BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G21580.1 Length=669 Score E Sequences producing significant alignments: (Bits) Value Ahg490690 jgi|Araly1|490690|fgenesh2_kg.7__123__AT4G39200.2 483 9e-136 Ahg320007 jgi|Araly1|320007|fgenesh1_pm.C_scaffold_4000064 327 5e-89 > Ahg490690 jgi|Araly1|490690|fgenesh2_kg.7__123__AT4G39200.2 Length=576 Score = 483 bits (261), Expect = 9e-136 Identities = 316/342 (92%), Gaps = 5/342 (1%) Strand=Plus/Plus Query 93 CCGTCGAAATCACCATGGCGCCAAAGAAGGATAAGGTTCCACCACCGTCATCAAAGCCGG 152 |||||||| ||| ||||||||| ||||||||||||||||| ||||| ||||||||||||| Sbjct 96 CCGTCGAAGTCAACATGGCGCCGAAGAAGGATAAGGTTCCGCCACCATCATCAAAGCCGG 155 Query 153 CCAAATCTGGAGGTGGAAAACAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGA 212 | ||||| |||||||| || || |||||||||||||||||||||||||||||||||||| Sbjct 156 CGAAATCCGGAGGTGG--AA-AGCAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGA 212 Query 213 AGGTGAACAACATGGTGTTGTTTGATCAAGGC-ACTTATGACAAGCTTCTCACTGAAGCT 271 |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 213 AGGTGAACAACATGGTGTTGTTTGATCAAG-CTACTTATGACAAGCTTCTCACTGAAGCT 271 Query 272 CCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGATTAATGGGTCT 331 ||||| |||||||||||||| || || || ||||| ||||||||||||||||||||||| Sbjct 272 CCCAAATTCAAGCTCATCACCCCTTCCATTCTCTCTGACCGTATGAGGATTAATGGGTCG 331 Query 332 CTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGTTTGATCAGGATGGTCTCTGCA 391 || || |||||||||||||||||||||||||| |||||| |||||||||||||| |||| Sbjct 332 CTAGCAAGGAGGGCGATTAGGGAGCTAATGGCCAAAGGTGTGATCAGGATGGTCGCTGCT 391 Query 392 CACTCGAGCCAGCAGATCTACACTCGTGCCACCAACACCTAA 433 |||||||||||||||||||||||||||||||||||||||||| Sbjct 392 CACTCGAGCCAGCAGATCTACACTCGTGCCACCAACACCTAA 433 > Ahg320007 jgi|Araly1|320007|fgenesh1_pm.C_scaffold_4000064 Length=210 Score = 327 bits (177), Expect = 5e-89 Identities = 199/210 (95%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 224 ATGGTGTTGTTTGATCAAGGCACTTATGACAAGCTTCTCACTGAAGCTCCCAAGTTCAAG 283 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGTTTTGTTTGATCAAGGCACTTATGACAAGCTTCTCACTGAAGCTCCCAAGTTCAAG 60 Query 284 CTCATCACTCCATCAATCCTCTCCGACCGTATGAGGATTAATGGGTCTCTTGCGAGGAGG 343 ||||||||||| || || |||||||||||||||||||| |||||||||||||||||||| Sbjct 61 CTCATCACTCCGTCGATTCTCTCCGACCGTATGAGGATCAATGGGTCTCTTGCGAGGAGA 120 Query 344 GCGATTAGGGAGCTAATGGCAAAAGGTTTGATCAGGATGGTCTCTGCACACTCGAGCCAG 403 || || |||||||||||||| || ||||||||||||||||||||||| |||||||||||| Sbjct 121 GCCATAAGGGAGCTAATGGCCAAGGGTTTGATCAGGATGGTCTCTGCTCACTCGAGCCAG 180 Query 404 CAGATCTACACTCGTGCCACCAACACCTAA 433 |||||||||||||||||||||||||||||| Sbjct 181 CAGATCTACACTCGTGCCACCAACACCTAA 210 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24551158548 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5