BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21560.1
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481023 jgi|Araly1|481023|fgenesh2_kg.4__83__AT2G21560.1 1236 0.0
> Ahg481023 jgi|Araly1|481023|fgenesh2_kg.4__83__AT2G21560.1
Length=1004
Score = 1236 bits (669), Expect = 0.0
Identities = 927/1043 (89%), Gaps = 52/1043 (5%)
Strand=Plus/Plus
Query 212 ATGGATTCGCTTAGTACTCAGAAGGCTAAACCAAGAAAGATGAAGGTTGTTGTGAAGAAG 271
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGATTCGCTTAGTACTCAGAAGGCTAAACCAAGAAAGATGAAGATTGTTGTGAAGAAG 60
Query 272 TCTCGGGCTCAAGTACTCTTAGATTTGTTTTACCGGGTGATCGAGATAACTCTAGTTATA 331
|||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 61 TCTCGGGCTCAAATACTCTTAGATTTCTTTTACCGGGTGATCGAGATAACCCTAGTTATG 120
Query 332 ATTACTCTAGCCAAGCTCTGTTACCAACTAGTCATCACGGTAGAGAGCTCTGGTCTCGCA 391
|||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||
Sbjct 121 GTTACAGTAGCCAAACTCTGTTACCAACTAGTCATCACGTTCGAGAGCTCTGGTCTCGCG 180
Query 392 AGTTTTCTCATCAACCGTCACCTTGCTTTCGTCTTGGGGAATACGATAGTCATCACCATA 451
|||||||||| |||||||||||||||||||||||||||||| ||||||| ||| | |||
Sbjct 181 GGTTTTCTCATTAACCGTCACCTTGCTTTCGTCTTGGGGAATGCGATAGTTATCGCTATA 240
Query 452 GTCGTCAAGTGTGGGTTCTTTGCGAATCAAGAAACTGATGCACGGAGAAACAGAAACGAT 511
||| ||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 241 GTCTTCAAGTGCGGGTTCTTTGCGAATCAAGAAACTGATGCACGGAGAAACAGCAATGAT 300
Query 512 TTTTACGACGAGTTTGTTCGGGAGAGCTCAAGAGGAGAACGGAGGTTACACACCGATGTG 571
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 TTTTACGACGAGTTTGTTCGGGAGAGCTCAAGAGGAGAACGGAGTTTACACACCGATGTG 360
Query 572 ATATGCAGAGAAAAACAGAGTGAAGTCGAGAGCGTTGCAAAACAAAGCATTGAAGAAAAC 631
|||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| |
Sbjct 361 ATATGCAGAGAAAAACAGAGTGAAGTAGAGAGCGTGGCAAAACAGAGCATTGAAGAAAGC 420
Query 632 AGAGCAAAACAGAGCATTGAAGATAAGAGACAAAGCAGAGCAAAACCGAGCATGTCAGAG 691
||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||
Sbjct 421 AGATCAAAACAGAGCATCGAAGATAAGAGACAAAGCAGAGCAAAACAGAGCATGTCCGAG 480
Query 692 AACAGGGCAAAACAGAGCACTGAAGAAAAGAGAGAGAAACTTAAAAAGTCTGAGATCAGT 751
|||||||||||||||||||||||||||||||||||||||| |||| | ||| | |
Sbjct 481 AACAGGGCAAAACAGAGCACTGAAGAAAAGAGAGAGAAAC--AAAA---CA-AGA-C--T 531
Query 752 GGCAGACAGAGCAGTGGCGATGAGAGTGAGAAGAAGGACATAACTGTGAAGAAACAAAGA 811
| ||| | |||||| || ||||| ||||||||||||||||||||||||| ||| |||
Sbjct 532 G--AGA-A---CAGTGGTGAAGAGAGAGAGAAGAAGGACATAACTGTGAAGAGACAGAGA 585
Query 812 CAAATCGTTGCTCAAAATCAAGATAGCCCAATGAAGAGTTACGAAAGGAGCCGGTCAGAG 871
|||||| |||||||||| || || || ||||||||||||||||||||||| ||||| |||
Sbjct 586 CAAATCATTGCTCAAAAGCAGGAAAGTCCAATGAAGAGTTACGAAAGGAGTCGGTCGGAG 645
Query 872 AATCACGAGGGCTCGAAGAAGAGTTCTTGTGTACAACTGAAGAGATCAGA-GACAGAGAG 930
||||| ||||||||||||||||| |||||| | ||||||||||||| || |||||||||
Sbjct 646 AATCAGGAGGGCTCGAAGAAGAGCACTTGTGGAAAACTGAAGAGATC-GAAGACAGAGAG 704
Query 931 ACCTGCTGATAGAATT-GTTTCTGATGATGAGCTACGATACAAAATCGAGTCTTTCATTG 989
|||||||||| ||||| ||||| ||||| || ||||||||||| ||||||||||||||||
Sbjct 705 ACCTGCTGAT-GAATTTGTTTCGGATGAGGAACTACGATACAAGATCGAGTCTTTCATTG 763
Query 990 CTAGACAGAGGAGGAACCAAAAGGATGAAGAGTTCTGTATTATCTAAAATGTATAAATAC 1049
| ||||||||||||||||||||||||||||||| | | |||| | | || |
Sbjct 764 CGAGACAGAGGAGGAACCAAAAGGATGAAGAGTA----A--A---AAAA-GCA-AAG-A- 810
Query 1050 TaaaaagcaaagaagaaaaaaagaaaaaCTTTAGTTTATGCAA--TACCATTCACATATA 1107
||||| ||| | |||| |||||||||| |||||||||| || ||||||||||||
Sbjct 811 -AAAAA--AAA-A-GAAA----GAAAAACTTTGGTTTATGCAAAATAGCATTCACATATA 861
Query 1108 T-T-T--GTGAGTGTTTGTATATATATGGGTAAAAATATTTCAATGCCCGAGCATAAATT 1163
| | | ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 862 TATATTTGTGAGTGTTTGTATATATACGGGTAAAAATATTTCAATGCCCGAGCATAAAAT 921
Query 1164 GTTGTTTTAGCTTTTCtttttttG---GTTTCTTTGTATAATTTTGTTAATCTTATATAT 1220
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 922 CTTGTTTTAGCTTTTCTTTTTTTTTTTGTTTCTTTGTATAATTTTGTTCATCTTATATAT 981
Query 1221 -T-ATGAAGTATAAGTTTTCTGT 1241
| ||||||||||||||||||||
Sbjct 982 ATTATGAAGTATAAGTTTTCTGT 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46357467072
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5