BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21520.2
Length=2325
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899419 jgi|Araly1|899419|Al_scaffold_0004_69 2654 0.0
Ahg943887 jgi|Araly1|943887|scaffold_700116.1 1441 0.0
> Ahg899419 jgi|Araly1|899419|Al_scaffold_0004_69
Length=1794
Score = 2654 bits (1437), Expect = 0.0
Identities = 1637/1732 (95%), Gaps = 20/1732 (1%)
Strand=Plus/Plus
Query 351 GAGCGGAAGAAGAAAAAGTGATGGTCGAGTGAGTTCTGTATCCATTGAGGATGTGAGGGA 410
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||
Sbjct 63 GAGCGGAAGAAGAAAAAGTGACGGTCGAGTGAGTTCTGTCTCCATTGAGGATGTGCGGGA 122
Query 411 TGTCGAGGAGCTACAAGCTGTTGATGCGTTTCGACAGTCGTTGTTAATGGACGAGTTGCT 470
||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 123 TGTCGAGGAGCTACAGGCTGTTGACGCGTTTCGACAATCATTGTTAATGGACGAGTTGCT 182
Query 471 TCCTGATAGACACGATGATTATCATATGATGTTGAGGTTCTTGAAAGCGAGGAAATTTGA 530
||| || ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 183 TCCGGAGAGACACGATGACTATCACATGATGTTGAGGTTCTTGAAAGCAAGGAAATTTGA 242
Query 531 TGTTGAGAAAGCTAAACAAATGTGGGCTGATATGATTCAATGGAGGAAAGAGTTTGGTAC 590
||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 243 CATTGAGAAAGCTAAGCAGATGTGGGCTGATATGATTCAATGGAGGAAGGAGTTTGGTAC 302
Query 591 TGACACTATTATTCAGGATTTTGATTTCGAAGAGATTAATGAAGTTTTGAAACATTACCC 650
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 303 TGACACTATTATTCAGGATTTTGATTTCGAAGAGATTAATGAAGTTTTGAAATATTACCC 362
Query 651 ACAATGTTATCACGGTGTTGACAAAGAAGGTAGACCTATTTACATTGAAAGGCTAGGGAA 710
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 363 GCAATGTTATCACGGTGTTGACAAAGAAGGCAGACCTATTTACATTGAAAGGCTAGGGAA 422
Query 711 AGTTGATCCTAACAGACTCATGCAAGTTACAAGCATGGATCGATATGTAAGATATCATGT 770
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 423 AGTTGATCCTAACAGACTCATGCAAGTTACAAGCATGGATCGATACGTAAGATATCATGT 482
Query 771 AAAGGAGTTTGAGAGGAGCTTTATGATCAAGTTTCCTTCCTGCACTATTTCTGCAAAGAG 830
||||||||| || |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 483 AAAGGAGTTCGAAAGGAGCTTTATGATCAAGTTTCCTTCCTGCACAATCGCTGCAAAGAG 542
Query 831 GCATATTGATTCAAGTACAACTATTCTTGATGTTCAAGGAGTGGGATTGAAAAACTTTAA 890
|||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 543 GCATATCGATTCGAGTACAACTATTCTTGATGTTCAGGGAGTGGGATTGAAAAACTTTAC 602
Query 891 CAAGTCTGCTCGAGATCTTATCACACGATTACAAAAGATTGATGGAGACAATTATCCTGA 950
