BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G21580.1

Length=669
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490690 jgi|Araly1|490690|fgenesh2_kg.7__123__AT4G39200.2          483    9e-136
  Ahg320007 jgi|Araly1|320007|fgenesh1_pm.C_scaffold_4000064           327    5e-89 


> Ahg490690 jgi|Araly1|490690|fgenesh2_kg.7__123__AT4G39200.2
Length=576

 Score =  483 bits (261),  Expect = 9e-136
 Identities = 316/342 (92%), Gaps = 5/342 (1%)
 Strand=Plus/Plus

Query  93   CCGTCGAAATCACCATGGCGCCAAAGAAGGATAAGGTTCCACCACCGTCATCAAAGCCGG  152
            |||||||| ||| ||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct  96   CCGTCGAAGTCAACATGGCGCCGAAGAAGGATAAGGTTCCGCCACCATCATCAAAGCCGG  155

Query  153  CCAAATCTGGAGGTGGAAAACAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGA  212
            | ||||| ||||||||  || || ||||||||||||||||||||||||||||||||||||
Sbjct  156  CGAAATCCGGAGGTGG--AA-AGCAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGA  212

Query  213  AGGTGAACAACATGGTGTTGTTTGATCAAGGC-ACTTATGACAAGCTTCTCACTGAAGCT  271
            |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct  213  AGGTGAACAACATGGTGTTGTTTGATCAAG-CTACTTATGACAAGCTTCTCACTGAAGCT  271

Query  272  CCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGATTAATGGGTCT  331
            ||||| |||||||||||||| || || || ||||| ||||||||||||||||||||||| 
Sbjct  272  CCCAAATTCAAGCTCATCACCCCTTCCATTCTCTCTGACCGTATGAGGATTAATGGGTCG  331

Query  332  CTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGTTTGATCAGGATGGTCTCTGCA  391
            || || |||||||||||||||||||||||||| |||||| |||||||||||||| |||| 
Sbjct  332  CTAGCAAGGAGGGCGATTAGGGAGCTAATGGCCAAAGGTGTGATCAGGATGGTCGCTGCT  391

Query  392  CACTCGAGCCAGCAGATCTACACTCGTGCCACCAACACCTAA  433
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  392  CACTCGAGCCAGCAGATCTACACTCGTGCCACCAACACCTAA  433


> Ahg320007 jgi|Araly1|320007|fgenesh1_pm.C_scaffold_4000064
Length=210

 Score =  327 bits (177),  Expect = 5e-89
 Identities = 199/210 (95%), Gaps = 0/210 (0%)
 Strand=Plus/Plus

Query  224  ATGGTGTTGTTTGATCAAGGCACTTATGACAAGCTTCTCACTGAAGCTCCCAAGTTCAAG  283
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTTTTGTTTGATCAAGGCACTTATGACAAGCTTCTCACTGAAGCTCCCAAGTTCAAG  60

Query  284  CTCATCACTCCATCAATCCTCTCCGACCGTATGAGGATTAATGGGTCTCTTGCGAGGAGG  343
            ||||||||||| || || |||||||||||||||||||| |||||||||||||||||||| 
Sbjct  61   CTCATCACTCCGTCGATTCTCTCCGACCGTATGAGGATCAATGGGTCTCTTGCGAGGAGA  120

Query  344  GCGATTAGGGAGCTAATGGCAAAAGGTTTGATCAGGATGGTCTCTGCACACTCGAGCCAG  403
            || || |||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct  121  GCCATAAGGGAGCTAATGGCCAAGGGTTTGATCAGGATGGTCTCTGCTCACTCGAGCCAG  180

Query  404  CAGATCTACACTCGTGCCACCAACACCTAA  433
            ||||||||||||||||||||||||||||||
Sbjct  181  CAGATCTACACTCGTGCCACCAACACCTAA  210



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24551158548


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5