BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21480.1
Length=2616
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481013 jgi|Araly1|481013|fgenesh2_kg.4__73__AT2G21480.1 3626 0.0
Ahg943881 jgi|Araly1|943881|scaffold_700110.1 2266 0.0
> Ahg481013 jgi|Araly1|481013|fgenesh2_kg.4__73__AT2G21480.1
Length=2514
Score = 3626 bits (1963), Expect = 0.0
Identities = 2171/2273 (96%), Gaps = 7/2273 (0%)
Strand=Plus/Plus
Query 347 CCATTTACAAGTTCCATTTGACCCGTCCTGGTTGGCATTGGGTTCGTCTCCATTTCTTTG 406
|||||||||||| ||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 246 CCATTTACAAGTGCCA-TTAACCCGTCCCGGTTGGCATTGGGTTCGTCTCCATTTCTTTG 304
Query 407 CCTTTCCC-AATGACAAGTTTGATCTCCAACAAGCAACTTTCTCTGTTTTAACAGAGAAG 465
|| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 305 CC-TTCCCAAATGACAAGTTTGATCTCCAGCAAGCAACTTTCTCTGTTTTAACAGAGAAG 363
Query 466 TATGTCTTGCTTCATAACTTTAAACTAAGTAACGACAACAATGATAGCCAAGCTACTGTT 525
|| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 364 TACGTCTTGCTTCATAACTTTAAACTGAGTAACAACAACAATGATAGCCAAGCTACTGTT 423
Query 526 CAGAAAGAGTACCTCCTCAACATGACCGATGCACAATTCGCCCTAAGGTTCAAGCCTATG 585
||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 424 CAGAAAGAGTACCTCGTCAACATGACCGATGCACAATTCGCCCTTAGGTTCAAACCTATG 483
Query 586 AAAGGCTCTGCGGCTTTCATCAACGGTATAGAACTTGTGTCAGCTCCAGACGAACTTATC 645
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 484 AAAGGTTCTGCCGCTTTCATCAACGGTATCGAACTTGTGTCAGCTCCAGACGAACTTATC 543
Query 646 TCTGATGCAGGCACTTCTCTTTTCCCTGTCAACGGTTTTTCGGGTTTGTCTGATTACGCA 705
||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||
Sbjct 544 TCTGATGCAGGCACTTCTCTTTTCCCTGTCAACGGGTTCTCGGGTCTGTCTGATTACGCA 603
Query 706 TACCAGTCCGTTTACAGGGTTAATGTTGGTGGCCCCTTGATCACGCCACAGAATGACACA 765
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 604 TACCAGTCGGTTTACAGGGTTAATGTTGGTGGCCCCTTGATCACGCCTCAGAATGACACA 663
Query 766 CTAGGAAGAACTTGGACACCTGACAAAGAATACTTAAAAGATGAGAATCTAGCTAAGGAT 825
|||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 664 TTAGGAAGAACCTGGACACCTGACAAAGAATACTTGAAAGATGAGAATCTGGCTAAGGAT 723
Query 826 GTTAAAACAAACCCTACAGCGATCATCTATCCTCCTGGAGTTACACCGCTGATAGCGCCA 885
|| |||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct 724 GTCAAAACAAACCCTACAGCGATCATCTATCCTCCTGGACTTACACCTCTGATTGCGCCA 783
