BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21450.1
Length=2663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481010 jgi|Araly1|481010|fgenesh2_kg.4__70__AT2G21450.1 3446 0.0
Ahg932077 jgi|Araly1|932077|scaffold_400065.1 82.4 2e-14
> Ahg481010 jgi|Araly1|481010|fgenesh2_kg.4__70__AT2G21450.1
Length=2439
Score = 3446 bits (1866), Expect = 0.0
Identities = 2067/2163 (96%), Gaps = 17/2163 (1%)
Strand=Plus/Plus
Query 293 TTAATCCTCTAGAAAAAAGGCTGAAGAAGCTCAAGGAAGTGATTGTTGTGAAGAATGGAG 352
||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 TTACTCCTCTATATAAAAGGCTGAAGAAGCTCAAGGAAGTGATTGTTGTGAAGAATGGAG 310
Query 353 ATAGCTCAGGATCTGAC-TCGAGTCCACAAGGTTATGACGAGGAGGATTCATCGAGGAAT 411
||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 311 ATAGCTCAGGATCTGACAT-GAGTCCACAAGGTTATGACGAGGAGGATTCATCGAGTAAT 369
Query 412 TCTACTGATATTGACAATCAAAG---TCTATATGTGGATGCAGAAGAAGAAGAAGAACTT 468
|| |||||||||||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 370 TCAACTGATATTGACAATCAAAGTCCTCTATATGTAGATGCAGAAGAAGAAGAAGAGCTT 429
Query 469 TGGAGGAAGATGGCTTTTGCTCAAGAATCAATTAAGGTAACGGTGGAGGATTCACAAAGT 528
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TGGAGGCAGATGGCTTTTGCTCAAGAATCAATTAAGGTAACGGTGGAGGATTCACAAAGT 489
Query 529 AATGATCACAAACAAATCGAAGACTGTGACCATTCCTTCATTTGCAAGGACGATATTGGA 588
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 490 AATGATCACAAACAAGTCGAAGACTGTGACCATTCCTTCATCTGCAAGGACGATATTGGA 549
Query 589 GAAGTGTGTCGTGTTTGTGGACTTATCAAGAAACCAATTGAGAGCATGATTGAGGTTGTG 648
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 550 GAAGTGTGTCGTGTTTGTGGACTCATCAAGAAACCAATTGAGAGCATGATTGAAGTTGTG 609
Query 649 TTCAACAAGCAAAAGAGATCGAGGAGAACTTATATGCGTGAAAAAGAAAATGGGGAAACG 708
|||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 610 TTCAACAAGCCAAAGAGATCAAGAAGAACTTATATGCGTGAAAAAGAAAATGGGGAAACG 669
Query 709 AGCAGGGATTTCTCAGGAATCCAGTCTTCTCATACAAACATTTTGGGAGAAAAAATGTTC 768
|| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 670 AGTAGGGCCTTCTCAGGAATCCAGTCTTCTCAGACAAACATTTTGGGAGAAAAAATGTTC 729
Query 769 ATTCACCCATGGCATGATCAGGAGATGAGGCCTCACCAGACTGAAGGATTTAGATTTTTA 828
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 730 ATTCACCCATGGCATGATCAGGAGATGAGGCCTCACCAGACTGAAGGATTCAGATTTTTA 789
Query 829 TGTAACAACCTTGCAGCAGATGAGCCAGGTGGATGCATATTAGCTCATGCTCCGGGATCA 888
|| |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 790 TGCAACAACCTTGCAGCGGATGAGCCAGGTGGATGCATATTAGCTCATGCACCAGGATCA 849
Query 889 GGCAAGACATTTCTGCTCATCAGCTTTCTGCAGAGTTTCATGGCTATGGATCCGCAGGCT 948
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 850 GGCAAGACATTTCTGCTCATCAGCTTTCTGCAGAGCTTCATGGCTATGGATCCGCAGGCT 909
Query 949 AGACCATTGGTTGTGCTACCAAAGGGGATCATAGAGTCATGGAAGAGAGAGTTTACTTTG 1008
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 910 AGACCATTGATTGTGCTACCGAAGGGGATCATAGAGTCATGGAAGAGAGAGTTTACTTTG 969
Query 1009 TGGGAAGTTGAGAAGATTCCCCTGCTTGATTTCTACAGCGTGAAAGCAGAATCACGGAAG 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 TGGGAAGTTGAGAAGATTCCCCTGCTTGATTTCTACAGCGTGAAAGCAGAATCACGGAAG 1029
Query 1069 CAGCAACTGAAGGTTTTGGGGCAATGGATCAAGGAGAGAAGCATTCTGTTTCTTGGTTAC 1128
