BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21440.1
Length=3265
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481009 jgi|Araly1|481009|fgenesh2_kg.4__69__AT2G21440.1 3949 0.0
> Ahg481009 jgi|Araly1|481009|fgenesh2_kg.4__69__AT2G21440.1
Length=3000
Score = 3949 bits (2138), Expect = 0.0
Identities = 2421/2556 (95%), Gaps = 25/2556 (1%)
Strand=Plus/Plus
Query 580 AAGTAGAGAAGCCAGTTGAGCGCAAAAAAGCAGAGAAGCCAATTGAGCTCAAACAAGTAG 639
|||||||||||||| ||||||||||||||| |||||||||||||||| |||| ||||||
Sbjct 453 AAGTAGAGAAGCCAATTGAGCGCAAAAAAGTAGAGAAGCCAATTGAGAGCAAAAAAGTAG 512
Query 640 AGAAGCCAT-TTGAGCGCAAACAAGTAGAGAAGCCAGTTGAGCGCAAACAAGTAGAGAAG 698
||||||| | ||||||| ||| |||||||||||||| ||||| ||||| |||||||||||
Sbjct 513 AGAAGCC-TATTGAGCGAAAAAAAGTAGAGAAGCCAATTGAGAGCAAAAAAGTAGAGAAG 571
Query 699 CCAGTTGAGCGCAAACAAGTAGAGAAGCCAATTGAGCGCAAAAGACCAACAAAGCTTCAT 758
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 572 CCAGTTGAGCGCAAACAAGTAGAGAAGCCAGTTGAGCGCAAAAGACCAACAAAGCTTCAT 631
Query 759 GTTGATTTACCTGATAAAGAAACATGTTCAGATAAGCAAAGAGTTGCAAGAACTGTAATA 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 GTTGATTTACCTGATAAAGAAACATGTTCAGATAAGCAAAGAGTTGCAAGAACTGTAATA 691
Query 819 TTTGGTGGGCTTGCTAATGCTGAGATGGCAGAGGTAGTCCATAGTCGAGTCAAAGAGATT 878
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 692 TTTGGTGGGCTTGCTAATGCTGAGATGGCAGAGGTAGTGCATAGTCGAGTCAAAGAAATT 751
Query 879 GGCACTGTGTGCTCTGTCAGATATCCCCTACCCAAAGAAGAGCTCCAACAAAATGGTCTT 938
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 GGGACTGTGTGCTCTGTCAGATATCCCCTACCCAAAGAAGAGCTCCAACAAAATGGTCTT 811
Query 939 ACCCAAGACGGATGCAGGGCAGAAGCATCAGCTGTTCTCTTTACGAGTGTCAAATCTGCT 998
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 ACCCAAGATGGATGCAGGGCAGAAGCATCAGCTGTTCTCTTTACGAGTGTCAAATCTGCT 871
Query 999 TGTGCCGCTGTTGCAAAATTACATCAAACAGA-AGTAAAGGGAAATCTCATTTGGGCTCG 1057
||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 872 TGTGCCGTTGTTGCAAAATTACATCAAACAGAGA-TAAAGGGAAATCTCATTTGGGCTCG 930
Query 1058 TCAGCTTGGTGGGGAGGGTTCAAAGGCTCAGAAGTGGAAACTTATTATCCGAAATCTTCC 1117
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 931 TCAGCTTGGTGGGGAGGGTTCAAAGGCTCAGAAGTGGAAACTAATTATACGAAATCTTCC 990
Query 1118 TTTCCAGGCTAAACCTAGTGATATTAAAGTGGTCTTTTCAGCAGTAGGGTTTGTCTGGGA 1177
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 991 TTTCCAGGCTAAACCTAGTGACATTAAAGAGGTCTTTTCAGCAGTAGGGTTTGTCTGGGA 1050
