BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21500.2
Length=1771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481014 jgi|Araly1|481014|fgenesh2_kg.4__74__AT2G21500.1 1877 0.0
Ahg490685 jgi|Araly1|490685|fgenesh2_kg.7__118__AT4G39140.3 719 0.0
> Ahg481014 jgi|Araly1|481014|fgenesh2_kg.4__74__AT2G21500.1
Length=1627
Score = 1877 bits (1016), Expect = 0.0
Identities = 1285/1409 (91%), Gaps = 41/1409 (3%)
Strand=Plus/Plus
Query 89 AACTTTCCGGCGACGTTTTCCGACTTCCGAGAGCAGGTTTTGAGGTGGTTTTATGCGCCA 148
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AACTTCCCGGCGACGTTCTCCGACTTCCGAGAGCAGGTTTTGAGGTGGTTTTATG-G--- 56
Query 149 AAACATCTAACCGGAGTGTCGTTGTACGGTGCTTAGTAGTTTTCAATAACACGCTTCAGT 208
|||||||||||||||| |||| |||||||||||||||||| | |||| |||||||
Sbjct 57 ----ATCTAACCGGAGTGTCTTTGTGTGGTGCTTAGTAGTTTTCAGTCACACTCTTCAGT 112
Query 209 TATGGGGAATGCTTGTTGTGTTGCTACTCGAGACAAAATGGTTGTGCCTAATACATCAGC 268
||||||||||||||||||||| ||| ||||||| |||||||||||| |||||| ||| ||
Sbjct 113 TATGGGGAATGCTTGTTGTGTCGCTGCTCGAGATAAAATGGTTGTGTCTAATATATCGGC 172
Query 269 AGTCGAGAATTTTCAAAGAAAC------AATGTGAGGTATTCTCCTAACTGGAGCTTCCG 322
|||||||||||| ||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 173 AGTCGAGAATTTGCAAAGAAACAATGTGAATGTGAGGTATTCTCCTAATTGGAGCTTTCG 232
Query 323 ATGGGATAATAGAGGAGGACGCGTGGCAGGGGAAGAGACCTCTGTTAGTTTGTTATCTGA 382
|||||||||| | ||||||| |||||||| |||||||||||||| |||| |||||||||
Sbjct 233 ATGGGATAAT--A-GAGGACGAGTGGCAGGTGAAGAGACCTCTGTCAGTTGGTTATCTGA 289
Query 383 TCGGATTAGTCGTAACGATGTCTCTGATGTCAAATCTGAAACTGCTCTTGTATCATCACA 442
| ||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||||
Sbjct 290 TGGGATTAGTCGTAACGATGTGTCTGATGTCAAATCGGAATCTGCTTTTGTATCATCACA 349
Query 443 AGGTTCTCCTTTGGACAATTTTCAGACGCAGTCATGGCAGAAATCTCCTGCTTCTGATCA 502
||| ||||||||||||||||||||| |||||||||||||||| |||||| |||| |||||
Sbjct 350 AGGGTCTCCTTTGGACAATTTTCAGGCGCAGTCATGGCAGAAGTCTCCTTCTTCAGATCA 409
Query 503 ATCATTTTCAAGAATTGCCTCTATTGACTCTGTCTCTGAACAGATCACCCAAAAAACAAA 562
||| |||| | || | | |||| | | |||||||||||||||||||| ||||| ||
Sbjct 410 ATC-TTTT---G-CTT--C-C-ATTGGCACCGTCTCTGAACAGATCACCCAGAAAACTAA 460
Query 563 TGATTCAACCGACCCTACTTATTATCCATCTCCTGCAAAACTGTCTCTTTCATTGGCTTC 622
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 461 TGATTCAACCGACCCTGCTTTTTATCCATCTCCTGCAAAACTGTCTCTTTCATTGGCTTC 520
Query 623 TCAACCATCATCCTTCTCAGTGTCACCACTGTCAAGTCAGTCCCACTTGCCAATGCCACC 682
|||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 521 TCAACCATCATCCTTCTCAGCGTCACCACTGTCATCCCAGAGCCACTTGCCAATGCCACC 580
Query 683 TGCAAGTTCATCCCAATTAAAGCTGACACCGCCCCCTCGTCTATCAAAGCAAGTCTCATA 742
||||||||| || || || ||||| |||||||||||| || ||||||||||||||||| |
Sbjct 581 TGCAAGTTCGTCGCAGTTGAAGCTAACACCGCCCCCTTGTTTATCAAAGCAAGTCTCAGA 640
