BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G21510.1 Length=1324 Score E Sequences producing significant alignments: (Bits) Value Ahg481016 jgi|Araly1|481016|fgenesh2_kg.4__76__AT2G21510.1 1803 0.0 Ahg490686 jgi|Araly1|490686|fgenesh2_kg.7__119__AT4G39150.1 854 0.0 Ahg918615 jgi|Araly1|918615|Al_scaffold_0734_1 520 1e-146 > Ahg481016 jgi|Araly1|481016|fgenesh2_kg.4__76__AT2G21510.1 Length=1152 Score = 1803 bits (976), Expect = 0.0 Identities = 1101/1160 (95%), Gaps = 13/1160 (1%) Strand=Plus/Plus Query 46 TAGAATCGAGAGATATT-GTTGCCCCCATTTACATTTCTGCACGATCATCATCATGGTGA 104 |||||||||||| | || ||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1 TAGAATCGAGAG-TTTTCGTTGCCCCCATTTACATTTCTTCACGATCATCATTATGGTGA 59 Query 105 AAGAGACTGAATACTACGAGATCTTAGGCGTCAAAACTGATGCTTCAGATGCTGAGATTA 164 | |||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 60 AGGAGAATGAGTACTACGAGATCTTAGGCGTCAAAACTGATGCTTCCGATGCTGAGATTA 119 Query 165 AAAAGGCTTACTACTTAAAAGCAAGGAAAGTTCATCCAGACAAGAACCCTGGAGACCCTC 224 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 120 AAAAGGCTTACTACTTAAAAGCAAGGAAAGTTCACCCAGACAAGAACCCTGGAGACCCTC 179 Query 225 AAGCTGCTAAAAACTTTCAGGTTTTAGGTGAGGCTTATCAGGTTCTAAGCAATCCGGATA 284 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 180 AAGCTGCTAAGAACTTTCAGGTTTTAGGTGAGGCTTATCAGGTTCTGAGCAATCCGGAGA 239 Query 285 AGCGAGCAGCTTATGACAAATATGGCAAAGAAGGGGTCCAACAGGATGCAATGGTTGATC 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 AGCGAGCAGCTTATGACAAATATGGCAAAGAAGGGGTCCAACAGGATGCAATGGTTGATC 299 Query 345 CTGCAGCTGTATTTGGTATGCTTTTCGGAAGCGAAGTCTTTGAAGAATACGTTGGCCAGC 404 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 300 CTGCAGCTGTATTTGGTATGCTTTTCGGAAGCGAAGTCTTTGAAGAATATGTTGGCCAGC 359 Query 405 TTGCACTTGCTTATTTGGCATCTATCGAAGCTGACTTAGAATCACATGACCCTGAAATCA 464 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 360 TTGCACTTGCTTATTTGGCATCAATCGAAGCTGACTTAGAATCACATGAGCCTGAAATCA 419 Query 465 GAAAGCAAATGCTTCAAGACAAGATCAAAGCTCTTCAAAAGGAGAGGGAAGACAAGCTCG 524 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 420 GAAAGCAAATGCTTCAAGACAAGATCAAAGCTCTACAAAAGGAGAGGGAAGACAAACTCG 479 Query 525 CCGCTACATTGAAAAACAAACTTGAACCCTTTGTGGAAAGACAAAC-AGATGAATTTATC 583 |||||||||||||||||||||||||||| ||||| ||| ||||||| | ||||||||||| Sbjct 480 CCGCTACATTGAAAAACAAACTTGAACCGTTTGTAGAAGGACAAACCA-ATGAATTTATC 538 Query 584 GAATGGGCAAACGAAGAGGCAAAGCGGCTTTCTTCTGCCGGTTTTGGCGAGGCAATGATG 643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 GAATGGGCAAACGAAGAGGCAAAGCGGCTTTCTTCTGCCGGTTTTGGCGAGGCAATGATG 598 Query 644 CATACTATTGGTTACATTTACACAAGAAAAGCTGCTAAAGAAATCGGGAAAGACAAGCGA 