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 603 CAAGTCTGCTCGGGATCTTATCACGCGATTACAAAAGATTGATGGAGACAATTATCCTGA 662
Query 951 GACTCTCCACCAAATGTTTATTATCAATGCAGGGCCTGGATTTAGGCTACTCTGGAACAC 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GACTCTCCACCAAATGTTTATTATCAATGCAGGGCCTGGATTTAGGCTACTCTGGAACAC 722
Query 1011 TGTCAAGAGCTTTCTTGACCCTAAGACATCTGCTAAAATTCATGTACTCGGATACAAGTA 1070
||| ||||||||||| ||||| || ||||||||||| |||||||| ||||||||||||||
Sbjct 723 TGTGAAGAGCTTTCTAGACCCAAAAACATCTGCTAAGATTCATGTCCTCGGATACAAGTA 782
Query 1071 TCTAAGCAAATTGCTTGAAGTCATTGATGTCAACGAGTTGCCTGAGTTCTTGGGAGGTGC 1130
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 783 TCTGAGCAAATTGCTTGAAGTCATTGATGTCAATGAGTTGCCTGAGTTCTTGGGAGGTGC 842
Query 1131 ATGTACTTGCGCAGATCAAGGCGGTTGCATGCTTTCTGACAAGGGACCTTGGAAAAACCC 1190
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 ATGTACTTGCTCAGATCAAGGCGGTTGCATGCTTTCTGACAAGGGACCTTGGAAAAACCC 902
Query 1191 GGAAATTGTGAAGATGGTGCTTCATGGAGGAGCACATCGAGCGAGGCAGGTGGTGAAAGT 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GGAAATTGTGAAGATGGTGCTTCATGGAGGAGCACATCGAGCGAGGCAGGTGGTGAAAGT 962
Query 1251 GTTGAACAGCGAAGGGAAAGTCATTGCTTATGCAAAACCTTCATATACATGGATAAAGGG 1310
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 963 TTTGAACAGCGAAGGGAAAGTCATTGCTTATGCAAAACCTTCATATCCATGGATAAAGGG 1022
Query 1311 AAGTGACACATCCACTGCAGAGTCAGGATCTGACGCTGAAGATATCGGTTCTCCGAAGGC 1370
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1023 AAGTGACACTTCCACTGCAGAGTCAGGATCTGACGCTGAAGATATCGGTTCTCCAAAGGC 1082
Query 1371 TATAAAGAGTTTCTCTCATCTCCGCTTGACACCTGTTCGTGAGGAGGCAAAGATAGCTGG 1430
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 TATAATGAGTTTCTCTCATCTCCGCTTGACACCTGTTCGTGAGGAGGCAAAGATAGCTGG 1142
Query 1431 TGAAACAAGCTTGGCTGGTAGTTTTCCGGGTTATGACGAGTATGTACCTATGGTGGACAA 1490
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 1143 TGAAACAAGCTTGGCTGGTAGTTTTCCGGGTTATGATGAGTATGTACCAATGGTTGACAA 1202
Query 1491 AGCCGTTGACGCCACCTGGAAGGTGAAACCCGCCATCCAGAGAGTTGCCTCAAGAGGAGC 1550
|||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1203 AGCCGTCGACGCAACCTGGAAGGTGAAACCCGCCATTCAGAGAGTGGCCTCAAGAGGAGC 1262
Query 1551 TTTAATGTCTCCCACCGTTCCAAAAGATCATGAAGGCATCAAGGCTCGAGTCCTAGTAAT 1610
|||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1263 TTTAATGTCTCCCACCATTCCAAAGGATCCTGAAGGCATCAAGGCTCGAGTCCTAGTAAT 1322
Query 1611 GTTCATGGCATTCTTGATGGCGGTTTTCACATTCTTCCGCACTGTA----AC------A- 1659
