BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21530.1
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481019 jgi|Araly1|481019|fgenesh2_kg.4__79__AT2G21530.1 944 0.0
> Ahg481019 jgi|Araly1|481019|fgenesh2_kg.4__79__AT2G21530.1
Length=721
Score = 944 bits (511), Expect = 0.0
Identities = 631/687 (92%), Gaps = 15/687 (2%)
Strand=Plus/Plus
Query 1 ACTTCATATTTTGTTTTTGTAAGATCAATCAGTTTTTATGAAGAGAAAATGGAGATAACA 60
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTTCATCTTTTGTTTTTCTAAGATCAATCAGTTTTTATGAAGAGAAAATGGAGATAACA 60
Query 61 ATATCCCAATTGTGCTCTCGAGTTAAGTTTtcatcatcatcatcatcatcatcaCTTTTC 120
||||| ||||||||||||||||||||| | | | ||||||||||| ||
Sbjct 61 ATATCTCAATTGTGCTCTCGAGTTAAG---------T--T--T--TCATCATCACTGTTG 105
Query 121 TGTTTCTATGGAAACAGTAATAGAAACAACCTAAATGGAGCTGTTTCAGTAAACTGCTTG 180
||||| || |||||||||| || |||||||||||||||||||||||||| || | ||||
Sbjct 106 TGTTTAAATAGAAACAGTAAGAGGAACAACCTAAATGGAGCTGTTTCAGTGAATTACTTG 165
Query 181 AGAGAGAATGAGCAGATCAGTAATATTAGCTTCATTGCGAAGAAACCAAGAAGTCATGCA 240
| ||||| ||| |||||||||||||||||||||| |||||| ||||| |||||||||||
Sbjct 166 AAAGAGATTGATCAGATCAGTAATATTAGCTTCACTGCGAAAAAACCGAGAAGTCATGCG 225
Query 241 CCGGTGGTGAGAACAACACGCGCCTCCTTGGATGAGAATCAATCCCCAACTTCCGGAGGA 300
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 226 CCGGTGGTGAGAAAAACACGCGCCTCCTTGGATGAGAATCAGTCCCCAACTTCCGGAGGA 285
Query 301 GAACGGTGGCTTCTCAAACCAGTTGGCGATGGAGACACAAGACACATTGGTTACAAAGTG 360
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 286 GAACGGTGGCTTCTCCAACCAGTTGGTGATGGAGACACAAGACACATTGGTTACAAAGTG 345
Query 361 GCAATGCCTGCTCCTTTTGAGATCTCCTCTGGCCAAGTTACCATCGGACGGCTACCGGAA 420
|| |||||||||||||| |||||| |||| || |||||||||||||||||||||||||||
Sbjct 346 GCGATGCCTGCTCCTTTCGAGATCACCTCGGGACAAGTTACCATCGGACGGCTACCGGAA 405
Query 421 AAGGCTGACGTCGTGATTCCTGTTGCCACCGTGTCAGGAGTCCATGCGACAATCAATACG 480
|||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 406 AAGGCTGATGTCGTAATTCCTGTGGCCACCGTGTCGGGAGTCCATGCGACAATCAATACC 465
Query 481 AATGAAAAGAACCTTCTTGTGACGGATATGAACAGCACCAACGGTACATTCATCGAAGAC 540
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 466 AATGAAAACAACCTTCTTGTGACGGATATGAACAGCACCAACGGTACATTTATCGAAGAC 525
Query 541 AAACGTCTAATTCCTGGTGTTGCTGCTCCTGCCTTTCCCGGAACACGAATCACCTTTGGA 600
|||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 526 AAACGTCTAATTCCTGGTGTCGCCGCTCCTGCCTTTCCCGGAACCCGAATCACCTTTGGA 585
Query 601 GATACAAATCTAGCAATTTTCCGTGTTTTCAAGCTCCAAGATAGTGAAGAATCCATAGAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 586 GATACAAATCTAGCAATTTTCCGTGTTTTCAAGCTCCAAGATAGTGAAGAATCCACAGAG 645
Query 661 AAACCAACTACAGAGTAACACAAAACC 687
|||||||| ||||||||||||||||||
Sbjct 646 AAACCAACCACAGAGTAACACAAAACC 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29697752343
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5