BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21510.1
Length=1324
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481016 jgi|Araly1|481016|fgenesh2_kg.4__76__AT2G21510.1 1803 0.0
Ahg490686 jgi|Araly1|490686|fgenesh2_kg.7__119__AT4G39150.1 854 0.0
Ahg918615 jgi|Araly1|918615|Al_scaffold_0734_1 520 1e-146
> Ahg481016 jgi|Araly1|481016|fgenesh2_kg.4__76__AT2G21510.1
Length=1152
Score = 1803 bits (976), Expect = 0.0
Identities = 1101/1160 (95%), Gaps = 13/1160 (1%)
Strand=Plus/Plus
Query 46 TAGAATCGAGAGATATT-GTTGCCCCCATTTACATTTCTGCACGATCATCATCATGGTGA 104
|||||||||||| | || ||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1 TAGAATCGAGAG-TTTTCGTTGCCCCCATTTACATTTCTTCACGATCATCATTATGGTGA 59
Query 105 AAGAGACTGAATACTACGAGATCTTAGGCGTCAAAACTGATGCTTCAGATGCTGAGATTA 164
| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 60 AGGAGAATGAGTACTACGAGATCTTAGGCGTCAAAACTGATGCTTCCGATGCTGAGATTA 119
Query 165 AAAAGGCTTACTACTTAAAAGCAAGGAAAGTTCATCCAGACAAGAACCCTGGAGACCCTC 224
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 120 AAAAGGCTTACTACTTAAAAGCAAGGAAAGTTCACCCAGACAAGAACCCTGGAGACCCTC 179
Query 225 AAGCTGCTAAAAACTTTCAGGTTTTAGGTGAGGCTTATCAGGTTCTAAGCAATCCGGATA 284
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 180 AAGCTGCTAAGAACTTTCAGGTTTTAGGTGAGGCTTATCAGGTTCTGAGCAATCCGGAGA 239
Query 285 AGCGAGCAGCTTATGACAAATATGGCAAAGAAGGGGTCCAACAGGATGCAATGGTTGATC 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGCGAGCAGCTTATGACAAATATGGCAAAGAAGGGGTCCAACAGGATGCAATGGTTGATC 299
Query 345 CTGCAGCTGTATTTGGTATGCTTTTCGGAAGCGAAGTCTTTGAAGAATACGTTGGCCAGC 404
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 300 CTGCAGCTGTATTTGGTATGCTTTTCGGAAGCGAAGTCTTTGAAGAATATGTTGGCCAGC 359
Query 405 TTGCACTTGCTTATTTGGCATCTATCGAAGCTGACTTAGAATCACATGACCCTGAAATCA 464
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 360 TTGCACTTGCTTATTTGGCATCAATCGAAGCTGACTTAGAATCACATGAGCCTGAAATCA 419
Query 465 GAAAGCAAATGCTTCAAGACAAGATCAAAGCTCTTCAAAAGGAGAGGGAAGACAAGCTCG 524
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 420 GAAAGCAAATGCTTCAAGACAAGATCAAAGCTCTACAAAAGGAGAGGGAAGACAAACTCG 479
Query 525 CCGCTACATTGAAAAACAAACTTGAACCCTTTGTGGAAAGACAAAC-AGATGAATTTATC 583
|||||||||||||||||||||||||||| ||||| ||| ||||||| | |||||||||||
Sbjct 480 CCGCTACATTGAAAAACAAACTTGAACCGTTTGTAGAAGGACAAACCA-ATGAATTTATC 538
Query 584 GAATGGGCAAACGAAGAGGCAAAGCGGCTTTCTTCTGCCGGTTTTGGCGAGGCAATGATG 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GAATGGGCAAACGAAGAGGCAAAGCGGCTTTCTTCTGCCGGTTTTGGCGAGGCAATGATG 598
Query 644 CATACTATTGGTTACATTTACACAAGAAAAGCTGCTAAAGAAATCGGGAAAGACAAGCGA 703