|||||||||||||||||||||||||||||||||||| ||||| ||| || |
Sbjct 1323 GTTCATGGCATTCTTGATGGCGGTTTTCACATTCTTTCGCACAGTATCTTACCGTGTGAC 1382
Query 1660 -AAGAAACTTCCAGCGACTACTACTTCTTCCCCAGC-AGAAACCCAAGGAAACGCAATAG 1717
||||| |||||||||||||||||||| ||| | | |||||||||||||||||||| ||
Sbjct 1383 CAAGAATCTTCCAGCGACTACTACTTC--CCC-A-CTAGAAACCCAAGGAAACGCAACAG 1438
Query 1718 AACTTGGTTCTAACGGTGAAGGAGTTAAAGAGGAGTGTCGTCCTCCTTCTCCTGTACCAG 1777
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1439 AACTTGGTTCTAACGGTGAAGGAGTTAAAGAGGAGTGTCGTCCTCCTTCTCCAGTATCAG 1498
Query 1778 ACCTCACGGAAACTGATCTACTAAACTGTGTGACGAAGAAACTGACAGAGCTGGAAGGTA 1837
||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1499 ACCTCACGGAAACCGATCTCCTAAATTGTGTGACGAAGAAACTGACAGAGCTGGAAGGTA 1558
Query 1838 AAATCGGAACGCTCCAATCAAAGCCAAATGAGATGCCATACGAGAAAGAAGAACTGTTAA 1897
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1559 AAATCGGAACTCTCCAATCAAAGCCGAATGAGATGCCATACGAGAAAGAAGAACTGTTAA 1618
Query 1898 ACGCAGCCGTCTGCAGAGTAGACGCACTTGAAGCAGAGCTCATAGCTACTAAAAAGGCCC 1957
||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1619 ACGCAGCGGTTTGCAGAGTAGATGCACTTGAAGCAGAGCTCATAGCTACTAAAAAGGCAC 1678
Query 1958 TTTACGAAGCTTTGATGAGACAGGAAGAGTTACTTGCTTACATTGATCGTCaagaagaag 2017
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1679 TTTACGAAGCTTTGATGAGACAAGAAGAGTTACTTGCTTACATTGATCGTCAAGAAGAAG 1738
Query 2018 ctcagttccagaagatgaagaagaagaagaa---gaaACATCTCTTTTGCTT 2066
|||| ||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 1739 CTCAATTCCAAAAGATGAAGAAGAAGAAAAACAAGAAACATCTCTTTTGCTT 1790
> Ahg943887 jgi|Araly1|943887|scaffold_700116.1
Length=1890
Score = 1441 bits (780), Expect = 0.0
Identities = 1255/1480 (85%), Gaps = 49/1480 (3%)
Strand=Plus/Plus
Query 203 GTTTTGAGGGATTCTTGAGCAGTGATGAGAAAAAGGAAAGAAAGTCAGATTTTGAGAATT 262
||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 59 GTTTTGAGGGAATATTGAGCAGTGATGAGAAAAAGGAAAGAAAGTCTGATTTTGAGAACT 118
Query 263 CAGAGGATGAGAGGAGAACAAGAATCGGTTCCTTGAAAAAGAAAGCCATTAATGCCTCTA 322
| || |||||||||||||||||||||||||| ||||| |||||||| || ||||| ||||
Sbjct 119 CGGAAGATGAGAGGAGAACAAGAATCGGTTCTTTGAAGAAGAAAGCAATCAATGCATCTA 178
Query 323 CTAAGTTCAAGCATTCTCTTAAGAAAAAGAGCGGAAGAAGAAAAAGTGATGGTCGAGTGA 382
| ||||||||||||||||| ||||||||||| ||||| ||| |||||| ||| ||||
Sbjct 179 CCAAGTTCAAGCATTCTCTCAAGAAAAAGAG---AAGAA-AAA--GTGATGTTCGGGTGA 232