703 |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 599 CATACTCTTGGTTACATTTACACAAGAAAAGCTGCTAAAGAAATCGGTAAAGACAAGCGG 658 Query 704 TATATGAAAGTACCATTCTTAGCTGAATGGGTGCGTGACAAAGGCCACCATATGAAATCT 763 ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 659 TATATGAAAGTGCCGTTCTTAGCGGAATGGGTGCGTGACAAAGGCCACCATATGAAATCT 718 Query 764 CAAGTGATGGCTGCTTCTGGTGCGGTTTCGTTACTTCAGTTGCAGGATGAAGTAAACAAG 823 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 719 CAAGTGATGGCTGCTTCTGGTGCGGTTTCATTACTTCAGTTGCAGGATGAAGTGAACAAG 778 Query 824 TTGAATGAACACCAAGGAGAGAACAAAGAGGAACATATTCAGAAAGCTATTGAAGCTAAA 883 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 779 TTGAATGAACACCAAGGAGAGAACAAAGAGGAGCATATTCAGAAAGCCATTGAAGCTAAA 838 Query 884 ATGGATGCTTTGCTTCAATCTCTTTGGCAAATCAATGTTCTCGACATCGAATCCACGCTA 943 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 ATGGATGCTTTACTTCAATCTCTTTGGCAAATCAATGTTCTCGACATCGAATCCACGCTA 898 Query 944 TCTCGTGTTTGCCAATCTGTGCTTAAAGATCCAAGTGTTTCGAAGGATGTTCTTCGAGCT 1003 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 899 TCTCGTGTTTGCCAATCTGTTCTTAAAGATCCAAGTGTTTCCAAGGATGTTCTTCGAGCT 958 Query 1004 CGTGCCATAGGACTGAAGAAACTTGGAACGATCTTCCAGGGTGCTAAGAAGCCGTACACG 1063 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 959 CGTGCCATAGGACTGAAGAAACTTGGAACGATCTTCCAGGGTGCCAAGAAGCCGTACACG 1018 Query 1064 AGAGGAAGCAGCTTGCGTCGGGAAGCCACCACCGTGAAAATGGACACCGGAGGTTCTTCA 1123 |||||||||||||||||||| ||| || | | |||||| ||||||| |||||||||||| Sbjct 1019 AGAGGAAGCAGCTTGCGTCGCGAA-CC-CG-CTGTGAAAGTGGACACGGGAGGTTCTTCA 1075 Query 1124 AAGGCGACGTCTTGAAACTCCGGA--ACTTAAAATGCTGT-TTCTTTTATTGGTTGAAGT 1180 |||||||||||||||||||||| | || || | || |||||||||||| |||| | Sbjct 1076 AAGGCGACGTCTTGAAACTCCG-ATCACCGGAA-T-CTAAATTCTTTTATTGGCTGAATT 1132 Query 1181 TGGATTTGTCCTTCGTTTTT 1200 ||||||||||||| |||||| Sbjct 1133 TGGATTTGTCCTTTGTTTTT 1152 > Ahg490686 jgi|Araly1|490686|fgenesh2_kg.7__119__AT4G39150.1 Length=1060 Score = 854 bits (462), Expect = 0.0 Identities = 797/957 (83%), Gaps = 30/957 (3%) Strand=Plus/Plus Query 185 GCAAGGAAAGTTCATCCAGACAAGAACCCTGGAGACCCTCAAGCTGCTAAAAACTTTCAG 244 |||||| ||||||||||||||||||||| ||| || |||||||||||||||||||||||| Sbjct 1 GCAAGGCAAGTTCATCCAGACAAGAACCATGGTGATCCTCAAGCTGCTAAAAACTTTCAG 60 Query 245 GTTTTAGGTGAGGCTTATCAGGTTCTAAGCAATCCGGATAAGCGAGCAGCTTATGACAAA 304 | ||||||| ||||| || ||||| ||| ||||||| |||||| |||||||||||||| Sbjct 61 ATACTAGGTGAAGCTTACCAAGTTCTTAGCGATCCGGAGAAGCGAACAGCTTATGACAAA 120 Query 305 TATGGCAAAGAAGGGGTCCAACAGGATGCAATGGTTGATCCTGCAGCTGTATTTGGTATG 364 | ||| ||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 