Query 886 CAAACGGTTTACGCAACAGGAGCAGAGATGGCTGATTCTCAAACCATAGATCCTAACTTC 945
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 784 CAGACGGTTTACGCAACAGGCGCAGAGATGGCTGATTCTCAAACCATAGATCCTAACTTC 843
Query 946 AATGTTACATGGAATTTCCCATCAAACCCATCATTTCACTACTTCATTCGTCTTCATTTC 1005
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AATGTCACATGGAACTTCCCATCAAACCCATCATTTCACTACTTCATTCGTCTTCATTTC 903
Query 1006 TGTGACATCATCAGCAAGTCTCTTAATGACCTCTACTTCAACGTTTACATCAATGGAAAG 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TGTGACATCATCAGCAAGTCTCTTAATGACCTCTACTTCAACGTTTACATCAATGGAAAG 963
Query 1066 ACCGCTATTTCCGGGCTAGATTTGTCCACTGTAGCTGGAGATCTTTCTGCTCCTTACTAC 1125
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 964 ACCGCCATTTCCGGGCTAGATTTGTCCACTGTAGCTGGCGATCTTTCTGCTCCTTACTAC 1023
Query 1126 AAAGACATTGTGGTGAACTCGACACTTATGACATCTGAGCTTCAGGTCCAGATTGGTCCT 1185
||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||
Sbjct 1024 AAAGACATTGTGGTGAACTCGACTCTTATGAAATCTGAGCTTCAGGTGCAGATTGGTCCC 1083
Query 1186 ATGGGAGAAGACACTGGGAAAAAGAACGCGATCTTGAACGGTGTCGAGGTCTTGAAGATG 1245
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1084 ATGGGAGAAGACACTGGGAAAAAGAACGCGATCTTGAACGGAGTCGAGGTCCTGAAGATG 1143
Query 1246 AGCAACTCTGTGAACAGTCTTGATGGAGAATTTGGAGTGGATGGTCAAAGAGCGAGTATG 1305
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1144 AGCAACTCTGTGAACAGTCTTGATGGAGAATTTGGAGTTGATGGTAAAAGAGCGAGTATG 1203
Query 1306 GGGAAGCAGGGGATGGTTGCAACCGCGGGTTTTGTGATGATGTTTGGAGCCTTCGTAGGT 1365
||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 1204 GGGAAGCAGGGGATGGTTGCAACTGCGGGTTTTGTGATGATGTTTGGCGCTTTCGTAGGT 1263
Query 1366 CTTGGAGCAATGGTTTACAAGTGGAAGAAGAGACCACAAGATTGGCAGAAGAGAAACAGT 1425
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1264 CTTGGAGCAATGGTTTACAAATGGAAGAAGAGACCCCAAGATTGGCAGAAGAGAAACAGT 1323
Query 1426 TTCTCTTCTTGGTTACTTCCAATACACGCTGGTGACAGTACCTTCATGACAAGCAAAACA 1485
||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||
Sbjct 1324 TTCTCTTCTTGGTTACTACCAATACATGCCGGTGACAGTACTTTCATGACAAGCAAAACA 1383
Query 1486 GGTTCTCACAAATCCAACTTGTACAATTCCGCGCTTGGCCTCGGACGCTATTTCTCCCTC 1545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 GGTTCTCACAAATCCAACTTGTACAATTCCGCGCTTGGCCTCGGACGCTATTTCTCCCTC 1443
Query 1546 TCTGAGCTTCAAGAAGTCACAAAGAACTTCGATGCATCAGAGATCATCGGTGTTGGTGGA 1605
