BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21465.1
Length=243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319997 jgi|Araly1|319997|fgenesh1_pm.C_scaffold_4000054 261 2e-69
> Ahg319997 jgi|Araly1|319997|fgenesh1_pm.C_scaffold_4000054
Length=249
Score = 261 bits (141), Expect = 2e-69
Identities = 215/250 (86%), Gaps = 8/250 (3%)
Strand=Plus/Plus
Query 1 ATGGCCGCATCAAAAACTACAATCTTCATCGTTTTCGTTCTTTGTCTTTCATGCACGCTG 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1 ATGGCCGCATCAAAAACTACAATCTTCATCGTTTTTGTTCTTTGTCTTTCATGCACATTG 60
Query 61 TTGGTGAATATATCTGGAATTCAAGCCACT--A----GCTCGACATTAAAAGAGAGTCTA 114
||||||||||| |||||||||||||||||| | ||||||||| ||||||||| |||
Sbjct 61 TTGGTGAATATCTCTGGAATTCAAGCCACTGGACCAAGCTCGACATCAAAAGAGAGCCTA 120
Query 115 ACAGCTGAGATTAAGCCGACGAA-GGTGGATCGGTGCAAGACGGATCGTGATTGTCCCCA 173
||||| |||| | ||| ||| || || ||| || |||||||||||| ||||||||||||
Sbjct 121 ACAGCCGAGACTGAGCTGACCAATGG-GGAGCGATGCAAGACGGATAATGATTGTCCCCA 179
Query 174 ATCTCATCGATGCCAAAAAGACTTTTATTATGGTTGCGTTGTTGGAGAATGTATTTGTAG 233
||| |||| ||||| ||||| |||||||||| |||| || |||||||||||| |||||
Sbjct 180 ATCCCATCCATGCCCTAAAGAGTTTTATTATGCTTGCCTTCTTGGAGAATGTACTTGTAT 239
Query 234 AGCTGTTTGA 243
||| |||||
Sbjct 240 CGCTATTTGA 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8401417420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5