121 TTTGGAAAACAAGGGGTTCAACAGGATGCAATGGTTGATCCTGCAGCTGTGTTTGGTATG 180 Query 365 CT-TTTCGGAAGCGAAG-TCTTTGAAGAATACGTTGGCCAGCTTGCACTTGCTT-ATTTG 421 || ||| || ||||| | ||||||| || |||||||| || ||||||||||||| | | | Sbjct 181 CTCTTT-GGTAGCGA-GCTCTTTGAGGAGTACGTTGGGCAACTTGCACTTGCTTCAATAG 238 Query 422 GCATCTATCGAAGCTGACTTAGAATCACATGACCCTGAAATCAGAAAGCAAATGCTTCAA 481 | || ||||| ||||| |||||||| |||| ||||| || ||||| || ||||||| Sbjct 239 CC-TCAATCGATGCTGAATTAGAATCTTATGAGCCTGAGATTAGAAAACAGATGCTTCGG 297 Query 482 GACAAGATCAAAGCTCTTCAAAAGGAGAGGGAAGACAAGCTCGCCGCTACATTGAAAAAC 541 || ||||||||||| | ||||| || || | ||||||||||| ||||||| |||||| | Sbjct 298 GAAAAGATCAAAGCGATGCAAAACGATAGAGTAGACAAGCTCGTCGCTACACTGAAAATC 357 Query 542 AAACTTGAACCCTTTGTGGAAAGACAAACAGATGAATTTATCGAA-TGGGCAAACGAAGA 600 ||||| ||||| || |||||| ||||||| ||||||||| | ||| ||||| | || ||| Sbjct 358 AAACTCGAACCATTCGTGGAAGGACAAACTGATGAATTTGT-GAACTGGGCCACCGCAGA 416 Query 601 GGCAAAGCGGCTTTCTTCTGCCGGTTTTGGCGAGGCAATGATGCATACTATTGGTTACAT 660 |||||| ||||||||| | || |||||||| ||||||||| | || || |||| ||||| Sbjct 417 GGCAAAACGGCTTTCTACAGCTGGTTTTGGTGAGGCAATGCTTCACACCGTTGGATACAT 476 Query 661 TTACACAAGAAAAGCTGCTAAAGAAATCGGGAAAG-ACAAGCGATATATGAAAGTACCAT 719 |||||| ||||||||| |||||||| |||| |||| | || || || ||||||||||| | Sbjct 477 TTACACTAGAAAAGCTTCTAAAGAACTCGG-AAAGGATAAACGTTACATGAAAGTACCTT 535 Query 720 TCTTAGCTGAATGGGTGCGTGACAAAGGCCACCATA-TGAAATCTCAAGTGATGGCTGCT 778 | ||||| |||||||| ||||||||||||||||| | | ||||||||||||||||||||| Sbjct 536 TTTTAGCCGAATGGGTTCGTGACAAAGGCCACCA-AGTAAAATCTCAAGTGATGGCTGCT 594 Query 779 TCTGGTGCGGTTTCGTTACTTCAGTTGCAGGATGAAGTAAACAAGTTGAATGAACACCAA 838 || |||||||| ||||| |||||||||||||||||| | | |||| ||||| || Sbjct 595 TCGGGTGCGGTCTCGTTGCTTCAGTTGCAGGATGAAATGAGCAAGCTGAAT---CAT--- 648 Query 839 GGAGAGAACAAAGAGGA-ACATATTCAGAAAGCTATTGAAGCTAAAATGGATGCTTTGCT 897 |||||||||||||| || | ||||||||||||| ||||||||||||| ||||| |||| Sbjct 649 GGAGAGAACAAAGAAGAGA-ATATTCAGAAAGCCATTGAAGCTAAAAAAGATGCAATGCT 707 Query 898 TCAATCTCTTTGGCAAATCAATGTTCTCGACATCGAATCCACGCT-ATCTCGTGTTTGCC 956 |||||| |||||||||||||||||| | ||||||||||| || || ||||||||| |||| Sbjct 708 TCAATCCCTTTGGCAAATCAATGTTGTTGACATCGAATCAAC-CTTATCTCGTGTCTGCC 766 Query 957 AATCTGTGCTTAAAGATCCAAGTGTTTCGAAGGATGTTCTTCGAGCTCGTGCCATAGGAC 1016 || | ||||||||||||||||||||||| |||||||||||||||||| | || | |||| Sbjct 767 AAGCGGTGCTTAAAGATCCAAGTGTTTCAAAGGATGTTCTTCGAGCTAGAGCTAGAGGAT 826 Query 1017 TGAAGAAACTTGGAA-CGATCTTCCAGGGTGCTAAGAAGCCGTACACGAGAGGAAGCAGC 1075 ||| ||| || |||| | || || |||||| ||||||| ||||| | |||| || |||| Sbjct 827 