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 TCAGAGCTTCAAGAAGTCACAAAGAACTTCGATGCATCAGAGATCATCGGTGTTGGTGGA 1503
Query 1606 TTTGGTAACGTTTACATTGGTACCATTGACGATGGAACTCAAGTTGCTATCAAACGAGGC 1665
||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1504 TTTGGAAACGTTTACATTGGTACCATTGACGACGGAACTCAAGTTGCCATCAAACGAGGC 1563
Query 1666 AATCCACAGTCAGAGCAAGGGATCACAGAGTTTCATACAGAGATTCAGATGCTATCTAAG 1725
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||
Sbjct 1564 AATCCACAGTCAGAGCAAGGGATCACAGAGTTTCAGACAGAGATTCAAATGCTGTCCAAA 1623
Query 1726 CTTAGACACAGACACTTAGTCTCATTGATTGGATACTGCGATGAGAACGCAGAGATGATC 1785
|| ||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1624 CTCAGACATAGACACTTAGTCTCCTTGATTGGATACTGCGATGAGAACTCAGAGATGATC 1683
Query 1786 CTTGTATACGAATACATGTCCAATGGTCCTTTTAGAGATCATCTTTATGGGAAGAATCTT 1845
||||| |||||||||||||||||||||||||||||||| |||||||| ||||| || |||
Sbjct 1684 CTTGTCTACGAATACATGTCCAATGGTCCTTTTAGAGACCATCTTTACGGGAAAAACCTT 1743
Query 1846 TCTCCTTTGACTTGGAAACAAAGACTGGAGATCTGCATTGGAGCTGCTCGTGGACTTCAC 1905
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 1744 TCTCCTTTGACTTGGAAACAAAGACTTGAGATCTGCATTGGAGCTGCTCGTGGGCTACAC 1803
Query 1906 TATTTACACACAGGAACAGCTCAAGGCATTATCCATCGTGACGTCAAATCCACAAATATT 1965
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1804 TATTTACACACAGGAACAGCTCAAGGCATTATCCATCGTGACGTCAAATCCACAAACATT 1863
Query 1966 CTTCTTGATGAAGCTTTAGTTGCAAAAGTTGCTGACTTTGGTCTCTCCAAAGACGTTGCC 2025
||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 1864 CTTCTTGATGAAGCTTTAGTTGCTAAAGTAGCTGACTTTGGTCTCTCTAAAGACGTTGCG 1923
Query 2026 TTTGGACAAAACCATGTTAGTACGGCTGTGAAAGGTAGTTTTGGGTATTTAGACCCGGAA 2085
||||||||||||||||| ||||| || |||||||||||||| |||||||||||||| |||
Sbjct 1924 TTTGGACAAAACCATGTCAGTACAGCCGTGAAAGGTAGTTTCGGGTATTTAGACCCAGAA 1983
Query 2086 TACTTCAGGAGACAGCAACTTACAGACAAATCCGATGTTTATTCCTTTGGTGTTGTTCTA 2145
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1984 TACTTCAGGAGACAACAACTTACAGACAAATCCGATGTTTATTCCTTTGGTGTTGTTCTA 2043
Query 2146 CTAGAAGCTCTATGTGCAAGACCAGCCATTAATCCTCAGCTTCCAAGGGAACAAGTTAAC 2205
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 2044 CTAGAAGCTCTATGTGCAAGACCAGCCATTAACCCTCAGCTTCCAAGGGAACAGGTTAAC 2103
Query 2206 TTAGCCGAATGGGCTATGCTATGGAAACAAAAAGGTTTACTCGAAAAGATCATCGACCCT 2265
