BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21590.1
Length=2034
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899427 jgi|Araly1|899427|Al_scaffold_0004_77 2462 0.0
Ahg490693 jgi|Araly1|490693|fgenesh2_kg.7__126__AT4G39210.1 1581 0.0
Ahg900246 jgi|Araly1|900246|Al_scaffold_0004_896 274 2e-72
> Ahg899427 jgi|Araly1|899427|Al_scaffold_0004_77
Length=1563
Score = 2462 bits (1333), Expect = 0.0
Identities = 1497/1575 (95%), Gaps = 15/1575 (1%)
Strand=Plus/Plus
Query 173 ATGGATTCTTCTTACTCCTTTGCCTTGGGGACAAGTAGTTCTATTTTGCCAAAACTCAGT 232
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1 ATGGATTCTTCTTACTACTTTGCCTTGGGGACAAGTAGTTCTATTCTGCCAAAACTCTGT 60
Query 233 TTCAGGAATGTAGAGAACAGATTTTATGGTGAGAAGAACAACAACAATGGTTTGTGTAAA 292
|||| |||||||||||||||||||| |||||||||| ||||||||||||||| | ||||
Sbjct 61 TTCAAGAATGTAGAGAACAGATTTTGGGGTGAGAAGATCAACAACAATGGTTTCTTTAAA 120
Query 293 CGTTT-TGGATCAGATTTGGGCTCCAAGAAGTTTAGGAATCAAAAGTTCAAGCACGGTGT 351
| ||| | |||||||||||||||| | | ||||| ||||||||||| | ||||
Sbjct 121 C-TTTCTAAATCAGATTTGGGCTCC----A----A-GAATCGAAAGTTCAAGCGCAGTGT 170
Query 352 TGTTTACGCTGTTGCCACTTCAG-ATAATCCAAAAAAGGCTATGACAGTAAAGACTTCCA 410
||||||||||||||||||||| | |||| |||||||||||||||||||||||| ||||||
Sbjct 171 TGTTTACGCTGTTGCCACTTC-GAATAACCCAAAAAAGGCTATGACAGTAAAGCCTTCCA 229
Query 411 TGTTTGAGAGAAGAAAGGTAGACCCGCAAAATGTGGCTGCAATCATTCTAGGAGGAGGCA 470
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
Sbjct 230 TGTTTGAGAGAAGAAAGGCAGACCCGCAAAACGTGGCTGCAATCATTCTAGGAGGAGGTA 289
Query 471 ATGGAGCTAAACTCTTCCCTCTTACAATGAGAGCCGCAACACCAGCTGTTCCTGTTGGTG 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 ATGGAGCTAAACTCTTCCCTCTTACAATGAGAGCCGCAACACCAGCTGTTCCTGTTGGTG 349
Query 531 GATGCTACAGGCTGATCGATATCCCGATGAGTAACTGTATTAACAGCTGCATCAACAAGA 590
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 350 GATGCTACAGGCTGATCGATATTCCGATGAGTAACTGCATTAACAGCTGCATCAACAAGA 409
Query 591 TATTTGTGCTGACACAGTTCAACTCAGCTTCCCTTAATCGACATTTAGCACGAACTTATT 650
| |||||||||||||| |||||||| |||||||| || |||||||||||||| |||||||
Sbjct 410 TCTTTGTGCTGACACAATTCAACTCTGCTTCCCTCAACCGACATTTAGCACGCACTTATT 469
Query 651 TTGGGAATGGCATAAACTTTGGAGGTGGTTTCGTAGAGGTTCTTGCTGCTACACAAACAC 710
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 470 TTGGGAATGGCATAAACTTCGGAGGTGGTTTCGTAGAGGTTCTTGCTGCAACACAAACAC 529
