGCGGTGTTGATAGTTTGGTCTCCACCGTCGCTGCTGCCACTTCTTGAG 1084
Query 1126 CTTTTCATTATTCTGCTGCAATGCTATTTAAAGTCTGTAAATAAATGATTAACAAAAACA 1185
||||||||||||||||||||||| |||||||| ||||||||||||| | || |||||||
Sbjct 1085 CTTTTCATTATTCTGCTGCAATGATATTTAAACTCTGTAAATAAAT--T-AAGAAAAACA 1141
Query 1186 TATTTCTTGGTGAATTCG 1203
|||||||||||||||||
Sbjct 1142 CATTTCTTGGTGAATTCG 1159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44908796226
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5