||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 2104 TTAGCTGAATGGGCTATGTTATGGAAACAAAAAGGGTTACTCGAAAAGATCATCGACCCT 2163
Query 2266 CATCTCGTTGGTGCTGTGAATCCTGAATCAATGAAAAAGTTTGCAGAAGCTGCAGAGAAG 2325
||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2164 CATCTAGTTGGCACTGTGAATCCTGAATCTATGAAAAAGTTTGCAGAAGCTGCAGAGAAG 2223
Query 2326 TGTTTAGCAGATTATGGTGTTGATAGACCAACAATGGGAGATGTATTGTGGAACTTAGAA 2385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2224 TGTTTAGCAGATTATGGTGTTGATAGACCAACAATGGGAGATGTATTGTGGAACTTAGAA 2283
Query 2386 TATGCTCTTCAGCTTCAAGAGGCTTTTTCTCAGGGTAAAGCTGAGGCTGAGGAGGTTGAG 2445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2284 TATGCTCTTCAGCTTCAAGAGGCTTTTTCTCAGGGTAAAGCTGAGGCTGAGGAGGTTGAG 2343
Query 2446 ACTCCC-AAGCCTGTGGCTG-TCCCTGCTGCTGCGCCGACTTCACCTGCTGCCACCACTG 2503
|| ||| ||||||||||||| ||| |||||||||||||||||||||||||||||| ||||
Sbjct 2344 AC-CCCTAAGCCTGTGGCTGCTCC-TGCTGCTGCGCCGACTTCACCTGCTGCCACTACTG 2401
Query 2504 CTGCAGCAAGTGAACGTCCAGTTTCTCAGACTGAAGAGAAGGATGACTCAACGGTGGACC 2563
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 2402 CTGCAGCAAGTGAACGTCCGGTTTCTCAGACTGAAGAGAAGGATGACTCGACGGTGGACC 2461
Query 2564 AACACTCTGGAACCACCATGTTTACTCAGTTTGCTAGCCTTAACGGAAGATAA 2616
|||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2462 AACACTCTGGAACCACCATGTTTACTCAGTTTGCTAGCCTCAATGGAAGATAA 2514
Score = 372 bits (201), Expect = 8e-102
Identities = 233/248 (94%), Gaps = 3/248 (1%)
Strand=Plus/Plus
Query 1 ATGGAGATAAGAAAGAAACCAAACATACCCATGTGTCTTGTCTTAGATTCTTCTTCCAGG 60
|||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1 ATGGAGATAAGAAATAAACCAAACATACCTATGTGTCTTGTCTTAAATTCTTCTTCCAGG 60
Query 61 CCCTTCATGACTCTCCTCTTCACCATCCTCCTCTTCTTAACCGGCCTAGCTTCAGCGGTT 120
||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 61 CCCTTCATGCCTCTCCTCTTCACCATCCTCCTCTTCTTAACCGGCCTAGCGTCAGTGGTT 120
Query 121 GGCGCCGTCGGTGGTAGCCCAACTGCTGGTTTCAAACCGGCTGATGACATTCTCATTGAT 180
||| |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 121 ---GCCATCGGTGGTGGCCCAACCGCTGGCTTCAAACCGGCTGATGACATTCTCATTGAT 177
Query 181 TGTGGTAGCAAGTCATCAACCAAAACCCCTGAAGGTAGAGTCTTTAAGAGTGACTCAGAA 240
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TGTGGAAGCAAGTCATTAACCAAAACCCCTGAAGGTAGAGTCTTTAAGAGTGACTCAGAA 237
Query 241 ACGGTTCA 248