Query 711 CAGGGGAAGCTGGGAAGAA-GTGGTTTCAAGGAACAGCAGATGCTGTCAGAAAATTCCTC 769
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CAGGGGAAGCTGGGAA-AATGTGGTTTCAAGGAACAGCAGATGCTGTCAGAAAATTCCTC 588
Query 770 TGGGTGTTTGAGGATGCCAAGAACAGGAACATTGAGAACATACTTATTTTGTCTGGAGAT 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TGGGTGTTTGAGGATGCCAAGAACAGGAACATTGAGAACATACTTATTTTGTCTGGAGAT 648
Query 830 CATCTCTATAGAATGAACTACATGGACTTTGTTCAGTCTCATGTGGATAGTAATGCGGAT 889
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 649 CATCTCTATAGAATGAACTACATGGACTTTGTTCAGTCTCATGTCGATAGTAATGCAGAT 708
Query 890 ATTACTCTTTCGTGTGCACCAGTTAGTGAAAGCCGTGCATCAAATTTTGGTCTAGTAAAG 949
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 709 ATTACTCTTTCGTGTGCACCAGTCAGTGAAAGCCGTGCATCAAATTTTGGTCTAGTGAAG 768
Query 950 ATTGATCGAGGTGGGCGTGTAATCCATTTCTCCGAGAAACCAACAGGAGTCGACCTGAAA 1009
|||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 769 ATTGATAGAGGTGGGCGTGTAATCCATTTCTCCGAGAAACCAACGGGAGTCGATCTGAAA 828
Query 1010 TCAATGCAAACAGACACAACAATGCTTGGACTGTCTCATCAAGAAGCAACAGATTCTCCA 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 TCAATGCAAACAGACACAACAATGCTTGGACTGTCTCATCAAGAAGCAACAGATTCTCCA 888
Query 1070 TACATTGCATCAATGGGAGTTTATTGTTTCAAAACCGAAGCTTTGCTGAACCTTCTAACA 1129
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 889 TACATTGCATCAATGGGAGTTTATTGTTTCAAAACTGAAGCTTTGCTGAACCTTCTAACA 948
Query 1130 AGACAGTATCCGAGTTCCAATGACTTTGGATCTGAAGTTATTCCTGCAGCCATAAGAGAT 1189
|| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 949 AGGCGGTATCCGAGTTCCAATGACTTTGGATCTGAAATTATTCCTGCAGCCATAAGAGAT 1008
Query 1190 CACGATGTTCAAGGATACATATTCAGAGATTACTGGGAGGATATTGGAACTATAAAGACA 1249
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1009 CATGATGTTCAAGGATACATATTCCGAGATTACTGGGAGGATATTGGAACTATAAAGACA 1068
Query 1250 TTTTATGAGGCTAATTTAGCTCTTGTTGAGGAGCGACCAAAGTTTGAATTCTATGATCCA 1309
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1069 TTCTATGAGGCTAATTTAGCTCTTGTTGAGGAGCGGCCAAAGTTTGAATTCTATGATCCA 1128
Query 1310 GAAACTCCGTTCTACACTTCTCCTCGGTTCCTCCCACCAACAAAAGCTGAGAAATGTCGG 1369
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1129 GACACTCCGTTCTACACTTCTCCTCGGTTCCTCCCACCAACCAAAGCTGAGAAATGTCGC 1188
Query 1370 ATGGTAGATTCAATAATCTCACATGGATGTTTCCTGCGAGAATGCAGCGTCCAACGTTCA 1429
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1189 ATGGTAGATTCGATAATCTCACACGGATGTTTCCTGCGAGAATGCAGCGTCCAACGTTCC 1248