Query 1178 TGTTTTTATTCCTAAAAATTTTGAAACTGGGCTACCTAAGGGTTTTGCATTTGTCAAATT 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 TGTTTTTATTCCTAAAAATTTTGAAACTGGGCTACCTAAGGGTTTTGCATTTGTCAAATT 1110
Query 1238 CACGTGTAAGAAAGATGCAGCAAATGCAATTAAAAAGTTCAATGGGCACATGTTTGGTAA 1297
|||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||
Sbjct 1111 CACGTGTAAGAAAGATGCAGAAAATGCAATTCAAATGTTCAATGGGCACATGTTTGGTAA 1170
Query 1298 AAGGCCTATAGCTGTAGACTGGGCGGTACCTAAAAATATTTACAATGGTGCTGCTGATGC 1357
|||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 1171 AAGGCCTATAGCTGTAGACTGGGCTGTACCTAAGAATCTTTACAATGGTGCTGCTGATGC 1230
Query 1358 CACTACTGCTTCAGCAGATGGTGAC-AAAGAAGGAAGTGATGGGGACAGTGAAAACAGTA 1416
||||||||||||||||||||||||| ||| ||||||| || ||||||||||| |||||||
Sbjct 1231 CACTACTGCTTCAGCAGATGGTGACCAAA-AAGGAAGCGACGGGGACAGTGATAACAGTA 1289
Query 1417 GTGTTGATTTGGAGGAGGTTGATGAAGCTGTAGAAAGCCACCCTCCTCCAGGAGATGATA 1476
||||||||||||||||||||||||| ||||||||||| ||||| ||| ||||||||||||
Sbjct 1290 GTGTTGATTTGGAGGAGGTTGATGATGCTGTAGAAAGTCACCCACCTTCAGGAGATGATA 1349
Query 1477 CTGATGATGATGAGGACG--G-CAGTAACAAACTGACTGAATCAGATGCACTGGACAAAG 1533
|||||||||| ||||| | | |||||||||||||| |||||||||||||||||| ||||
Sbjct 1350 CTGATGATGAGGAGGAGGATGGCAGTAACAAACTGAGTGAATCAGATGCACTGGAGAAAG 1409
Query 1534 ATGTTGGGACCGATATGAACTTTGAAGATGAAGCAGATGTTGCCAGAAAGGTTCTTAAGA 1593
|||||||||||||| |||| |||||||| |||||| ||||||| ||||||||||||||||
Sbjct 1410 ATGTTGGGACCGATGTGAATTTTGAAGAGGAAGCAAATGTTGCGAGAAAGGTTCTTAAGA 1469
Query 1594 ACTTGCTTGCTTCTTCAAAAGGTTCTACTGCTACACCTGAGGGAGAGACAGAGGAATCGG 1653
|||||||||| |||||||||||||| | |||| | ||||| |||||||||||||| ||||
Sbjct 1470 ACTTGCTTGCGTCTTCAAAAGGTTCCATTGCTTCTCCTGATGGAGAGACAGAGGAGTCGG 1529
Query 1654 ATAAAAGTAAACTGAAAAGTTCATCAACTAAGCCAGTTGCTGACTCTTCTGGTGTATCTG 1713
||||||| ||||| |||| |||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1530 ATAAAAGCAAACTTAAAAATTCATCAACTAAGCCAGTCGCTGACTCTTCTGGTGTCTCTG 1589
Query 1714 AACCTTTGAAATCCGGTAAAACTAAAGTGGTGGCTCCTAAAGAGACGCAGGATAATGATG 1773
||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |
Sbjct 1590 AACCTTTGAAATCCGGTAAAACTAAAGAGGTGGCTCCTAAAGAAACGCAGGAAAATGA-G 1648
Query 1774 -ATTTTGAGAGAACTTTATTTATAAGAAACCTCCCATTTGATGTTACTAAGGAAGAAGTC 1832
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1649 CATTTTGAGAGAACTTTATTTATAAGAAACATCCCATTTGATGTTACTAAGGAAGAAGTC 1708
Query 1833 AAACAGAGGTTTACAGTATTTGGGGAAGTTGAATCTTTATCCCTGGTTCTCCACAAGGTC 1892
|||||||||||| | |||||||||||||||||||| |||| |||||||||| ||||||||