||||||||
Sbjct 238 ACGGTTCA 245
> Ahg943881 jgi|Araly1|943881|scaffold_700110.1
Length=2696
Score = 2266 bits (1227), Expect = 0.0
Identities = 2061/2461 (84%), Gaps = 67/2461 (3%)
Strand=Plus/Plus
Query 1 ATGGAGATAAGAAAGAAACCAAACATACCCA-TGTGTCTTGTC-TTAGATTCTTCTTCCA 58
||||||||||||||||||||||||||| || || ||| ||| || ||| |||||| |
Sbjct 28 ATGGAGATAAGAAAGAAACCAAACATATTCACGGT-TCTCGTCATT-TATTTTTCTTCAA 85
Query 59 GGCCCTT-CATGACTCTCC-TCTTCACCATCCTCCTCTTCTTAACCGG-CC-T-AGCTTC 113
| |||| |||| |||||| || | | || ||||||||| | | || || | || ||
Sbjct 86 TG-CCTTCCATGGCTCTCCTTC-TGGCTATTCTCCTCTTCCTCTCAGGCCCTTCTGCATC 143
Query 114 AGCGGTTGGC-GCCG-T-CGGTGGTAGCCCAACTGCTGGTTTCAAACCGGCTGATGACAT 170
|||| | || |||| | | |||| | || || ||||||| |||||||| ||||| ||
Sbjct 144 TGCGG-TAGCTGCCGCTGCTGTGG--GACCTGCTACTGGTTTTAAACCGGCAGATGATAT 200
Query 171 TCTCATTGATTGTGGTAGCAAGTCATCAACCAAAACCCCTGAAGGTAGAGTCTTTAAGAG 230
||||||||||||||| ||||| || ||| | ||||||||||| || ||||||||||||||
Sbjct 201 TCTCATTGATTGTGGAAGCAAATCGTCATCAAAAACCCCTGATGGAAGAGTCTTTAAGAG 260
Query 231 TGACTC-AGAAACGGTTCAGTACATAGAAGCCAAAGACGATATTCAGGTCTCTGCTCCAC 289
|||| | |||||| | || |||||||||||||| || || ||||||||||| || || |
Sbjct 261 TGAC-CAAGAAACAATCCAATACATAGAAGCCAAGGAAGACATTCAGGTCTCGGCCCCGC 319
Query 290 CTTCAGATAAACTCCCTTCTCCTATTTACCTTACCGCGAA-AATCTTCCGCGAAGAAGCC 348
||||||| || || |||||||||| ||||| || || || |||||||| || ||||||
Sbjct 320 CTTCAGACAAGGTCGCTTCTCCTATCTACCTAACTGC-AAGGATCTTCCGTGAGGAAGCC 378
Query 349 ATTTACAAGTTCCATTTGACCCGTCCTGGTTGGCATTGGGTTCGTCTCCATTTCTTTGCC 408
| ||||| ||||||||||| || |||||||||||||||||||| || |||||||| |||
Sbjct 379 ACCTACAAATTCCATTTGACTCGACCTGGTTGGCATTGGGTTCGCCTTCATTTCTTGGCC 438
Query 409 TTTCCC-AATGACAAGTTTGATCTCCAACAAGCAA-CTTTCTCTGTTTTAACAGAGAAGT 466
||||| ||||||||||| ||||| |||||||||| |||| || |||||||| ||||| |
Sbjct 439 -TTCCCTAATGACAAGTTCGATCTTCAACAAGCAACCTTT-TCCGTTTTAACGGAGAAAT 496
Query 467 ATGT-CTTGCTTCATAACTTTAAACTAAGTAACGACAACAATGATAGCCAAGCTACTGTT 525
|||| | ||||||||||||| ||| |||||||| | ||||||||||| |||||| ||||
Sbjct 497 ATGTGC-TGCTTCATAACTTCAAAATAAGTAACAATAACAATGATAGTCAAGCTGTTGTT 555
Query 526 CAGAAAGAGTACCTCCTCAACATGACCGATGCACAATTCGCCCTAAGGTTCAAG-CCTAT 584
||||| ||||| ||| |||||||||| ||||| ||||||||||| |||||| || |||||
Sbjct 556 CAGAAGGAGTATCTCGTCAACATGACAGATGCTCAATTCGCCCTCAGGTTC-AGACCTAT 614