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 599 CATACTCTTGGTTACATTTACACAAGAAAAGCTGCTAAAGAAATCGGTAAAGACAAGCGG 658
Query 704 TATATGAAAGTACCATTCTTAGCTGAATGGGTGCGTGACAAAGGCCACCATATGAAATCT 763
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 659 TATATGAAAGTGCCGTTCTTAGCGGAATGGGTGCGTGACAAAGGCCACCATATGAAATCT 718
Query 764 CAAGTGATGGCTGCTTCTGGTGCGGTTTCGTTACTTCAGTTGCAGGATGAAGTAAACAAG 823
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 719 CAAGTGATGGCTGCTTCTGGTGCGGTTTCATTACTTCAGTTGCAGGATGAAGTGAACAAG 778
Query 824 TTGAATGAACACCAAGGAGAGAACAAAGAGGAACATATTCAGAAAGCTATTGAAGCTAAA 883
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 779 TTGAATGAACACCAAGGAGAGAACAAAGAGGAGCATATTCAGAAAGCCATTGAAGCTAAA 838
Query 884 ATGGATGCTTTGCTTCAATCTCTTTGGCAAATCAATGTTCTCGACATCGAATCCACGCTA 943
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ATGGATGCTTTACTTCAATCTCTTTGGCAAATCAATGTTCTCGACATCGAATCCACGCTA 898
Query 944 TCTCGTGTTTGCCAATCTGTGCTTAAAGATCCAAGTGTTTCGAAGGATGTTCTTCGAGCT 1003
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 899 TCTCGTGTTTGCCAATCTGTTCTTAAAGATCCAAGTGTTTCCAAGGATGTTCTTCGAGCT 958
Query 1004 CGTGCCATAGGACTGAAGAAACTTGGAACGATCTTCCAGGGTGCTAAGAAGCCGTACACG 1063
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 959 CGTGCCATAGGACTGAAGAAACTTGGAACGATCTTCCAGGGTGCCAAGAAGCCGTACACG 1018
Query 1064 AGAGGAAGCAGCTTGCGTCGGGAAGCCACCACCGTGAAAATGGACACCGGAGGTTCTTCA 1123
|||||||||||||||||||| ||| || | | |||||| ||||||| ||||||||||||
Sbjct 1019 AGAGGAAGCAGCTTGCGTCGCGAA-CC-CG-CTGTGAAAGTGGACACGGGAGGTTCTTCA 1075
Query 1124 AAGGCGACGTCTTGAAACTCCGGA--ACTTAAAATGCTGT-TTCTTTTATTGGTTGAAGT 1180
|||||||||||||||||||||| | || || | || |||||||||||| |||| |
Sbjct 1076 AAGGCGACGTCTTGAAACTCCG-ATCACCGGAA-T-CTAAATTCTTTTATTGGCTGAATT 1132
Query 1181 TGGATTTGTCCTTCGTTTTT 1200
||||||||||||| ||||||
Sbjct 1133 TGGATTTGTCCTTTGTTTTT 1152
> Ahg490686 jgi|Araly1|490686|fgenesh2_kg.7__119__AT4G39150.1
Length=1060
Score = 854 bits (462), Expect = 0.0
Identities = 797/957 (83%), Gaps = 30/957 (3%)
Strand=Plus/Plus
Query 185 GCAAGGAAAGTTCATCCAGACAAGAACCCTGGAGACCCTCAAGCTGCTAAAAACTTTCAG 244
|||||| ||||||||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct 1 GCAAGGCAAGTTCATCCAGACAAGAACCATGGTGATCCTCAAGCTGCTAAAAACTTTCAG 60
Query 245 GTTTTAGGTGAGGCTTATCAGGTTCTAAGCAATCCGGATAAGCGAGCAGCTTATGACAAA 304
| ||||||| ||||| || ||||| ||| ||||||| |||||| ||||||||||||||
Sbjct 61 ATACTAGGTGAAGCTTACCAAGTTCTTAGCGATCCGGAGAAGCGAACAGCTTATGACAAA 120
Query 305 TATGGCAAAGAAGGGGTCCAACAGGATGCAATGGTTGATCCTGCAGCTGTATTTGGTATG 364