Query 743 TGGTCAAATCTTTGGATTCACCTCACCGAGCAGAAGCTCAGCAACTGAAGAGAGGCTGGG 802
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 TGGTCGAATCTTTGGATTCACCTCACCGAGCAGAAGCTCAGCAACTGAAGAGAGGCTGGG 700
Query 803 GAATGAATCTCAGTCTGATGGTTGGTCCATGCAAGCTTTTTCTGAAATGATGGCGTATTC 862
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 701 GAATGAATCTCAGTCTGATGGTTGGTCCATGCAAGCCTTTTCTGAAATGATGGCGTATTC 760
Query 863 TCGCAGAGAGTCTTGCTCTTACGATAACGAGTGCTTTGGGCTTCGTCGTGACAAGATAGA 922
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 761 TCGCAGAGAGTCTTGCTCTTCCGATAACGAGTGCTTTGGGCTTCGTCGTGACAAGATAGA 820
Query 923 CAATCT-TGGAAGTAGAAAGTCCAATGATCAGCAAAACTGTGGTGCTTGCTCGAGATCCT 981
|||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 CAAT-TATGGAAATAGAAAGTCCAATGATCAGCAAAACTGTGGTGCTTGCTCGAGATCCT 879
Query 982 TGTCTGAGAAATCTTTGTTGAGTAGCCAAAAAATCTTTGCCACTAACGAGCTCTCCGTAG 1041
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | |
Sbjct 880 TGTCTGAGAAATCTTTGTTGAGTAGCCAAAAGATCTTTGCCACTAATGAGCTCTCTATCG 939
Query 1042 CTGCGAT-TCTAGCATGTGGGCACGTCTATCATTCAGAGTGTTTAGAGCAGATGACACCT 1100
|||| || | |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 CTGCAATAT-TAGCTTGTGGGCACGTCTATCATTCAGAGTGTTTAGAGCAGATGACACCT 998
Query 1101 GAAATCGACAAATTCGATCCTTCTTGTCCCATCTGCACACTGGGTGAGAAGAAAACATTC 1160
||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct 999 GAAATCGACAAATTCGACCCTCCTTGTCCCATCTGCACCCTGGGTGAGAAGAAAACATTC 1058
Query 1161 AAACTGTCGGAAAAAGCATTAAAGGCAGATTTGGAAATGAAAGCTAGACACAACAAGAGA 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 AAACTGTCGGAAAAAGCATTAAAGGCAGATTTGGAAATGAAAGCTAGACACAACAAGAGA 1118
Query 1221 CTAAGAAACCGCGTTGTGGACAGCGATGAATTTGTCAAGTTTAATAACAACCACGAAGCG 1280
||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||
Sbjct 1119 CTAAGAAACCGCGTTGTGGACAGCGATGACTTTGTCATGTTTAATAACAACCACAAAGCG 1178
Query 1281 GCAG------TAG--G-ATACAAAGGTAAAACCCCAAAGCTGATATCAAGTTCAAGCTTG 1331
|||| ||| | ||||||||| ||| ||||||||||| |||| ||||||||||||
Sbjct 1179 GCAGCAACAGTAGCAGCATACAAAGGCAAAGCCCCAAAGCTGCTATCGAGTTCAAGCTTG 1238
Query 1332 AGAAGCTATTCCCCAAAGCCTTTCCTTGCTAGACACTTCTCTTTCGGGTCCAGAAGTAAT 1391
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1239 AGAAGCTATTCCCCAAAGCCTTTCCTTGCGAGACACTTCTCTTTCGGATCCAGAAGTAAT 1298
Query 1392 AGTGTTAAA-TCCCCAAAAGAGATTCATTCCCCGAGCTCTCTTAGAAAGAAAGGCTTCTT 1450
||||||||| || | ||| |||| ||||||| ||||||||| |||||||||||||||||
Sbjct 1299 AGTGTTAAAATCACGAAA-GAGAATCATTCCGCGAGCTCTCACAGAAAGAAAGGCTTCTT 1357
Query 1451 TTGGACCAAATCTAGCAAAATTTGAAACT 1479
||||||||||||||||||| |||||||||
Sbjct 1358 TTGGACCAAATCTAGCAAACTTTGAAACT 1386
Score = 156 bits (84), Expect = 6e-37
Identities = 121/137 (88%), Gaps = 9/137 (7%)
Strand=Plus/Plus
Query 1636 GTTTGTGTATGTATTACAGAAAAGTTTCTCACTAGTCTCCCATTAtttttttGTTTGTGC 1695
