BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21490.1
Length=836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899415 jgi|Araly1|899415|Al_scaffold_0004_65 582 1e-165
> Ahg899415 jgi|Araly1|899415|Al_scaffold_0004_65
Length=564
Score = 582 bits (315), Expect = 1e-165
Identities = 488/570 (86%), Gaps = 18/570 (3%)
Strand=Plus/Plus
Query 86 ATGGCGGATTTGAGGGACGAAAAAGGTAATCCGATCCATCTAACTGA-CACACAGGGAAA 144
||||||||||||| ||||||| ||| || || ||||||||||| || | ||| |||||
Sbjct 1 ATGGCGGATTTGAAGGACGAACGAGGAAACCCAATCCATCTAACCGATGA-ACACGGAAA 59
Query 145 CCCAATTGTCGACCTGACTGATGAGCACGGTAACCCCATGTACCTAACCGGTGTTGTTAG 204
||| || | | |||||||||||| ||||||||||||| |||||||||| |||| ||
Sbjct 60 CCC-GGTG-C-AACTGACTGATGAGTTCGGTAACCCCATGCACCTAACCGGCGTTGCCAG 116
Query 205 CTCCACTCCTCAGCATAAGGAGAGTACTACCAGCGACATTGCAGAGCACCCTACTAGCAC 264
|||| |||||||| ||||||||||||||||| |||||||||| |||||| ||||||||||
Sbjct 117 CTCCGCTCCTCAGTATAAGGAGAGTACTACCGGCGACATTGCTGAGCACTCTACTAGCAC 176
Query 265 CGTTGGAGAAACACATCCGG-C-A-GC-TG-CTCCAGCTGG-TGCTGGTGCTGCCACCGC 318
|||| || ||||||||||| | | || | | || | || |||| |||| |||||||
Sbjct 177 TGTTGAAGGAACACATCCGGTCGATGCAGGAATACATCCGGCAGCTGCTGCTACCACCGC 236
Query 319 TGCCACTGCGACAGGAGTCTCTGCTGGTACTGGAGCAACCACCACAGGGCAGCAACACCA 378
|||| |||| ||||||||| |||||||||| ||||||||| ||||||||||||| || ||
Sbjct 237 TGCCGCTGCCACAGGAGTCACTGCTGGTACCGGAGCAACCGCCACAGGGCAGCAGCAGCA 296
Query 379 TGGGTCGCTTGAAGAGCATCTTCGTCGGTCTGGAAGTTCATCTAGCTCTAGCTCGGAGGA 438
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGGCTCGCTTGAAGAGCATCTTCGTCGGTCTGGAAGTTCATCTAGCTCTAGCTCGGAGGA 356
Query 439 TGATGGGCAAGGAGGGAGGAGGAAGAAGAGCATAAAGGAGAAAATTAAAGAGAAGTTCGG 498
|||||||||||||||| || ||||||||||||||||||||||||| ||||| ||||| |
Sbjct 357 TGATGGGCAAGGAGGGCGGCGGAAGAAGAGCATAAAGGAGAAAATCAAAGAAAAGTTTAG 416
Query 499 TAGCGGCAAACACAAGGACGAACAAACACCA-GCGACCGCCACAACAACAG--G-A-CCT 553
|||| |||| ||||||||||||||||| ||| || || ||||| || || | | | ||
Sbjct 417 TAGCAGCAAGCACAAGGACGAACAAACGCCAAGC-ACAGCCACTACTACTGTCGGATCCA 475
Query 554 GCCACTACCGACCAACCTCACGAGAAGAAGGGCATTCTCGAGAAGATCAAGGACAAGCTT 613
| || || |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 476 -CAACCACTGACCAACCCCACGAGAAGAAGGGCATTCTCGAGAAGATCAAGGACAAACTT 534
Query 614 CCAGGCCACCATAACCACAACCACCCATGA 643
|| |||||||| ||||| ||||||||||||
Sbjct 535 CCTGGCCACCACAACCATAACCACCCATGA 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30917685687
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5