Sbjct 1709 AAACAGAGGTTTGCTGTATTTGGGGAAGTTGAATCCTTATTCCTGGTTCTCAACAAGGTC 1768
Query 1893 ACAAAACGGCCAGAAGGGACTGCTTTTGTCAAGTTCAAAACAGCAGATGCATCAGTTGCA 1952
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1769 ACAAAACGGCCAGAAGGGACTGCTTTTCTCAAGTTCAAAACAGCAGATGCATCAGTTGCA 1828
Query 1953 GCCATTTCAGCTGCCGATACTGCCTCAGGTGTCGGTGTCCTTCTTAAAGGCAGGCAACTA 2012
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1829 GCCATATCAGCTGCCAATACTGCCTCAGGTGTCGGTGTCCTTCTTAAAGGCAGGCAACTG 1888
Query 2013 AACGTTATGAGAGCTGTGGGTAAGAAAGCTGCAAAGGACATAGAACTCAAAAAGACAGAG 2072
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1889 AACGTTATGAGAGCTGTGGGTAAGAAAGCTGCACATGACATAGAACTCAAAAAGACAGAG 1948
Query 2073 GAGAAGAATGTTGACCATCGGAATCTTTATCTTGCTAAAGAAGGTCAGATCCTTGATGAT 2132
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1949 GAGAAGAATGTTGACCATCGGAATCTTTATCTTGCTAAGGAAGGTCAGATCCTTGATGAT 2008
Query 2133 ACACCTGCTGCTGAGGGTGTGTCTGCGGAAGATATGGACAAGCGACGAAGATTGCATGAA 2192
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2009 TCACCTGCTGCTGAGGGTGTGTCTGCGGAAGATATGGACAGGCGACGAAGATTGCATGAA 2068
Query 2193 AACAAGATGAAAATGCTTCAGTCTCCTAACTTCCATGTATCTCGGACAAGGCTTGTGATT 2252
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2069 AACAAGATGAAAAAGCTTCAGTCTCCTAACTTCCATGTATCTCGAACAAGGCTTGTGATC 2128
Query 2253 TATAATTTGCCCAAGTCCATGAATCCAAAGCAACTAAACAGGCTCTTAGTTGATGCTGTT 2312
|||||||| ||||| |||||||||| |||||||||| ||| |||||||||||||||||||
Sbjct 2129 TATAATTTACCCAAATCCATGAATCAAAAGCAACTACACAAGCTCTTAGTTGATGCTGTT 2188
Query 2313 ACCTCACGAGCTACAAAGCAGAAGCCGTGTATTCGACAGATCAAGTTCTTACAAAATGAG 2372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2189 ACCTCACGAGCTACAAAGCAGAAGCCGTGTATTCGACAGATCAAGTTCTTACAAAATGAG 2248
Query 2373 AAGAAAGGTAAAGTTGATACTAAGAACTACTCCCGTGGAGTTGCCTTTGTTGAGTTCACG 2432
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2249 AAGAAGGGTAAAGTTGATACTAAGAACTACTCCCGTGGAGTTGCCTTTGTCGAGTTCACG 2308
Query 2433 GAGCATGAACATGCTCTTGTAGCCCTGAGAGTACTTAACAACAATCCTGAGACATTTGGT 2492
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 2309 GAGCATGAACATGCTCTAGTGGCCCTGAGAGTACTTAACAACAATCCTGAAACATTTGGT 2368
Query 2493 CCTCAACACCGCCCTGTCATAGAATTTGCTGTTGATAATGTCCAGAAGCTGAAGATACGA 2552
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 CCCCAGCACCGCCCTGTTATAGAATTTGCTGTTGATAATGTCCAGAAGCTGAAGATACGA 2428
Query 2553 GAAGCTAAGCAGCAGCAGTTTCAGCAACGCGAGAAACACAATGAATCTGATCAGCAGCAG 2612