Query 585 GAAAGGCTCTGCGGCTTTCATCAACGGTATAGAACTTGTGTCAGCTCCAGACGAACTTAT 644
|||| ||||||| || |||||||||| ||| ||| | |||||||||||||||||||| ||
Sbjct 615 GAAAAGCTCTGCAGCGTTCATCAACGCTATCGAAGTCGTGTCAGCTCCAGACGAACTGAT 674
Query 645 CTCTGATGCAGGCACTTCTCTTTTCCCTGTCAACGGTTTTTCGGGTTTGTCTGATTACGC 704
||||||| | |||||| | |||||||||||||| || || |||||| |||||||||||||
Sbjct 675 CTCTGATTCTGGCACTGCCCTTTTCCCTGTCAATGGGTTCTCGGGTCTGTCTGATTACGC 734
Query 705 ATACCAGTCCGTTTACAGGGTTAATGTTGGTGGCCCCTTGATCACGCCACAGAATGACAC 764
|||||||| ||||| || || ||||| ||||| |||||||||| ||| |||||||| ||
Sbjct 735 TTACCAGTCTGTTTATAGAGTCAATGTCGGTGGTCCCTTGATCATGCCTCAGAATGATAC 794
Query 765 ACTAGGAAGAACTTGGACACCTGACAAAGAATACTTAAAAGATGAGAATC-TAGCTAAGG 823
| |||||||||| |||| ||| || || |||| ||| ||||||||||| | | || ||||
Sbjct 795 ATTAGGAAGAACCTGGATACCGGATAAGGAATTCTTGAAAGATGAGAA-CTTGGCAAAGG 853
Query 824 ATGTTAAAACAAACCCTACAGCGATCATCTATCCTCCTGG-AGTTACACCGCTGATAGCG 882
| || ||||||| |||| |||| |||| || || || || ||||||||| |||| ||
Sbjct 854 ACGTCAAAACAACCCCTTCAGCAATCAAGTACCCACC-GGAAGTTACACCTTTGATTGCT 912
Query 883 CCACAAACGGTTTACGCAACAGGAGCAGAGATGGCTGATTCTCAAACCATAGATCCTAAC 942
||||| ||||| || ||||||| | || |||||| |||||| |||||||| |||||
Sbjct 913 CCACAGACGGTCTATGCAACAGCTGTGGAAATGGCTAATTCTCTCACCATAGACCCTAAT 972
Query 943 TTCAATGT-TACATGGAATTTCCCATCAAACCCATCATTTCACTA-CTTCATTCGTCTTC 1000
|| || || | | ||||||||||| || |||||||| ||| |||| ||| || || ||||
Sbjct 973 TTTAACGTCT-CCTGGAATTTCCCCTCCAACCCATCGTTTAACTACCTT-ATCCGGCTTC 1030
Query 1001 ATTTCTGTGACATCATCAGCAAGTCTCTTAATGACCTCTACTTCAACGTTTACATCAA-T 1059
|||||||||| ||| | ||||||||||| |||||||||||||| || || ||||| ||
Sbjct 1031 ATTTCTGTGATATCGTTAGCAAGTCTCTCAATGACCTCTACTTTAATGTGTACATTAACG 1090
Query 1060 GGAAAGACCGCTATTTCCGGGCTAGATTTGTCCACTGTAGCT-GGAGATCTTTCTGCTCC 1118
||||| || || ||||| ||||| |||||||||||||| ||| ||| |||| | |||||
Sbjct 1091 GGAAA-ACTGCCATTTCTGGGCTGGATTTGTCCACTGTCGCTGGGA-ATCTAGCAGCTCC 1148
Query 1119 TTACTACAAAGACATTGTGGTGAACTCGACACTTAT-GACATCTGAGCTTCAGGTCCAGA 1177
|||||||||||||||||| |||||| | |||||||| | | ||||||| || |||||||
Sbjct 1149 TTACTACAAAGACATTGTTGTGAACGCAACACTTATGGGC-CCTGAGCTCCAAGTCCAGA 1207
Query 1178 TTGGTCCTATGGGAGAAGACACTGGGA-AAAAGAACGCGATCTTGAACGGTGTCGAGG-T 1235
||||||| ||||||||||| || |||| ||| |||||||||||||||||||| |||| |