Query 383 GTTCTGTATCCATTGAGGATGTGAGGGATGTCGAGGAGCTACAAGCTGTTGATGCGTTTC 442
||||||| ||||| || ||||| | |||||||||||||| ||||| ||||||| ||||
Sbjct 233 GTTCTGTCTCCATCGAAGATGTTCGTGATGTCGAGGAGCTTCAAGCGGTTGATGAGTTTA 292
Query 443 GACA-GTCGTTGTTAATGGACGAGTTGCTTCCTGATAGACACGATGATTATCATATGATG 501
|||| | | ||| ||||||||||||||||||| ||| ||||||||| ||||| ||||||
Sbjct 293 GACAAG-CATTGGTAATGGACGAGTTGCTTCCCCATAAACACGATGACTATCACATGATG 351
Query 502 TTGAGGTTCTTGAAAGCGAGGAAATTTGATGTTGAGAAAGCTAAACAAATGTGGGCTGAT 561
||||||||||||| || |||||||| || ||||||||||||| || ||||||||||||
Sbjct 352 CTGAGGTTCTTGAAGGCTAGGAAATTCGACATTGAGAAAGCTAAGCACATGTGGGCTGAT 411
Query 562 ATGATTCAATGGAGGAAAGAGTTTGGTACTGACACTATTATTCAGGATTTTGA-TTTCGA 620
||||| || |||||||| || |||||||| ||||||||||||||||||||| | ||| ||
Sbjct 412 ATGATCCAGTGGAGGAAGGAATTTGGTACCGACACTATTATTCAGGATTTTCAGTTT-GA 470
Query 621 AGAGATTAATGAAGTTTTGAAACATTACCCACAATGTTATCACGGTGTTGACAAAGAAGG 680
||||||| |||| ||| ||||| ||||||| || |||| ||| | ||||| ||||||||
Sbjct 471 AGAGATTGATGATGTTCTGAAATATTACCCGCACGGTTACCACAGCGTTGATAAAGAAGG 530
Query 681 TAGACCTATTTACATTGAAAGGCTAGGGAAAGTTGATCCTAACAGACTCATGCAAGTTAC 740
|| ||| | || ||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 531 CAGGCCTGTGTATATTGAAAGGCTAGGGAAAGTTGATCCTAACAAACTGATGCAAGTTAC 590
Query 741 AAGCATGGATCGATATGTAAGATATCATGTAAAGGAGTTTGAGAGGAGCTTTATGATCAA 800
| | | ||||||||| ||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 591 TACCCTTGATCGATATATAAGATATCATGTTAAGGAGTTCGAGAGGAGTTTTATGATCAA 650
Query 801 GTTTCCTTCCTGCACTATTTCTGCAAAGAGGCATATTGATTCAAGTACAACTATTCTTG- 859
||||||| ||||||| ||| |||| |||| | ||||||||||||| || |||||| |||
Sbjct 651 GTTTCCTGCCTGCACAATTGCTGCCAAGAAGTATATTGATTCAAGCACCACTATT-TTGG 709
Query 860 ATGTTCAAGGAGTGGGATTGAAAAACTTTAACAA-GTCTGCTCGAGATCTTATCACACGA 918
| || ||||||||||| |||| ||||| | ||| ||||||||| || ||||| |||||
Sbjct 710 ACGTCCAAGGAGTGGGGCTGAAGAACTTCA-CAAAGTCTGCTCGTGAGCTTATTACACGG 768
Query 919 TTACAAAAGATTGATGGAGACAATTATCCTGAGACTCTCCACCAAATGTTTATTATCAAT 978
|| || ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 769 TTGCAGAAGATTGATGGGGACAATTATCCTGAGACCCTCCACCAAATGTTTATCATCAAT 828
Query 979 GCAGGGCCTGGATTTAGGCTACTCTGGAACACTGTCAAGAGCTTTCTTGACCCTAAGACA 1038
|||||||| ||||| | || || |||| |||||| || |||||||| ||||| || |||
Sbjct 829 GCAGGGCCAGGATTCCGCCTGCTTTGGAGCACTGTGAAAAGCTTTCTAGACCCCAAAACA 888
Query 1039 TCTGCTAAAATTCATGTACTCGGATACAAGTATCTA-AGC-AAATTGCTTGAAGTCATTG 1096