| ||| ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 TTTGGAAAACAAGGGGTTCAACAGGATGCAATGGTTGATCCTGCAGCTGTGTTTGGTATG 180
Query 365 CT-TTTCGGAAGCGAAG-TCTTTGAAGAATACGTTGGCCAGCTTGCACTTGCTT-ATTTG 421
|| ||| || ||||| | ||||||| || |||||||| || ||||||||||||| | | |
Sbjct 181 CTCTTT-GGTAGCGA-GCTCTTTGAGGAGTACGTTGGGCAACTTGCACTTGCTTCAATAG 238
Query 422 GCATCTATCGAAGCTGACTTAGAATCACATGACCCTGAAATCAGAAAGCAAATGCTTCAA 481
| || ||||| ||||| |||||||| |||| ||||| || ||||| || |||||||
Sbjct 239 CC-TCAATCGATGCTGAATTAGAATCTTATGAGCCTGAGATTAGAAAACAGATGCTTCGG 297
Query 482 GACAAGATCAAAGCTCTTCAAAAGGAGAGGGAAGACAAGCTCGCCGCTACATTGAAAAAC 541
|| ||||||||||| | ||||| || || | ||||||||||| ||||||| |||||| |
Sbjct 298 GAAAAGATCAAAGCGATGCAAAACGATAGAGTAGACAAGCTCGTCGCTACACTGAAAATC 357
Query 542 AAACTTGAACCCTTTGTGGAAAGACAAACAGATGAATTTATCGAA-TGGGCAAACGAAGA 600
||||| ||||| || |||||| ||||||| ||||||||| | ||| ||||| | || |||
Sbjct 358 AAACTCGAACCATTCGTGGAAGGACAAACTGATGAATTTGT-GAACTGGGCCACCGCAGA 416
Query 601 GGCAAAGCGGCTTTCTTCTGCCGGTTTTGGCGAGGCAATGATGCATACTATTGGTTACAT 660
|||||| ||||||||| | || |||||||| ||||||||| | || || |||| |||||
Sbjct 417 GGCAAAACGGCTTTCTACAGCTGGTTTTGGTGAGGCAATGCTTCACACCGTTGGATACAT 476
Query 661 TTACACAAGAAAAGCTGCTAAAGAAATCGGGAAAG-ACAAGCGATATATGAAAGTACCAT 719
|||||| ||||||||| |||||||| |||| |||| | || || || ||||||||||| |
Sbjct 477 TTACACTAGAAAAGCTTCTAAAGAACTCGG-AAAGGATAAACGTTACATGAAAGTACCTT 535
Query 720 TCTTAGCTGAATGGGTGCGTGACAAAGGCCACCATA-TGAAATCTCAAGTGATGGCTGCT 778
| ||||| |||||||| ||||||||||||||||| | | |||||||||||||||||||||
Sbjct 536 TTTTAGCCGAATGGGTTCGTGACAAAGGCCACCA-AGTAAAATCTCAAGTGATGGCTGCT 594
Query 779 TCTGGTGCGGTTTCGTTACTTCAGTTGCAGGATGAAGTAAACAAGTTGAATGAACACCAA 838
|| |||||||| ||||| |||||||||||||||||| | | |||| ||||| ||
Sbjct 595 TCGGGTGCGGTCTCGTTGCTTCAGTTGCAGGATGAAATGAGCAAGCTGAAT---CAT--- 648
Query 839 GGAGAGAACAAAGAGGA-ACATATTCAGAAAGCTATTGAAGCTAAAATGGATGCTTTGCT 897
|||||||||||||| || | ||||||||||||| ||||||||||||| ||||| ||||
Sbjct 649 GGAGAGAACAAAGAAGAGA-ATATTCAGAAAGCCATTGAAGCTAAAAAAGATGCAATGCT 707
Query 898 TCAATCTCTTTGGCAAATCAATGTTCTCGACATCGAATCCACGCT-ATCTCGTGTTTGCC 956
|||||| |||||||||||||||||| | ||||||||||| || || ||||||||| ||||
Sbjct 708 TCAATCCCTTTGGCAAATCAATGTTGTTGACATCGAATCAAC-CTTATCTCGTGTCTGCC 766
Query 957 AATCTGTGCTTAAAGATCCAAGTGTTTCGAAGGATGTTCTTCGAGCTCGTGCCATAGGAC 1016
|| | ||||||||||||||||||||||| |||||||||||||||||| | || | ||||
Sbjct 767 AAGCGGTGCTTAAAGATCCAAGTGTTTCAAAGGATGTTCTTCGAGCTAGAGCTAGAGGAT 826
Query 1017 TGAAGAAACTTGGAA-CGATCTTCCAGGGTGCTAAGAAGCCGTACACGAGAGGAAGCAGC 1075
||| ||| || |||| | || || |||||| ||||||| ||||| | |||| || ||||