Sbjct 1208 TTGGTCCCATGGGAGAAGATACAGGGACCAAA-AACGCGATCTTGAACGGTGTTGAGGTT 1266
Query 1236 CTTGAAGATGAGCAACTCTGTGAACAGTCTTGATGGAGAATTTGGAGTGGATGGTCA-AA 1294
| ||||||||||||| || |||||||| ||||||||||| |||||||| |||||| | ||
Sbjct 1267 C-TGAAGATGAGCAATTCCGTGAACAGCCTTGATGGAGAGTTTGGAGTTGATGGT-AGAA 1324
Query 1295 -GAGC-GAGTATGGGGAAGCAGGGGATGGTTGCAACCGC-GGGTTTTGTGATGATGTTTG 1351
| | | | ||||||||||| || |||||||||||||| ||| ||||||||||||||||
Sbjct 1325 CCA-CTG-GCATGGGGAAGCATGGTATGGTTGCAACCGCAGGG-TTTGTGATGATGTTTG 1381
Query 1352 GAGCCTTCGTAGGTCTTGGAGCAATGGTTTACAAGTGGAAGAAGAGACCACAAGATTGGC 1411
|||| ||| | ||||| ||||| |||||||||| |||||||||||| |||||||||||||
Sbjct 1382 GAGCTTTCATTGGTCTGGGAGCCATGGTTTACAGGTGGAAGAAGAGGCCACAAGATTGGC 1441
Query 1412 AGAAGAGAAACAGTTTCTCTTCTTGGTTACTTCCAATACACGCTGGTGACAGTACCTTCA 1471
||||||||||||||||||| |||||||| || |||||||| |||||||| || || ||||
Sbjct 1442 AGAAGAGAAACAGTTTCTCCTCTTGGTTGCTACCAATACATGCTGGTGATAGCACTTTCA 1501
Query 1472 TGACAAGCAAAACAGGTTCTCACAAATCCAACTTGTACAATTCCGCGCTTGGCCTCGGAC 1531
||||||||||| |||||||| ||||||||||| ||||| || | ||||| ||||| |
Sbjct 1502 TGACAAGCAAAGGTGGTTCTCAGAAATCCAACTTCTACAACTCAACACTTGGTCTCGGCC 1561
Query 1532 GCTATTTCTCCCTCTCTGAGCTTCAAGAAGTCACAAAGAACTTCGATGCATCAGAGATCA 1591
||||||||||||| || ||||||||||||| |||||||||||| || ||||| |||| |
Sbjct 1562 GCTATTTCTCCCTTTCAGAGCTTCAAGAAGCCACAAAGAACTTTGAAGCATCCCAGATTA 1621
Query 1592 TCGGTGTTGGTGGATTTGGTAACGTTTACATTGGTACCATTGACGATGGAACTC-AAGTT 1650
|||||||||| ||||| |||||||| |||||||| ||| | ||||||||||| | ||||
Sbjct 1622 TCGGTGTTGGAGGATTCGGTAACGTCTACATTGGAACCCTCGACGATGGAAC-CAAAGTC 1680
Query 1651 GCTATCAAACGAGGCAATCCACAGTCAGAGCAAGGGATCACAGAGTTTCATACAGAGATT 1710
||| ||||| |||| ||||||||||| || ||||| ||||| |||||||| ||||||||
Sbjct 1681 GCTGTCAAAAGAGGTAATCCACAGTCTGAACAAGGAATCACTGAGTTTCAGACAGAGATC 1740
Query 1711 CAGATGCTATCTAAGCTTAGACACAGACACTTAGTCTCATTGATTGGATACTGCGATGAG 1770
|||||||| |||||||| |||||||||||||| ||||| |||||||| ||||| ||||||
Sbjct 1741 CAGATGCTTTCTAAGCTCAGACACAGACACTTGGTCTCCTTGATTGGTTACTGTGATGAG 1800
Query 1771 AACGCAGAGATGATCCTT-GTATACGAATACATGTCCAATGGTCCTTTTAGAGATCATCT 1829
||| | |||||||| ||| || || || | ||||||||||||||| || || || || ||
Sbjct 1801 AACTCTGAGATGAT-CTTAGTCTATGAGTTCATGTCCAATGGTCCATTCAGGGACCA-CT 1858