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1030 CAGCAACTGAAGGTTTTGGGGCAATGGCTCAAGGAGAGAAGCATTCTGTTTCTTGGGTAC 1089
Query 1129 CAACAGTTTACGAGGATCATCTGCGATGATAAC--TTT-GAGGCAGCTTCAGAAGATTGT 1185
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1090 CAACAGTTTACGAGGATCATCTGCGATGATAAGAATTTTGAGGCAGCTTCAGAAGATTGT 1149
Query 1186 AAGCTGATATTGCTTGAGAAGCCAACGTTGCTTATACTTGATGAGGGTCATACCTCAAGG 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1150 AAGCTGATATTGCTTGAGAAGCCAACGTTGCTTATACTTGATGAGGGTCATACGTCAAGG 1209
Query 1246 AATAAGGAGACCTACATGCTTAGTTCGCTTGCTCGTGTCAAGACTCGTCGAAAGGTGGTT 1305
||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1210 AATAAGGAGACGAACATGCTTATTTCGCTTGCTCGTGTCAAGACTCCTCGAAAGGTGGTT 1269
Query 1306 CTCACAGGTACCTTGTTCCAAAACAACGTTGAAGAAGTGTTTAACATTTTGGATCTTGTT 1365
|||||||| ||||||||||||||||||||||| |||||||| ||||||||| ||||||||
Sbjct 1270 CTCACAGGGACCTTGTTCCAAAACAACGTTGAGGAAGTGTTCAACATTTTGAATCTTGTT 1329
Query 1366 CGTCCCAAGTTCTTGAAGCGCCCTGGAACTCGGGAGATTGTTTCTCGTATCATGAGCAAG 1425
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1330 CGGCCCAAGTTCTTGAAGCGTCCTGGAACTCGGGAGATTGTTTCTCGTATCATGAGCAAG 1389
Query 1426 GCAGAGATACCAAGAGGAAAACAGGTGAACCAGAGTAGTAGTAGTATCGAGGGGACTTTC 1485
||||||||||| ||||| ||||| |||||||||||||||| | |||||||||||||
Sbjct 1390 GCAGAGATACCGAGAGGCAAACATGTGAACCAGAGTAGTA-T-----CGAGGGGACTTTC 1443
Query 1486 TTTGCTGCAGTAGAGCTTACATTACAGAGGAGTACAAACTTTTCTGCCAAAGCCAGCTTG 1545
|| ||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 1444 TTCGCTGCAGTAGAGCTTACATTACAGAAGAGTATAGACTTTTCTGCCAAAGCCAGCTTG 1503
Query 1546 ATAAAGGATCTACGCGAAATGACCCGTAATATCTTGCATTATCACAAAGCAGATTTTAGC 1605
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 ATAAAGGATCTCCGCGAAATGACCCGTAATATCTTGCATTATCACAAAGCAGATTTTAGC 1563
Query 1606 GGCTTGCTTCCGGGGCTTAGTGAGTTCACTGTCATGCTCAACCTGAGCTCAATTCAGAGA 1665
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1564 GGCTTGCTTCCGGGGCTTAGTGAGTTCACTGTCATGCTAAATTTGAGCTCAATTCAGAGA 1623
Query 1666 GATGAAGTAAAAGGTCTGAGGAAAATGGAACTGTTCAAGCAGATCTCTCTTGGTGCTGCT 1725
|||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 GATGAAATCAAGGGTCTGAGGAAAATGGAACTGTTCAAGCAGATCTCTCTTGGTGCTGCT 1683
Query 1726 TTGTATATACACCCAAAGCTCAAATCTTTCTTGGAGGAAAACCCTTCCAACGGGGAAAAG 1785
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1684 TTGTATATACACCCAAAGCTCAAATCTTTCTTGGAGGAAAACCCTTCCAACGGGGAAAAA 1743
Query 1786 GGTTTTTCTGATAACAATACAACAGTTATGAAGCTGGACAAGATGCTGAAAAAGATCAAT 1845
|||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1744 GGTTTTGCTGATAACAACGCAACAGTTATGAAGCTGGACAAGATGCTGAAGAAGATCAAT 1803
Query 1846 GTGAGAGATGGGGTGAAGATGAAATTCTTCCTCAACCTCTTAGCTCTGTGTGAATCAACA 1905
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1804 GTCAGAGATGGTGTGAAGATGAAATTCTTCCTCAACCTCTTAGCTCTGTGTGAATCAACA 1863
Query 1906 GGAGAGAAGCTCTTGGTGTTTAGCCAATACATTGTTCCAATAAAGACTCTCGAGAGACTC 1965
||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1864 GGAGAGAAGCTTTTGGTGTTCAGCCAATACATTGTTCCAATAAAGACTCTTGAGAGACTG 1923
Query 1966 ATGAGCTCAATGAAAGGTTGGCGTTTAGGGAAAGAGATGTTCACAATCACAGGTGATTCA 2025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924 ATGAGCTCAATGAAAGGTTGGCGTTTAGGGAAAGAGATGTTCACAATCACAGGTGATTCA 1983