Sbjct 827 TGAGGAAGCTCGGAAAC-ATTTTTCAGGGTTCTAAGAAACCGTATTCTAGAGAAAACAGC 885
Query 1076 TTGCGTCG-G--GAAGCC-A--CCACCGTGAAAATGGACACCGGAGGTTCTTCAAAG 1126
||||||| | |||| | ||||||||||| | ||||||||| ||| || |||
Sbjct 886 TTGCGTCATGAAGAAGAAGAAGCCACCGTGAAACTTCACACCGGAGATTCCTCGAAG 942
> Ahg918615 jgi|Araly1|918615|Al_scaffold_0734_1
Length=573
Score = 520 bits (281), Expect = 1e-146
Identities = 479/575 (83%), Gaps = 11/575 (2%)
Strand=Plus/Plus
Query 98 ATGGTGAAAGAGACTGAATACTACGAGATCTTAGGCGTCAAAACTGATGCTTCAGATGCT 157
|||||||| |||| ||| ||||| || || ||||||||||| | ||| || || | ||||
Sbjct 1 ATGGTGAAGGAGAGTGAGTACTATGACATATTAGGCGTCAAGATTGACGCGTCTGGTGCT 60
Query 158 GAGATTAAAAAGGCTTACTACT-TAAAAGCAAGGAAAGTTCATCCAGACAAGAACCCTGG 216
|||||||| |||||||| || | | ||||||||| ||||||||||||||||||||| |||
Sbjct 61 GAGATTAAGAAGGCTTATTA-TGTTAAAGCAAGGCAAGTTCATCCAGACAAGAACCATGG 119
Query 217 AGACCCTCAAGCTGCTAAAAACTTTCAGGTTTTAGGTGAGGCTTATCAGGTTCTAAGCAA 276
|| |||||||||||||||||||||||| | ||||||| ||||| || ||||| ||| |
Sbjct 120 TGATCCTCAAGCTGCTAAAAACTTTCAGATACTAGGTGAAGCTTACCAAGTTCTTAGCGA 179
Query 277 TCCGGATAAGCGAGCAGCTTATGACAAATATGGCAAAGAAGGGGTCCAACAGGATGCAAT 336
|||||| |||||| ||||||||||||||| ||| ||| ||||||| ||||||||||||||
Sbjct 180 TCCGGAGAAGCGAACAGCTTATGACAAATTTGGAAAACAAGGGGTTCAACAGGATGCAAT 239
Query 337 GGTTGATCCTGCAGCTGTATTTGGTATGCT-TTTCGGAAGCGAAG-TCTTTGAAGAATAC 394
|||||||||||||||||| ||||||||||| ||| || ||||| | ||||||| || |||
Sbjct 240 GGTTGATCCTGCAGCTGTGTTTGGTATGCTCTTT-GGTAGCGA-GCTCTTTGAGGAGTAC 297
Query 395 GTTGGCCAGCTTGCACTTGCTT-ATTTGGCATCTATCGAAGCTGACTTAGAATCACATGA 453
||||| || ||||||||||||| | | | | || ||||| ||||| |||||||| ||||
Sbjct 298 GTTGGGCAACTTGCACTTGCTTCAATAGCC-TCAATCGATGCTGAATTAGAATCTTATGA 356
Query 454 CCCTGAAATCAGAAAGCAAATGCTTCAAGACAAGATCAAAGCTCTTCAAAAGGAGAGGGA 513
||||| || ||||| || ||||||| || ||||||||||| | ||||| || || |
Sbjct 357 GCCTGAGATTAGAAAACAGATGCTTCGGGAAAAGATCAAAGCGATGCAAAACGATAGAGT 416
Query 514 AGACAAGCTCGCCGCTACATTGAAAAACAAACTTGAACCCTTTGTGGAAAGACAAACAGA 573
||||||||||| ||||||| |||||| |||||| ||||| || |||||| ||||||| ||
Sbjct 417 AGACAAGCTCGTCGCTACACTGAAAATCAAACTCGAACCATTCGTGGAAGGACAAACTGA 476
Query 574 TGAATTTATCGAA-TGGGCAAACGAAGAGGCAAAGCGGCTTTCTTCTGCCGGTTTTGGCG 632
||||||| | ||| ||||| | || ||||||||| ||||||||| | || |||||||| |
Sbjct 477 TGAATTTGT-GAACTGGGCCACCGCAGAGGCAAAACGGCTTTCTACAGCTGGTTTTGGTG 535
Query 633 AGGCAATGATGCATACTA-TTGGTTACATTTACAC 666
|||||||| | || || |||| |||||||||||
Sbjct 536 AGGCAATGCTTCACACCGCTTGGATACATTTACAC 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49521669183
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5