BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21470.2
Length=2575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481012 jgi|Araly1|481012|fgenesh2_kg.4__72__AT2G21470.2 1683 0.0
> Ahg481012 jgi|Araly1|481012|fgenesh2_kg.4__72__AT2G21470.2
Length=2387
Score = 1683 bits (911), Expect = 0.0
Identities = 982/1017 (97%), Gaps = 2/1017 (0%)
Strand=Plus/Plus
Query 881 TTCTAACATTGAAGCGGCTTTGTCCAATGAAGAGACATGGAAAAATCGCAGACGACCAAG 940
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 736 TTCTAACATTGAAGCGGCTTTGTCCAATGAAGAGACATGGAAAAATCGCAGGCGGCCAAG 795
Query 941 GCCTATATACAGTAAGGATGTCTTGCCTGAAAGTCTGACTCAACAAAATGGAAGCACTCA 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 GCCTATATACAGTAAGGATGTCTTGCCTGAAAGTCTGACTCAACAAAATGGAAGCACTCA 855
Query 1001 GAATTGTTCTGTTACTGATGGTGATTTAATGGTCTCTGCCATGCCATCGCTTGGCCTGAA 1060
||||||||||||||||||||| |||| ||||| |||| |||||| ||||||||||||||
Sbjct 856 GAATTGTTCTGTTACTGATGGCGATTCGATGGTTTCTGTCATGCCGTCGCTTGGCCTGAA 915
Query 1061 GAATCCACAGGAATTGTGGGGTCTAACGCAGAATTCTCTTGTGTTCATAGAAGCATTGAA 1120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 916 GAATCCACAGGAATTGTGGGGTCTAACGCAGAATTCTCTAGTGTTCATAGAAGCATTGAA 975
Query 1121 GTTGTTCTTCGCCAAGAGAAAGAAGGAAATAGGACACCTTACTTTTGACAAAGATGATCA 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 GTTGTTCTTCGCCAAGAGAAAGAAGGAAATAGGACACCTTACTTTTGACAAAGATGATCA 1035
Query 1181 GTTAGCTGTAGAATTTGTTACTGCTGCTGCAAATATCCGTGCTGAGTCTTTCGGAATTCC 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 GTTAGCTGTAGAATTTGTTACTGCTGCTGCAAATATCCGTGCTGAGTCTTTCGGAATTCC 1095
Query 1241 TTTGCACAGCCTTTTTGAAGCGAAAGGTATTGCTGGAAACATTGTTCATGCTGTTGCTAC 1300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 TTTGCACAGCCTCTTTGAAGCGAAAGGTATTGCTGGAAACATTGTTCATGCTGTTGCTAC 1155
Query 1301 GACCAACGCCATTATTGCTGGTTTAATTGTCATTGAAGCAATCAAAGTGCTGAAAAAGGA 1360
|||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1156 GACCAACGCCATTATTGCCGGTTTGATTGTTATTGAAGCAATCAAAGTGCTGAAAAAGGA 1215
Query 1361 TGTGGACAAGTTCAGAATGACATATTGCTTAGAACACCCAAGCAAAAAGCTGCTGCTTAT 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 TGTGGACAAGTTCAGAATGACATATTGCTTAGAACACCCAAGCAAAAAGCTGCTGCTTAT 1275
Query 1421 GCCAATCGAGCCATATGAACCTAATCCTGCTTGCTATGTCTGTTCCGAGACCCCATTAGT 1480
||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||
Sbjct 1276 GCCAATCGAGCCATATGAACCTAATCCCGCTTGCTATGTCTGTTCTAAGACCCCTTTAGT 1335
Query 1481 ACTCGAGATCAATACTCGGAAATCAAAACTACGGGATCTAGTTGATAAAATTGTGAAAAC 1540
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 1336 ACTTGAGATCAATACTCGGAAATCGAAACTACGGGATCTAGTTGATAAAATTGTCAAAGC 1395
Query 1541 CAAGCTTGGAATGAACCTACCGTTGATTATGCACGGGAATTCGCTTCTGTATGAAGTTGG 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 CAAGCTTGGAATGAACCTACCGTTGATTATGCACGGGAATTCGCTTCTGTATGAAGTTGG 1455
Query 1601 CGATGATCTTGATGATATTATGGTTGCAAACTACAACGCTAATCTTGAGAAGTATCTATC 1660
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1456 CGATGATCTTGATGATATTATGGTTGCAAACTACAACGCTAATCTCGAGAAGTATTTATC 1515