Query 2026 AGCAATGAACAGAGAGAATGGTCAATGGAGAGATTCAACAATTCACTAGAGGCTAAAGTG 2085
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1984 AGCAATGAACAGAGAGAATGGTCAATGGAGAGATTCAACAACTCACCAGAGGCTAAAGTG 2043
Query 2086 TTTTTCGGATCGATCAAAGCTTGTGGGGAAGGAATATCACTAGTGGGTGCATCACGGGTT 2145
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2044 TTTTTCGGATCGATCAAAGCTTGTGGGGAAGGAATATCACTAGTGGGTGCATCACGAGTT 2103
Query 2146 CTGATTCTTGATGTTCATCTGAACCCATCAGTGACTCAGCAAGCCGTGGCTCGAGCTTAT 2205
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2104 CTGATTCTTGATGTTCATCTGGACCCATCAGTGACTCAGCAAGCCGTGGCTCGAGCTTAT 2163
Query 2206 AGACCAGGACAGAAGAGGAAAGTATATGCGTACAAGCTCGTAGCTGCGGATTCACCAGAG 2265
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 2164 AGACCAGGACAGAAGAGGAAAGTGTATGCGTACAAGCTCGTAGCTGCGGGGTCACCAGAG 2223
Query 2266 GAAGAGAACTACGAAACATGTACGCGTAAAGAGATGATGTCGAAGATGTGGTTCGAGTGG 2325
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2224 GAAGAGAACTACGAAACGTGTACGCGTAAAGAGATGATGTCTAAGATGTGGTTCGAGTGG 2283
Query 2326 AATGTTGGATCAGGAAGAGAG-GATTTTGGGTTTAGAGCCATTGATGCTGATCACTCCGG 2384
|||||||| |||||||||| | ||||||||| | ||||||||||||| ||||||||||||
Sbjct 2284 AATGTTGGCTCAGGAAGAG-GTGATTTTGGGCTAAGAGCCATTGATGTTGATCACTCCGG 2342
Query 2385 TGATGCGTTTCTTGAAACGACCAAGATGAAGGAAGATATCAAGTGTTTATACACAAAGGT 2444
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2343 TGATGCGTTTCTTGAAACGACCAAGATGAAGGAAGATATCAAGTGTTTATACACAA-GGT 2401
Query 2445 AAA 2447
|||
Sbjct 2402 AAA 2404
Score = 315 bits (170), Expect = 1e-84
Identities = 202/218 (93%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 6 CACAGCTTGGAATTTAAGGTCACGTAGCAGGAGCATTACTCAAGAAGAACTTGCCAAGCG 65
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 CACAGCTTGGACTTTGAGGTCACGTAGCAGGAGCATTACTCAAGAAGAACTTGCCAAGCG 68
Query 66 TCCTGACCCATTCTGTCTACCGAATCTCCTTGATGGGCTTGAAGATGGTTTATACGGACG 125
||| ||||| ||| || |||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 69 TCCCGACCCGTTCAGTGTACCGAATCTTCTTGATGGGCTTGAAGATGGTGTATACGGATG 128
Query 126 TCTTGCTGATGATGTAAAGAGACTTTGTAAGCTGAGACAGGAATATTTGAATGGTTCCAT 185
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 129 TCTTGCTGATAATGTTAAGAGACTTTGTAAGCTGAGACAGGAATATTTGAATGGTTCTAT 188
Query 186 CTCATTGGAAGATATCGAAGCTAGACAAGACAACAAAC 223
|||| |||||||||||||||||||| |||| || ||||
Sbjct 189 CTCACTGGAAGATATCGAAGCTAGAGAAGAGAAAAAAC 226
> Ahg932077 jgi|Araly1|932077|scaffold_400065.1
Length=646
Score = 82.4 bits (44), Expect = 2e-14
Identities = 97/120 (81%), Gaps = 14/120 (12%)
Strand=Plus/Plus
Query 227 CCAAGTCTTCTCATAATCTTATCATCGATTCAGATGACGAGTTGCCTCAAGAATCAGTTA 286
|||||||| || ||| | ||||||||||||||||||| ||| |||||||||| |||| |
Sbjct 313 CCAAGTCTACTAATATTATTATCATCGATTCAGATGATGAGATGCCTCAAGACTCAG-T- 370
Query 287 CTCAAATTAATCCTCTAGA--A-AAAAGGCT-GAAGAAGCTCAAGGAAGTGATTGTTGTG 342
| | | ||||||||| | | || | | ||||||||||||||||||||||||||||
Sbjct 371 -T---A-T--TCCTCTAGATGATAGAA-GATCGAAGAAGCTCAAGGAAGTGATTGTTGTG 422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100443976065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5