Query 1430 ATCATTGGTGAACGATCACGTCTAGACTACGGGGTTGAGCTTCAGGATACATTGATGTTA 1489
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1249 ATCATTGGTGAACGGTCACGTCTAGACTATGGAGTTGAGCTTCAGGATACATTGATGTTA 1308
Query 1490 GGTGCAGATTACTACCAAACTGAGTCTGAGATTGCATCTCTATTAGCAGAAGGAAAGGTT 1549
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1309 GGTGCAGATTACTACCAAACTGAATCTGAAATTGCATCTCTATTAGCAGAAGGAAAGGTT 1368
Query 1550 CCAATTGGTATTGGTAAAGACACAAAAATCAGGAAATGCATCATTGACAAGAATGCTAAG 1609
|||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1369 CCAATTGGCATTGGTAGAGACACAAAGATCAGGAAATGCATCATTGACAAGAATGCTAAG 1428
Query 1610 ATCGGTAAAAACGTGATCATCATGAACAAAGGCGATGTACAAGAAGCAGATAGGCCAGAG 1669
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1429 ATCGGTAAAAACGTGATCATCATGAACAAAGGCGATGTACAAGAAGCGGATAGGCCAGAG 1488
Query 1670 GAAGGATTCTACATTCGATCAGGAATCACTGTGATAGTCGAAAAGGCGACAATTCAAGAT 1729
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1489 GAAGGATTCTATATTCGATTGGGAATCACTGTGATAGTCGAAAAGGCGACAATTCAAGAC 1548
Query 1730 GGTACTGTAATATGA 1744
|||||||||||||||
Sbjct 1549 GGTACTGTAATATGA 1563
> Ahg490693 jgi|Araly1|490693|fgenesh2_kg.7__126__AT4G39210.1
Length=1896
Score = 1581 bits (856), Expect = 0.0
Identities = 1360/1600 (85%), Gaps = 48/1600 (3%)
Strand=Plus/Plus
Query 167 AAAAAGATGGATTCTTCTTACTCCTTT-GCCTTGGGGACAAGTAGTTCTATTTTG-CCAA 224
|||||||||||||||| || | |||| | ||||||||||| | || | ||| || |
Sbjct 117 AAAAAGATGGATTCTTTTTGCAACTTTAG-CTTGGGGACAA--A-CACTGTCTTGTCC-A 171
Query 225 AACTCAGTTTCAGGAATGTAGAGAACAGATTTTAT-GGTGAGAAGAACAACAACAATG-G 282
|| |||||||| |||||||||||||| ||||| | |||||||||| ||| | || | |
Sbjct 172 AAGACAGTTTCAAGAATGTAGAGAACAAATTTT-TGGGTGAGAAGATCAA-AGGAA-GCG 228
Query 283 TTTGTGTAAACGTTTTGGATCAGATTTGGGCTCCAAGAAGTTTAGGAATC-AAAAGTTCA 341
| | || |||| |||| |||||||| | ||||||||||| || |||| |||| || |
Sbjct 229 TCT-TG-AAACCTTTTTCTTCAGATTTAAGTTCCAAGAAGTTCAGAAATCGAAAA-TTGA 285
Query 342 AG-CACGGTGTTGTTTACGCTGTTGCCACTTCAGATAATCCAAAAAAGGCTATG-ACAGT 399
| | |||||||| |||||| |||| |||||| | ||| | ||| ||||| || | | |
Sbjct 286 GGTC-CGGTGTTGCTTACGCCATTGCTACTTCAAAGAATGCTAAAGAGGCTTTGAAAAAT 344
Query 400 AAAGACTTCCATGTTTGAGAGAAGAAAG-GTAGACCCGCAA-AATGTGGCTGCAATCATT 457
|| ||| ||||| ||||||| |||| | ||| ||| || ||||||||||||||||||
Sbjct 345 CAA-CCTTTAATGTTCGAGAGAA-AAAGAGCAGATCCG-AAGAATGTGGCTGCAATCATT 401