Query 1661 AGAACTTCCTTCTCCCATTCTTAACGGAAGCATTCTCACAGTCGAAGATCTTCAACAAGA 1720
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1516 AGAACTTCCTTCTCCCATTCTCAACGGAAGCATTCTCACAGTCGAAGATCTTCAACAAGA 1575
Query 1721 GCTATCTTGCAAGATAAATGTCAAGCACAGGtttttttCTGAAATTTTGAATCCTGTTTT 1780
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1576 GCTATCTTGCAAGATAAATGTCAAGCACAGGTTTTATTCTGAAATTTTGAATCCTGTTTC 1635
Query 1781 AAATTCAGTTTGGTTTCTGATTATATTACCATCGACTTTCCCTAAACTCTTCCATTTCAC 1840
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1636 AAATTCAGTTTGGTTTCTGATAATATTACCATCGACTTTCCCTAAACTTTTCCATTTCA- 1694
Query 1841 TGAA-TCACGAAATCAAGATGGGTTATCATTAGACATCATCCTAGGATTCTCAAATG 1896
| || |||||||| ||||||| |||||||| |||||| |||||||||||||||||||
Sbjct 1695 TCAAATCACGAAACCAAGATGAGTTATCATCAGACATTATCCTAGGATTCTCAAATG 1751
Score = 1264 bits (684), Expect = 0.0
Identities = 719/736 (98%), Gaps = 1/736 (0%)
Strand=Plus/Plus
Query 112 CTGAATCGTCGTTTAACGTATTGCTCCGTCTTTTCACTTTCTCCGCCATGGCTACGCAAC 171
||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1 CTGAACCGTCGCTTAACCTATTGCTCCGTCTTTTCAC-TTCTCCGCCATGGCTACCCAAC 59
Query 172 AACAGCAATCCGCCATTAAAGGCGCGAAAGTGCTTATGGTTGGAGCTGGTGGGATTGGTT 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AACAGCAATCCGCCATTAAAGGCGCGAAAGTGCTTATGGTTGGAGCTGGTGGGATTGGTT 119
Query 232 GCGAGTTACTTAAGACTCTTGCTCTTTCTGGATTCGAGGACATTCATATTATTGACATGG 291
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 GCGAGTTACTGAAGACTCTTGCTCTTTCTGGATTCGAAGACATTCATATTATTGACATGG 179
Query 292 ACACTATTGAAGTCAGTAACCTGAATAGGCAATTTCTATTCCGTCGTTCTCATGTTGGGC 351
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 ACACTATTGAAGTCAGTAACCTGAATAGGCAATTTCTATTCCGTCGTTGTCATGTTGGGC 239
Query 352 AGTCTAAGGCTAAGGTTGCCAGAGATGCAGTCTTGAGATTTAGGCCTAACATTAATATAA 411
|||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 240 AGTCCAAGGCTAAGGTTGCCAGAGATGCAGTATTGAGATTTAGGCCTCACATTAATATAA 299
Query 412 GATCATACCATGCAAATGTGAAGAATCCCGAGTTTGATGTTGATTTTTTCAAGCAATTTG 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GATCATACCATGCAAATGTGAAGAATCCCGAGTTTGATGTTGATTTTTTCAAGCAATTTG 359
Query 472 ATGTTGTTCTGAATGGGCTGGACAACTTGGACGCAAGGCGTCATGTGAATCGCCTTTGTC 531
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 360 ATGTTGTTCTGAATGGGCTGGACAACTTGGATGCAAGGCGTCATGTGAATCGCCTTTGTC 419
Query 532 TTGCAGCTGATGTTCCTCTTGTAGAAAGTGGGACAACGGGCTTCCTTGGACAGGTAACTG 591
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 420 TTGCAGCTGATGTTCCTCTTGTAGAAAGTGGGACAACGGGCTTCCTAGGACAGGTAACTG 479
Query 592 TGCATATAAAGGGAAAAACAGAATGTTATGAGTGCCAAACCAAACCTGCTCCAAAGACTT 651
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 TGCATATAAAGGGGAAAACAGAATGTTATGAGTGCCAAACCAAACCTGCTCCAAAGACCT 539
Query 652 ATCCTGTGTGTACAATAACCAGCACGCCAACTAAGTTTGTGCACTGTATTGTATGGGCAA 711
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 540 ATCCTGTGTGTACAATAACCAGCACTCCAACTAAGTTTGTGCACTGTATTGTATGGGCAA 599