|||| ||| |||||||||||||| |||||||| |||||||| |||||||| ||| |||
Sbjct 1443 GTTT-TGTGTGTATTACAGAAAATTTTCTCACAAGTCTCCC---ATTTTTTT-TTT-TGC 1496
Query 1696 ATTCCCAATTACACTTGTAAATATATAATTATAACAATATAAGGTAAAAATGATCTGGCT 1755
||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||| |
Sbjct 1497 ATTCCCAATTACACTTGTAAATATATATTTATAATAATATAAGGTAAAA-TGATCTGACA 1555
Query 1756 GTGCACCAGTAGG-TGT 1771
||||||||| ||| |||
Sbjct 1556 GTGCACCAG-AGGATGT 1571
> Ahg490685 jgi|Araly1|490685|fgenesh2_kg.7__118__AT4G39140.3
Length=1701
Score = 719 bits (389), Expect = 0.0
Identities = 1053/1350 (78%), Gaps = 140/1350 (10%)
Strand=Plus/Plus
Query 206 AGTTATGGGGAATGCTTGTTGTGTTGCTACTCGAGACAAAATGGTTGTGCCTAATACATC 265
||||||||||||||| |||||||||||| |||||||||||||||| ||||||||| ||||
Sbjct 216 AGTTATGGGGAATGCATGTTGTGTTGCTGCTCGAGACAAAATGGTGGTGCCTAATTCATC 275
Query 266 AGC-AGTCGAGAATTTTCAAAGAAACAATGTGAGGTATTCTCCTAAC-TGGAGCTTCCGA 323
||| || |||||||| || || | |||||| ||| ||||||| || ||||| |||||
Sbjct 276 AGCTGGT-GAGAATTTGCAGAGGAGCAATGTCAGGCATTCTCC-GACTTGGAGTTTCCGT 333
Query 324 TGGGATAATAGAGGAGGACGCGTGGCAGGGGAAGAGACCTCTGTTAGTTTGTTATCTGAT 383
||||||||| | ||||||| || || || ||||| |||||| | |||| ||||||||||
Sbjct 334 TGGGATAAT--A-GAGGACGTGTAGCTGGTGAAGAAACCTCTCTCAGTTGGTTATCTGAT 390
Query 384 CGGATTAGTCGTAACGATGTCTCTGATG-TCAAATCTGAAACTGCTCTTGTATCATCACA 442
|||||||||| ||||||| |||||| | |||||| |||| ||||| |||||||||| |
Sbjct 391 GGGATTAGTCGGAACGATGGCTCTGA-GATCAAATTTGAATCTGCTTTTGTATCATCTGA 449
Query 443 AGGTTCTCCTTTGGACAATTTTCAGACGCAGTCATGGCAGAAATCTCCTGCTTCTGATCA 502
|||||| |||||||||| ||||| ||| ||| ||| ||||||||| ||||| || ||||
Sbjct 450 AGGTTCCCCTTTGGACAGTTTTCGGACACAGGCATTGCAGAAATCCCCTGCCTCAGATCT 509
Query 503 ATCATTTT-CAAG-AATTGCCTCTATTGACT-CTGTC-TCTGAACAGATCACCCAAAAAA 558
||| |||| |||| |||| | || | ||| | | ||| || |||||| ||| |
Sbjct 510 ATC-TTTTCCAAGAAATT-CTTCCA-TGAATACAGTCTTC-GAACAG--------AAAGA 557
Query 559 CAAATGATTCAACCGACCCT--A-C-TTAT--TATCCATCTCCTGCAAAACTGTCTCTTT 612
||||| |||||| || || | | || |||||||||||||||||| |||||||||
Sbjct 558 -AAATGTTTCAACAGAGTCTGCAGCACCATCATATCCATCTCCTGCAAAATTGTCTCTTT 616
Query 613 CATTGGCTTCTCAACCATCATCCTTCTC-AGTGTCACCACTGTCAAGTCAGTCCCACTTG 671
|| ||||||| ||||||||||| ||| | | |||||||| | || |||||| |
Sbjct 617 CACTGGCTTCACAACCATCATCTTTCCCTA-CATCACCACT-T----TC-GTCCCA-AAG 668
Query 672 CCA-ATGCCA-CCTGCAAGTTCATC-CCAATTAAAGCTGACACCGCCCCCTCGTCTATCA 728
| | || || |||||||||||||| || ||||| ||||||| | |||||||||||||
Sbjct 669 CTACTTG-CACCCTGCAAGTTCATCGACACTTAAA-CTGACACATCGCCCTCGTCTATCA 726
Query 729 AAGCAAGTCTCATATGGTCAAATCTTTGGATTC-ACCTCACCGAGCAGAAGCTCAGCAAC 787
|||||||||||| |||||||||||| ||| | | | ||||| || |||| |||||||||
Sbjct 727 AAGCAAGTCTCAGATGGTCAAATCTATGG-TCCGAACTCACTAAGTAGAAACTCAGCAAC 785