Query 458 CTAGGAGGAGGCAATGGAGCTAAACTCTTCCCTCTTACAATGAGAGCCGCAACACCAGCT 517
|||||||||||| |||||||||||||||| |||||||||| | |||| |||||||| |||
Sbjct 402 CTAGGAGGAGGCGATGGAGCTAAACTCTTTCCTCTTACAAAGCGAGCAGCAACACCGGCT 461
Query 518 GTTCCTGTTGGTGGATGCTACAGGCTGATCGATATCCCGATGAGTAACTGTATTAACAGC 577
|||||||| ||||||||||| ||| |||||||||||||||||||||| || ||||||||
Sbjct 462 GTTCCTGTGGGTGGATGCTATAGGATGATCGATATCCCGATGAGTAATTGCATTAACAGT 521
Query 578 TGCATCAACAAGATATTT-GTGCTGACACAGTTCAACTCAGCTTCCCTTAATCGACATTT 636
||||| |||||||| ||| |||||||| ||||| ||||| |||||||| ||||| |||||
Sbjct 522 TGCATAAACAAGAT-TTTCGTGCTGACTCAGTTTAACTCGGCTTCCCTCAATCGCCATTT 580
Query 637 AGCACGAACTTATTTTGGGAATGGCATAAACTTTGGAGGTGGTTTCGTAGAGGTTCTTGC 696
|| || ||||||||||||||||||||||||||||||| |||||| || |||||||| ||
Sbjct 581 GGCTCGTACTTATTTTGGGAATGGCATAAACTTTGGAGATGGTTTTGTTGAGGTTCTGGC 640
Query 697 TGCTACACAAACACCAGGGGAAGCTGGGAAGAAGTGGTTTCAAGGAACAGCAGATGCTGT 756
|||||||||||| || || ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 641 TGCTACACAAACTCCTGGTGAAGCCGGGAAAAAGTGGTTTCAAGGAACAGCAGATGCTGT 700
Query 757 CAGAAAATTCCTCTGGGTGTTTGAGGATGCCAAGAACAGGAACATTGAGAACATACTTAT 816
|||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 701 GAGAAAATTTCTCTGGGTGTTTGAGGATGCTAAGAACAGGAACATTGAGAATATACTCAT 760
Query 817 TTTGTCTGGAGATCATCTCTATAGAATGAACTACATGGACTTTGTTCAGT-CTCATGTGG 875
|||||||||||||| || |||||||||||||| |||||||||||||||| | ||||| |
Sbjct 761 CTTGTCTGGAGATCACCTATATAGAATGAACTATATGGACTTTGTTCAGTAC-CATGTCG 819
Query 876 ATAGTAATGCGGATATTACTCTTTCGTGTGCACCAGTT-AGTGAAAGCCGTGCATCAAAT 934
||||||| |||||||||||||||||||| || |||||| | ||| |||||||||||| ||
Sbjct 820 ATAGTAAAGCGGATATTACTCTTTCGTGCGCGCCAGTTGA-TGAGAGCCGTGCATCAGAT 878
Query 935 TTTGGTCTAGTAAAGATTGATCGAGGTGGGCGTGTAATCCATTTCTCCGAGAAACCAACA 994
| ||| || || || ||||||||| | ||||||||| |||||||||| |||||||||||
Sbjct 879 TATGGACTGGTCAATATTGATCGAAGCGGGCGTGTAGTCCATTTCTCTGAGAAACCAACT 938
Query 995 GG-AGTCGACCTGAAATCAATGCAAACAGACACAACAATGCTTGGACTGTCTCATCAAGA 1053
|| | |||| ||||||||||||||||| || || || |||| ||||||||||||||||||
Sbjct 939 GGCA-TCGATCTGAAATCAATGCAAACCGATACTACTATGCATGGACTGTCTCATCAAGA 997
Query 1054 AGCAACAGATTCTCCATACATTGCATCAATGGGAGTTTATTGTTTCAAAACCGAAGCTTT 1113
|||| || | |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 998 AGCAGCAAAATCTCCATACATTGCGTCAATGGGAGTTTATTGCTTCAAAACCGAAGCTTT 1057