Query 712 AAGACCTGCTCTTTGCAAAGTTGTTTGGCGACAAGAATCAAGATAATGATCTTAATGTGC 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAGACCTGCTCTTTGCAAAGTTGTTTGGCGACAAGAATCAAGATAATGATCTTAATGTGC 659
Query 772 GATCCAACAATTCTGCAAGCTCATCCAAAGAAACAGAAGATGTATTTGAACGTTCAGAAG 831
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GATCCAACAACTCTGCAAGCTCATCCAAAGAAACAGAAGATGTATTTGAACGTTCAGAAG 719
Query 832 ATGAAGATATTGAGCA 847
||||||||||||||||
Sbjct 720 ATGAAGATATTGAGCA 735
Score = 944 bits (511), Expect = 0.0
Identities = 601/641 (94%), Gaps = 20/641 (3%)
Strand=Plus/Plus
Query 1940 TTTAACGCATCCTTTACTTATTCTG-TTCTGTCACAGGGAAGAATTTGACGAGGAAAAAG 1998
||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1762 TTTAA-GCATCCTCTACTTATTCTGTTTCTGTCACAGGGAAGAATTTGACGAGGAAAAAG 1820
Query 1999 AACCTGAAGGAATGGTACTCTCTGGATGGACACCA-TCTCCAGCTACCAATGGCGAGAGC 2057
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1821 AACCTGAAGGAATGGTACTCTCTGGATGGACA-CAGTCTCCAGCTACCAATGGCGAGAGC 1879
Query 2058 GCATCAACATCAAACAACGAGAA-CCCAGTTGATGTTACAGAGAGTTCCTCAGGATCCGA 2116
||||||||||||||||| ||||| |||| | ||||| |||||||||||||||||||||||
Sbjct 1880 GCATCAACATCAAACAATGAGAACCCCA-TCGATGTCACAGAGAGTTCCTCAGGATCCGA 1938
Query 2117 GCCTGCTTCTAAGAAGAGAAGACTCTCTGAGACCGAGGCCAGTAATCATAAGAAAGAAAC 2176
| |||||||||||||||||| |||||| ||| ||||| |||||||||||||||||||| |
Sbjct 1939 GACTGCTTCTAAGAAGAGAAAACTCTCCGAGCCCGAGCCCAGTAATCATAAGAAAGAAGC 1998
Query 2177 AGAGAACGTCGAGAGTGAAGATGATGATATCATGGAGGTTGAAAATCCCATGATGGTGAG 2236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 AGAGAACGTCGAGAGTGAAGATGATGATATCATGGAGGTTGAAAATCCCATGATGGTGAG 2058
Query 2237 CAAAAAGAAGATAAGAGTTGAATAGGCCCCTTTTTTGAAAGATCTGATCCCTAAATGCTT 2296
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 2059 CAAAAAGAAGATAAGAGTTGAATAGGCC--TTTTT-GAAAGATCTGATCCCTAAATCCTT 2115
Query 2297 GCTTTATTTATTAGCTTCT-TTTTACTTCGATCTAACTTTCTACTTTCTGAAATTATGCC 2355
||||| ||| | ||||||| ||||| |||||||||||||||||||||||||| ||| |||
Sbjct 2116 GCTTT-TTT-T-AGCTTCTCTTTTATTTCGATCTAACTTTCTACTTTCTGAATTTACGCC 2172
Query 2356 ACAAGAATTACAAAGTATGATTTAGGGATTCTTTGATGAAGAAGAAAACTACTCAGATTG 2415
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2173 ACAAGAATTACAA-GTATGATTTAGGGATTCTTTGATGAAGAAGAAA-CTACTCAGATTG 2230
Query 2416 TTAAATATTTACTAGGACAGGATCCTTTGGATGAGGAGCTCAGGAACTCATTTTAAGG-A 2474
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 2231 TTAAATATTTACTAGGACAGGATCCTTTGGATGAGGAGCTCAGGAACTCATTCTAAGGGA 2290
Query 2475 AGCAATTTTTGCTTTCCAGAGATTCCTGTTATGTTTTCACTAACTGTAAGAGCTCCCTTG 2534
|||||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||
Sbjct 2291 AGCAATCTTTGCTTTCCAGAGATTC-TGTAATGTTCTCACTAACTGTAAGAGCTCCCTTG 2349
Query 2535 TATCTTTATTTCTTCGAGTTATCAAATTTTCTGtttttttt 2575
||||||||||||| ||||||||||||||||| ||||||
Sbjct 2350 TATCTTTATTTCT---AGTTATCAAATTTTCTGGGTTTTTT 2387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97092034505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5