Query 788 TGAAGAGAGGC-TGG---------G-GA-ATGA---ATCTCAGTCT-G---A--T---GG 823
||||||||||| || | || |||| ||||||||| | | | ||
Sbjct 786 TGAAGAGAGGCAGGGAACTCCTTTGAGATATGATTCTTCTCAGTCTGGACCATCTGAAGG 845
Query 824 TTGGTCCA-TGCAAGCTTTTTCTGAAATGATGGCGTATTCTCGCAG--A-GAGTC-TTGC 878
||||| || ||||||| ||||||||||||||| | | ||||||||| | || | |||
Sbjct 846 TTGGT-CACTGCAAGCCTTTTCTGAAATGATGTCATCTTCTCGCAGCAACGAACCTTTG- 903
Query 879 TCTTACGATAACGAGTGCTTTGGGCTTCGTCGTGACAAGATAGACAATCTTGG-AAGTAG 937
||||| ||||| || ||||||||||||| ||||||||||||||| ||| ||| || |
Sbjct 904 TCTTATGATAATGATTGCTTTGGGCTTCAACGTGACAAGATAGACCATCATGGCAA-CCG 962
Query 938 AAAGTCCAATG-ATCAGCA--AAAC-TGTGGTGCTTGCTCGAGATCCTTGTCTGAGAAAT 993
|| |||||| | ||||||| |||| || ||||||||||| ||| ||||||| |||||||
Sbjct 963 AATGTCCAA-GCATCAGCAGCAAACTTGCGGTGCTTGCTCTAGACCCTTGTCAGAGAAAT 1021
Query 994 CTTTGTTGAGTAGCCAAAAAATCTT--TGCCACTAACGAGCTCTCCGTAG-CTGCGATTC 1050
| |||| ||| |||||||| ||||| || || ||||||||||| || | |||| ||||
Sbjct 1022 CCTTGTGGAGCAGCCAAAAGATCTTCATG--ACCAACGAGCTCTCTGT-GTCTGCAATTC 1078
Query 1051 TAGCATGTGGGCACGTCTATCATTCAGAGTGTTTAGAGCAGATGACACCTGAAATCGACA 1110
|||| |||||||| ||||||||| |||||||||||||||||||| || |||||||| |
Sbjct 1079 TAGCTTGTGGGCATGTCTATCATGGGGAGTGTTTAGAGCAGATGACGCCGGAAATCGATA 1138
Query 1111 AATTCGATCCTTCTTGTCCC-ATCTGCACACTGGGTGAGAAGAAAACATTC-AAACTGTC 1168
||||||| ||||| || ||| ||||| ||| |||||||||||||||| | || |||||
Sbjct 1139 AATTCGACCCTTCATG-CCCAATCTGTACAATGGGTGAGAAGAAAAC-GGCGAAGCTGTC 1196
Query 1169 GGAAAAAGCATT-AAAGGCAGATTTGGAAATGAAAGCTAGACACAACAAGA-GACTAAGA 1226
|| ||||| || ||| | ||| |||| |||||||| |||||||||| | |||| |||
Sbjct 1197 AGAGAAAGCGTTGAAA-GTAGAGATGGATTTGAAAGCTCGACACAACAA-ACGACTCAGA 1254
Query 1227 AACCGCGTTGTGGACA--G-C---GA-T--GA--A-TTTGTCAA-GTTTAATAACAACCA 1273
||||| ||| |||||| | | || | || | ||||| || |||| || ||| |||
Sbjct 1255 AACCGAGTTTTGGACAGTGACTTTGATTGCGATGATTTTGT-AATGTTTGATCACAGCCA 1313
Query 1274 CGAAG-CGGCAGTAGGATACA--AAGGTAA-AACCCCAAAGCTGATATCAAGTTCAAGCT 1329
| | | | |||| || | ||| || | || | ||| ||| ||| | || ||||| ||
Sbjct 1314 C-AGGACAGCAGCAGCA-ACAGCAA-GCAAGAGCCCTAAA-CTGCTCTCGAGTTCGAG-- 1367
Query 1330 TG--AGAAGCTATTCCCCAAAGCCTTTCCTT-GCTAGACACTTCTCTTTCGGGTCCAGAA 1386
|| | ||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||
Sbjct 1368 TGCCAAAAGCTATTCTGCAAAGCCTTT-CTTGGCTCGACACTTCTCTTTCGGGTCCAGAA 1426
Query 1387 GTAATAGTGTTAAATCCCCAAAAGAGATTCATTCCCCGAGCTCTCTTAGAAAGAAAGGCT 1446
||||| | | |||||||| ||||||| || |||| || | | |||||||||||
Sbjct 1427 GTAAT--TAT-AAATCCCCTAAAGAGAATC-TTCC---AG-TGA---A-AAAGAAAGGCT 1474
Query 1447 TCTTTTGGACCAAATCTAGCAAAATTTGAA 1476
|||| ||||||||||| |||||||| ||||
Sbjct 1475 TCTTCTGGACCAAATCCAGCAAAATATGAA 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66467477525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5