TGAGGAAGCTCGGAAAC-ATTTTTCAGGGTTCTAAGAAACCGTATTCTAGAGAAAACAGC 885 Query 1076 TTGCGTCG-G--GAAGCC-A--CCACCGTGAAAATGGACACCGGAGGTTCTTCAAAG 1126 ||||||| | |||| | ||||||||||| | ||||||||| ||| || ||| Sbjct 886 TTGCGTCATGAAGAAGAAGAAGCCACCGTGAAACTTCACACCGGAGATTCCTCGAAG 942 > Ahg918615 jgi|Araly1|918615|Al_scaffold_0734_1 Length=573 Score = 520 bits (281), Expect = 1e-146 Identities = 479/575 (83%), Gaps = 11/575 (2%) Strand=Plus/Plus Query 98 ATGGTGAAAGAGACTGAATACTACGAGATCTTAGGCGTCAAAACTGATGCTTCAGATGCT 157 |||||||| |||| ||| ||||| || || ||||||||||| | ||| || || | |||| Sbjct 1 ATGGTGAAGGAGAGTGAGTACTATGACATATTAGGCGTCAAGATTGACGCGTCTGGTGCT 60 Query 158 GAGATTAAAAAGGCTTACTACT-TAAAAGCAAGGAAAGTTCATCCAGACAAGAACCCTGG 216 |||||||| |||||||| || | | ||||||||| ||||||||||||||||||||| ||| Sbjct 61 GAGATTAAGAAGGCTTATTA-TGTTAAAGCAAGGCAAGTTCATCCAGACAAGAACCATGG 119 Query 217 AGACCCTCAAGCTGCTAAAAACTTTCAGGTTTTAGGTGAGGCTTATCAGGTTCTAAGCAA 276 || |||||||||||||||||||||||| | ||||||| ||||| || ||||| ||| | Sbjct 120 TGATCCTCAAGCTGCTAAAAACTTTCAGATACTAGGTGAAGCTTACCAAGTTCTTAGCGA 179 Query 277 TCCGGATAAGCGAGCAGCTTATGACAAATATGGCAAAGAAGGGGTCCAACAGGATGCAAT 336 |||||| |||||| ||||||||||||||| ||| ||| ||||||| |||||||||||||| Sbjct 180 TCCGGAGAAGCGAACAGCTTATGACAAATTTGGAAAACAAGGGGTTCAACAGGATGCAAT 239 Query 337 GGTTGATCCTGCAGCTGTATTTGGTATGCT-TTTCGGAAGCGAAG-TCTTTGAAGAATAC 394 |||||||||||||||||| ||||||||||| ||| || ||||| | ||||||| || ||| Sbjct 240 GGTTGATCCTGCAGCTGTGTTTGGTATGCTCTTT-GGTAGCGA-GCTCTTTGAGGAGTAC 297 Query 395 GTTGGCCAGCTTGCACTTGCTT-ATTTGGCATCTATCGAAGCTGACTTAGAATCACATGA 453 ||||| || ||||||||||||| | | | | || ||||| ||||| |||||||| |||| Sbjct 298 GTTGGGCAACTTGCACTTGCTTCAATAGCC-TCAATCGATGCTGAATTAGAATCTTATGA 356 Query 454 CCCTGAAATCAGAAAGCAAATGCTTCAAGACAAGATCAAAGCTCTTCAAAAGGAGAGGGA 513 ||||| || ||||| || ||||||| || ||||||||||| | ||||| || || | Sbjct 357 GCCTGAGATTAGAAAACAGATGCTTCGGGAAAAGATCAAAGCGATGCAAAACGATAGAGT 416 Query 514 AGACAAGCTCGCCGCTACATTGAAAAACAAACTTGAACCCTTTGTGGAAAGACAAACAGA 573 ||||||||||| ||||||| |||||| |||||| ||||| || |||||| ||||||| || Sbjct 417 AGACAAGCTCGTCGCTACACTGAAAATCAAACTCGAACCATTCGTGGAAGGACAAACTGA 476 Query 574 TGAATTTATCGAA-TGGGCAAACGAAGAGGCAAAGCGGCTTTCTTCTGCCGGTTTTGGCG 632 ||||||| | ||| ||||| | || ||||||||| ||||||||| | || |||||||| | Sbjct 477 TGAATTTGT-GAACTGGGCCACCGCAGAGGCAAAACGGCTTTCTACAGCTGGTTTTGGTG 535 Query 633 AGGCAATGATGCATACTA-TTGGTTACATTTACAC 666 |||||||| | || || |||| ||||||||||| Sbjct 536 AGGCAATGCTTCACACCGCTTGGATACATTTACAC 570 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49521669183 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5