BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21550.1
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899422 jgi|Araly1|899422|Al_scaffold_0004_72 2047 0.0
> Ahg899422 jgi|Araly1|899422|Al_scaffold_0004_72
Length=1473
Score = 2047 bits (1108), Expect = 0.0
Identities = 1354/1474 (92%), Gaps = 11/1474 (1%)
Strand=Plus/Plus
Query 8 CTACTGGTGAAACTATATGTAACAATGGCCAAAGCGCAGTTTCAGTAACAAGGAGGAGGA 67
|||||||||| | || | || ||||||||||||| | |||||||| || | |||||||
Sbjct 5 CTACTGGTGAGGCAATGTTTATCAATGGCCAAAGCACGGTTTCAGTTAC-A--AGGAGGA 61
Query 68 GTTACCAAGTTGTAATAGCGGCGACAAGAGACATGGGTCTTGGTATGGACATGAAACTTC 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GTTACCAAGTTGTAATAGCGGCGACAAGAGACATGGGTCTTGGTATGGACATGAAACTTC 121
Query 128 CTTGGGATCTACCTTCAGAGTATCAGTTTTTCCAAGATGTTACAACTAGGACATCCGATC 187
|||||||||||||| |||| | |||||||||||| |||||||||||||||||| ||||||
Sbjct 122 CTTGGGATCTACCTACAGATTCTCAGTTTTTCCACGATGTTACAACTAGGACAACCGATC 181
Query 188 CCACGAAGAGGAACGCGACTATAATGGGAAGAAAATCATGGGAATCTACTCCTCTAGAGA 247
|||||| |||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 182 CCACGAGGAGGAATGCGACTATAATGGGAAGAAAATCATGGGAATCGACTCCTCTCGAGA 241
Query 248 TTCGTCCTCTTCCTGGTCGGCTCAATATTGTCTTGACAAAGTCTAGCTGCCACAACATTG 307
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 242 TTCGTCCCCTTCCTGGTCGACTTAATATTGTCTTGACAAAGTCTAGCTGCCACAACATTG 301
Query 308 CCATTGATGAGAATGTACTGGTGTCT-AGTAGCATGGAATCGGCTCTTGAACTTCTAGCC 366
|||||||||||||||| |||||| | | |||||||||||||||||||||||||||||||
Sbjct 302 CCATTGATGAGAATGTGTTGGTGTGTGA-TAGCATGGAATCGGCTCTTGAACTTCTAGCC 360
Query 367 ACTGAGCCCTATTCCTTGTCCATTGAGAAGGTCTTTGTCATAGGAGGCGGCGAGTTGTTA 426
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACCGAGCCTTATTCCTTGTCCATTGAGAAGGTCTTTGTCATAGGAGGCGGCGAGTTGTTA 420
Query 427 AGGAATTATATGAATGCATCCATCTGTGATGCTATCCACCTAACCGAAATCGATATAAGC 486
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 AGGAATTATATGAATGCACCCAGCTGTGATGCTATCCACCTAACCGAAATCGATATAAGC 480
Query 487 GTGCCATGTGACGCATTTGCACCGAGAGTGGATACTTCTCTGTACCGTCCGTGGTACTCA 546
|||||||| ||||||||||||||||| || |||||||||||||||| |||||||||||||
Sbjct 481 GTGCCATGCGACGCATTTGCACCGAGGGTAGATACTTCTCTGTACCATCCGTGGTACTCA 540
Query 547 TCATTTCCAGTTGTGGAAAATGGAATTCGGTATAGTTTCAACACTTATGTCCGAAGAAAA 606
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 TCATTTCCAATTGTGGAAAATGGAATTCGGTATAGCTTCAACACTTATGTCCGAAGAAAA 600
Query 607 GATGCCATTGTTGGCTCCGGTGAAAAGAAAAGTGTTGCTG-AGTCAGATTTGAAGGAGTA 665
|||||| ||||||| |||||||| |||||||||| ||||| | |||||||| ||||||||
Sbjct 601 GATGCCGTTGTTGGATCCGGTGAGAAGAAAAGTGCTGCTGGA-TCAGATTTCAAGGAGTA 659
Query 666 CTCGTTTTTGCCTAAGATGGTTTTCGAGAGGCATGAGGAGTTTGGTTACTTGAATCTTGT 725
|||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 660 CTCGTTCTTGCCTAAGATGGTTTTCGAGAGGCATGATGAGTTTGGTTACTTAAATCTTAT 719