Query 1830 T-TATGGGAAGAATCTTTCTCCTTTGACTTGGAAACAAAGACTGGAGATCTGCATTGGAG 1888
| ||||| ||||| ||| ||||| | || ||||||||| |||| ||||| || ||||||
Sbjct 1859 TGTATGGAAAGAACCTTGCTCCTCTAACCTGGAAACAACGACTTGAGATATGTATTGGAT 1918
Query 1889 CTGCTCGTGGACTTCACTATTTACACACAGGAACAGCTCAAGGCATTATCCATCGTGACG 1948
|||| ||||| |||||||| |||||||||||||||||||| || |||||||| ||||| |
Sbjct 1919 CTGCACGTGGGCTTCACTACTTACACACAGGAACAGCTCAGGGGATTATCCACCGTGATG 1978
Query 1949 TCAAATCCACAAATATTCTTCTTGATGAAGCTTTAGTTGCAAAAGTTGCTGACTTTGGTC 2008
|||||||||| || |||||||| ||||| ||||||||||| ||| | |||||||||||||
Sbjct 1979 TCAAATCCACCAACATTCTTCTCGATGACGCTTTAGTTGCTAAACTCGCTGACTTTGGTC 2038
Query 2009 TCTCCAAAGACGTTGCCTTTGGACAAAACCATGTTAGTACGGCTGTGAAAGGTAGTTTTG 2068
| || ||||| ||||| ||||||||||||||||| || |||||||| ||||| ||||| |
Sbjct 2039 TTTCTAAAGATGTTGCTTTTGGACAAAACCATGTCAGCACGGCTGTAAAAGGAAGTTTCG 2098
Query 2069 GGTATTTAGACCCGGAATACTTCAGGAGACAGCAACTTACAGACAAATCCGATGTTTATT 2128
| || ||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 2099 GATACTTAGACCCGGAATACTTTAGAAGACAGCAACTTACCGACAAATCCGATGTTTATT 2158
Query 2129 CCTTTGGTGTTGTTCTACTAGAAGCTCTATGTGCAAGACCAGCCATTAATCCTCAGCTTC 2188
|||||||||||||||| ||||||||||| || ||||||||||| || ||||||||||| |
Sbjct 2159 CCTTTGGTGTTGTTCTTCTAGAAGCTCTGTGCGCAAGACCAGCAATCAATCCTCAGCTAC 2218
Query 2189 CAAGGGAACAAGTTAACTTAGCCGAATGGGCTATGCTATGGAAACAAAAAGGT-TTACTC 2247
|||| || || |||||| |||| |||||||| |||| |||||||| |||||| || |||
Sbjct 2219 CAAGAGAGCAGGTTAACCTAGCTGAATGGGCAATGCAATGGAAACGAAAAGGACTT-CTC 2277
Query 2248 GAAAAGATCATCGACCCTCATCTCGTTGGTGCTG-TGAATCCTGAATCAATGAAAAAGTT 2306
||||||||||| || |||||| | | ||| | | | ||||||||||| ||||| |||||
Sbjct 2278 GAAAAGATCATTGATCCTCATTTGGCTGGAAC-GATTAATCCTGAATCGATGAAGAAGTT 2336
Query 2307 TGCAGAAGCTGCAGAGAAGTGTTTAGCAGATTATGGTGTTGATAGACCAACAATGGGAGA 2366
||| |||||||||||||||||||| | ||| |||||||||||||| ||||||||||||||
Sbjct 2337 TGCTGAAGCTGCAGAGAAGTGTTTGGAAGACTATGGTGTTGATAGGCCAACAATGGGAGA 2396
Query 2367 TGTAT-TGTGGAACTTAGAATATGCTCTTCAGCTTCAAGAGGCTTTTTCTCAGGGTAAAG 2425
||| | | |||||||| || ||||||||||||||||||||||| || | ||||| ||||
Sbjct 2397 TGT-TCTATGGAACTTGGAGTATGCTCTTCAGCTTCAAGAGGCATTCACCCAGGGAAAAG 2455
Query 2426 C 2426
|
Sbjct 2456 C 2456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98653734550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5