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 2429 GAAGCTAAGCAGCAGCAGTTTCAGCAACGTGATAAACACAATGAATCTGAGCAGCAGCAG 2488
Query 2613 GCGAACGGCGAAGCACAGGCACCTGACAATAAATACAAACGAAAAACGAGGGAAGGGGAT 2672
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2489 TCGAATGGCGAAGCACAGGCACCTGACAATAAATACAAACGAAAAACGAGGGAAGGGGAT 2548
Query 2673 AACACTGGTCCAAGGAAAGAGAATGCAGCCAGGTTTAAGAAGGGACCACGT-G---A--- 2725
||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 2549 AACACTGGTCCAAGGAAAGAGAATGCAGCCAGGTTTAAGAAGGGACCTGGTCGCCCAGGT 2608
Query 2726 --AGAGAGTAAAGAAGAAGCAAAATCCAATATAGCAGTAAAAGATAATGCAGCAGAGAAG 2783
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 2609 GTAGAGAGTAAAGAAGAAGCAAAATCCAATATAGCAGTAAAGGATGATGCAGCAGAGAAG 2668
Query 2784 AAGAGACCTATACGCACACAGGAAAAACCGTCTTCAAACAAGAAAGGCCAATTGATGAGA 2843
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2669 AAGAGACCTATACGCACACAGGAAAAACCGTCTTCAAACAAGAAAGGCCAATTAATGAGA 2728
Query 2844 CAGAAAGAGACAACTGAGAAACCAGATCCGAAA-ATTTCCAAAGATTTGAGCGAACCAAG 2902
||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||||||
Sbjct 2729 CAGAAAGAGCCAACTGAGAAACCAAATCC-AAAGATTTCCAAAGATTTGAGCGAACCAAG 2787
Query 2903 GAAGAGGAAGTTCGGGGAGGATAGAGGTGAAGAGAATAGAAATGGGCAGAGGAAGAGGAA 2962
|| |||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 2788 AAAAAGGAAGTTTGGGGAGGATAGAGGTGAAGAGAATATAAATGGACAGAGGAAGAGGAA 2847
Query 2963 GAAGCAAGGTCAAGGTCAAGGTGGTGCAGAAGTTGTGGACAAACTTGATCTGTTGATTGA 3022
|||| ||| |||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 2848 GAAG-AAG--CAAGGTCAAGGTGGTGCAGAGGTTGTGGACAAACTTGATATGTTGATTGA 2904
Query 3023 GAAATACAGGTCTAAGTTCTCGCAGAGCTCAGCCAAAACCGGCCCACAAAAACAGAGTTC 3082
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2905 GCAATACAGATCTAAGTTCTCGCAGAGCTCAGCCAAAACCGGCCCACAAAAACAGAGTTC 2964
Query 3083 CGGTCAAGTCAGGAGGTGGTTCGAATCTTGAGACTT 3118
||||||||||||||||||||||||||| ||||||||
Sbjct 2965 CGGTCAAGTCAGGAGGTGGTTCGAATCCTGAGACTT 3000
Score = 798 bits (432), Expect = 0.0
Identities = 544/597 (91%), Gaps = 12/597 (2%)
Strand=Plus/Plus
Query 96 GTATCAATGGGGAAAAACAAGAGAGAGAGGAAAGATGGAGAAGAGAAATCTCCACACG-C 154
|||||||||||||||||||||| || |||||||||||||||||| ||||||||||| | |
Sbjct 23 GTATCAATGGGGAAAAACAAGAAAGTGAGGAAAGATGGAGAAGAAAAATCTCCACA-GTC 81
Query 155 TGCCGCCACTGTTTGCGTCTCTGGCTTGCCTTATTCCATCACCAACGCACAGCTTGAAGA 214
|||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 82 TGCCACCATTGTTTGCGTCTCTGGCTTGCCTTATTCCATCACCAACGCTCAGCTTGAAGA 141