|| |||| ||||||||||||||||||||||||| | | | ||||||||||| || ||||
Sbjct 889 ACTTCTAAGATTCATGTACTCGGATACAAGTATC-AGA-CTAAATTGCTTGAGGTTATTG 946
Query 1097 ATGTCAA-CGAGTTGCCTGAGTTCTTGGGAGGTGCATGTACTTGCGCAGATCAAGGCGGT 1155
|| || | |||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 947 AT-TCCAGCGAGTTGCCTGAATTCTTGGGAGGTGCATGTACTTGCGCAGATCAGGGTGGT 1005
Query 1156 TGCATGCTTTCTGACAA-GGGACCTTGGAAAAACCCGGAAATTGTGAAGATGGTGCTTCA 1214
|| ||||||||||| || ||| ||||||||||| || || ||||| |||||||| |||||
Sbjct 1006 TGTATGCTTTCTGATAAAGGG-CCTTGGAAAAATCCAGAGATTGTAAAGATGGTACTTCA 1064
Query 1215 TGGAGGAGCACATCGAGCGAGGCAGGTGGTGAAAGTG-TTGAACAGCGAAGGGAAAGTCA 1273
||| ||||| || || |||| ||||||||||||||| || |||||||| ||||||||||
Sbjct 1065 TGGGGGAGCTCACCGTGCGAAGCAGGTGGTGAAAGTTCTT-AACAGCGAGGGGAAAGTCA 1123
Query 1274 TTGCTTATGCAAAACCTTCATATACATGGATAAAGGGAAGTGACACATCCACTGCAGAGT 1333
|||||||||| || || || ||| |||||||||| |||||||||||||| |||||||| |
Sbjct 1124 TTGCTTATGCTAAGCCGTCTTATCCATGGATAAAAGGAAGTGACACATCAACTGCAGAAT 1183
Query 1334 CAGGATCTGACGCTGAAGATATCG--GT-TCTCCGAAGGCTA-TAAAGAGTT-T-CTCTC 1387
|||| ||||| ||||||||||||| || ||||| || || | ||||||||| | | | |
Sbjct 1184 CAGGTTCTGAAGCTGAAGATATCGTTGTGTCTCCAAAAGC-AGTAAAGAGTTATAC-C-C 1240
Query 1388 ATCTCCGCTTGACACCTGTTCGTGAGGAGGCAAAGATAG-CT--GGTGAAACAAGCTTGG 1444
||||||||||||| ||||||||||| |||| |||| ||| || |||||||| || || |
Sbjct 1241 ATCTCCGCTTGACCCCTGTTCGTGAAGAGGTAAAGGTAGGCTCTGGTGAAACGAGTTTTG 1300
Query 1445 CTGGTAGTTTTCCGGGTTATGACGAGTATGTACCTATGGTGGACAAAGCCGTTGACGCCA 1504
| ||||||||| | |||||||| |||||||| || ||||| |||||||| ||||||||||
Sbjct 1301 CCGGTAGTTTTGCAGGTTATGATGAGTATGTTCCAATGGTTGACAAAGCTGTTGACGCCA 1360
Query 1505 CCTGGAAGGTGAAACCC---GCCATCCAGAGAGTTGCCT-C-AAGAGGAGCTT-TAATGT 1558
|||||||||| |||||| |||||| | || | | ||| | || ||||||| || ||
Sbjct 1361 CCTGGAAGGTTAAACCCACCGCCATCAACAGGGCT-CCTTCTAA-AGGAGCTCATA-TGC 1417
Query 1559 CTCCCACCGTTCCAAAAGATCATGAAGGCATCAAG-GCTCGAGTCCTAGTAATGTTCATG 1617
|||| | || ||||| ||||||||| || ||| | ||||||||||||||||| ||||||
Sbjct 1418 CTCCAAATGTCCCAAAGGATCATGAAAGCTTCA-GTGCTCGAGTCCTAGTAATTTTCATG 1476
Query 1618 GCATTCT-TGATGGCGGTTTTCACATTCTTCCGCACTGTA 1656
|| || | |||||||| || |||||||||||||||| |||
Sbjct 1477 GCTTT-TGTGATGGCGATTCTCACATTCTTCCGCACAGTA 1515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87569473255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5