Query 726 TCAAAACATTATATCTAGTGGAGACATGAATGACAATAGTACTCTTTCTAAATTTGGCTG 785
|||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||||
Sbjct 720 TCAAAACATTATATCTAGTGGAGACATGAATGACAACAATACTCTTACCAAATTTGGCTG 779
Query 786 TCAGATGCGGTTCAATCTGCGCAAGACTTTCCCGCTTCTCACGACCAAGAAAATATTCTG 845
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 780 TCAGATGCGGTTCAATCTGCGCAAGACTTTCCCGCTTCTCACAACCAAGAAAGTATTCTG 839
Query 846 GCTTGGTGTTGTAGAGGAAATACTACAACTTATCAGTGGTTCAAACAATCCCAAGGAAAA 905
||| || |||||||||||||| || ||||||||||||||||||| |||||||| ||||||
Sbjct 840 GCTAGGCGTTGTAGAGGAAATCCTTCAACTTATCAGTGGTTCAATCAATCCCATGGAAAA 899
Query 906 CGGTAGTCATATATGGGACACCGATGAGGCAAAAGAATATCTTGACAGTTTCGGAGTGAA 965
|||||| |||||||||||| |||||| || || ||||||||| ||||||||||||||||
Sbjct 900 GGGTAGTAATATATGGGACAGCGATGAAGCTAATGAATATCTTAACAGTTTCGGAGTGAA 959
Query 966 TGCCACCGAAGAAGATGGAGACAACCCATTCTTGCATGGACTTCACTGGAAACATTGTGA 1025
|||||| ||||||||||||||| ||| | |||| ||||||| || ||||||||| |||
Sbjct 960 TGCCACAGAAGAAGATGGAGACCACCAACACTTGTATGGACTCCAATGGAAACATACTGA 1019
Query 1026 TGCTAGGTTTGT-GATTCAAGAATTCAGTCAGCTCTCTGATGTTATAAACAAAATAAAGA 1084
|||||| | | | ||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1020 TGCTAGACTAATTG-TTCAAAAATTCAGTCAGCTCTCTGATGTTATAAACAAGATAAAGA 1078
Query 1085 ACAATCCTCATGATCAAAGGATCATGCTTGCCGCTTGTAATCCATT-AGATTTCAAGTTG 1143
||||||||||| ||||||| ||||||||| | || |||||||| || |||||| ||||||
Sbjct 1079 ACAATCCTCATAATCAAAGAATCATGCTTTCGGCGTGTAATCC-TTCAGATTTAAAGTTG 1137
Query 1144 TCGGTATCTCCTTGTCATACGTTCACACAGTTCTATGTGGCAAATGGTGAAGTTTCTTGT 1203
||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 1138 TCGGTATCTCCTTGTCAGACGTTCGCACAGTTCTATGTGGCAAATGGTGAACTTTCTAGT 1197
Query 1204 CAAATATACCAAAGCTCAACCGAAGCGAGTATCGGGATTCCTTTCAGTATCGCTACATAC 1263
||||| ||||| |||||||| ||||||||||||| |||||||||||||||| ||||||||
Sbjct 1198 CAAATCTACCAGAGCTCAACAGAAGCGAGTATCGAGATTCCTTTCAGTATCACTACATAC 1257
Query 1264 TCTCTTTTGACATGCATCATCGCTCATGTTTGCGATCTTGGAGCTGGTGATTTCATCCAT 1323
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||
Sbjct 1258 TCTCTTTTGACATGCATCATCGCTCATCTTTGCGATCTTGTTGCTGGTGATTTCATCTAT 1317
Query 1324 GTGATTGGACAAGCCTATATTAACAAAGCTCACGTCAAGGCTATACAAAAACAGCTTCAA 1383
||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1318 GTGATTGGACAAGCCCGTATTAATAAAGCTCGCGTCAAGGCTATACAAAAACAGCTTCAA 1377
Query 1384 ATCTCCCCTAAACCCTTCCCGATTTTGAAAATCAACCCTGAGAAAAAGAAGATGGACAAC 1443
|||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 1378 ATCTCCCCCAAACCGTTCCCGATTTTAAAAATCAACCCTGAGAAAAAAAAGATGGATAAC 1437
Query 1444 TTTGAGGCCTCTGATTTGGAACTCATGAGGATAT 1477
||||||||||| |||||||||||| || ||||||
Sbjct 1438 TTTGAGGCCTCAGATTTGGAACTCCTGGGGATAT 1471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55345125985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5