Query 215 AGCCTTTAGTGAAGTTGG-CCCAGTCAGGCGTTGCTTTCTGGTCACAAATAAAGGGT-CT 272
|||||||||||||||||| ||| ||||||||||||| |||| |||||||||| |||| ||
Sbjct 142 AGCCTTTAGTGAAGTTGGTCCC-GTCAGGCGTTGCTATCTGATCACAAATAA-GGGTTCT 199
Query 273 GATGAACACCGCGGCTTTGCGTTTGTTAAATTTGCTTTACAAGAAGATGTTAATCGTGCC 332
|||||||||| |||||||||||||||| ||||||||||| |||||||||||| ||||||
Sbjct 200 AATGAACACCGTGGCTTTGCGTTTGTTACATTTGCTTTACCAGAAGATGTTAACCGTGCC 259
Query 333 ATTGAGTTGAAGAACGGTTCTACTGTTGGGGGCCGTAGGATTACTGTTAAACAGGCTGCA 392
|||||||||||||||||||||||| |||| ||||||||||||||||||||||| || ||
Sbjct 260 ATTGAGTTGAAGAACGGTTCTACTATTGGTGGCCGTAGGATTACTGTTAAACAAGCCACA 319
Query 393 CATCGACCTTCTCTTCAAGAGCGTCGAACAAAAGCAGCTGAAGGGATCTCTGTACCTGAT 452
|||||||||||||||||||||||||||| ||||||| | |||| |||||| ||||||||
Sbjct 320 AATCGACCTTCTCTTCAAGAGCGTCGAACTAAAGCAGTTCAAGGAATCTCTTTACCTGAT 379
Query 453 AATTCCCAGGGACAGAGTGACAAGGACACTTCAATCCCTGAGACAGACGAGAAAGTATC- 511
||||||||| |||||||||| |||||||||| ||||| ||||||||||||||||| ||
Sbjct 380 GATTCCCAGGCACAGAGTGACCAGGACACTTCGATCCCCGAGACAGACGAGAAAGT-TCC 438
Query 512 TCCACCCGAGAA-AAAATTAGAGAAGCCAGTTGAGCGCAAAAAAGTAGAGAAACCAATTG 570
|||||| || || |||| ||||||||||| |||||||||||||||||||||| |||||||
Sbjct 439 TCCACCTGA-AACAAAAGTAGAGAAGCCAATTGAGCGCAAAAAAGTAGAGAAGCCAATTG 497
Query 571 AGCGCAAACAAGTAGAGAAGCC-AGTTGAGCGCAAAAAAGCAGAGAAGCCAATTGAGCTC 629
|| ||||| ||||||||||||| | ||||||| ||||||| |||||||||||||||| |
Sbjct 498 AGAGCAAAAAAGTAGAGAAGCCTA-TTGAGCGAAAAAAAGTAGAGAAGCCAATTGAGAGC 556
Query 630 AAACAAGTAGAGAAGCCATTTGAGCGCAAACAAGTAGAGAAGCCAGTTGAGCGCAAA 686
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 557 AAAAAAGTAGAGAAGCCAGTTGAGCGCAAACAAGTAGAGAAGCCAGTTGAGCGCAAA 613
Score = 130 bits (70), Expect = 7e-29
Identities = 83/89 (93%), Gaps = 1/89 (1%)
Strand=Plus/Plus
Query 518 CGAGAAAAAATTAGAGAAGCCAGTTGAGCGCAAAAAAGTAGAGAAACCAATTGAGCGCAA 577
||| |||||| ||||||||||| ||||| |||||||||||||||| ||| ||||||||||
Sbjct 527 CGA-AAAAAAGTAGAGAAGCCAATTGAGAGCAAAAAAGTAGAGAAGCCAGTTGAGCGCAA 585
Query 578 ACAAGTAGAGAAGCCAGTTGAGCGCAAAA 606
|||||||||||||||||||||||||||||
Sbjct 586 ACAAGTAGAGAAGCCAGTTGAGCGCAAAA 614
Score = 47.3 bits (25), Expect = 7e-04
Identities = 27/28 (96%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 551 AAAAGTAGAGAAACCAATTGAGCGCAAA 578
|||||||||||| |||||||||||||||
Sbjct 451 AAAAGTAGAGAAGCCAATTGAGCGCAAA 478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123230421374
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5