Query 1114 GCTGAACCTTCTAACAAGACAGTATCCGAGTTCCAATGACTTTGGATCTGAAGTTATTCC 1173
||||| ||||| ||| | | ||||||||||||||||||||||||||||||| |||||||
Sbjct 1058 ACTGAAGCTTCTGACATGGCGGTATCCGAGTTCCAATGACTTTGGATCTGAAATTATTCC 1117
Query 1174 TGCAGCCATAAGAGATCACGATGTTCAAGGATACATATTCAGAGATTACTGGGAGGATAT 1233
|||||| |||||||||||| |||||||||||||||| | |||||| || ||||| |||||
Sbjct 1118 TGCAGCTATAAGAGATCACAATGTTCAAGGATACATCTACAGAGACTATTGGGAAGATAT 1177
Query 1234 TGGAACTATAAAGACATTT-TATGAGGCTAAT-TTAGCTCTTGTTGAGGAGCGA-CCAAA 1290
||||||||||||| ||| ||||| |||||| || || ||||| ||||||| | || ||
Sbjct 1178 CGGAACTATAAAGAG-TTTCTATGAAGCTAATCTT-GCCCTTGTCGAGGAGC-ATCCCAA 1234
Query 1291 GTTTGAATTCTATGATCCAGAA-ACTCCGTTCTACACTTCTCCTCGGTTCCTCCCACCAA 1349
|||||| || || |||| |||| || || |||||||||||||||||||| | ||||| |
Sbjct 1235 GTTTGAGTTTTACGATC-AGAATACGCCTTTCTACACTTCTCCTCGGTTTTTACCACCCA 1293
Query 1350 C-AAAAGCTGAGAAATGTCGGATGGTAGATTCAATAATCTCACATGGATGTTTCCTGCGA 1408
| |||| | |||||||| ||||| ||| |||| ||||||||||| ||||||||| || |
Sbjct 1294 CCAAAACC-GAGAAATGCCGGATTGTAAATTCGATAATCTCACACGGATGTTTCTTGGGG 1352
Query 1409 GAATGCAGCGTCCAACGTTCAATCATTGGTGAACGATCACGTCTAGACTACGGGGTTGAG 1468
|||||||||||||||||||| |||||||||||| | |||||||| ||||| || ||||||
Sbjct 1353 GAATGCAGCGTCCAACGTTCCATCATTGGTGAAAGGTCACGTCTTGACTATGGTGTTGAG 1412
Query 1469 CTTCAGGATACA-TTGATGTTAGGTGCAGATTACT-ACCAAACTGAGTCTGAGATTGCAT 1526
||||||||||| || |||||||| || ||| | | ||||||| || |||||||| || |
Sbjct 1413 CTTCAGGATACTCTT-ATGTTAGGAGCGGAT-AGTTACCAAACCGAATCTGAGATCGCGT 1470
Query 1527 CTCTATTAGCAGAAGGAAAGGTTCCAATTGGTATTGGTAAAGACACAAAAATCAGGAAAT 1586
|||| | || |||||||| ||||||||||| ||||| ||| ||||| ||||||||||
Sbjct 1471 CTCTGCTCGCGGAAGGAAATGTTCCAATTGGCATTGGCCGAGATACAAAGATCAGGAAAT 1530
Query 1587 GCATCATTGACAAGAATGCTAAGATCGGTAAAAACGTGATCATCATGAACAAAGGCGATG 1646
||||||||||||||||||| |||||||| ||||||||||| ||| ||||||||| ||||
Sbjct 1531 GCATCATTGACAAGAATGCAAAGATCGGGAAAAACGTGATGATCTTGAACAAAGATGATG 1590
Query 1647 TACAAG-AAGCAGATAGGCCAGAGGAAGGATTCTACATTCGATCAGGAATCACTGTGATA 1705
| ||| |||| ||||| |||||||||||||||||||||||||| |||||||||||| |
Sbjct 1591 TT-AAGGAAGCTGATAGACCAGAGGAAGGATTCTACATTCGATCTGGAATCACTGTGGTT 1649
Query 1706 GTCGAAAAGGCGACAATTCAAGATGGTACTGTAATATGAA 1745
||||||||||| || ||| |||| |||||||| |||||||
Sbjct 1650 GTCGAAAAGGCCACCATTAAAGACGGTACTGTGATATGAA 1689
> Ahg900246 jgi|Araly1|900246|Al_scaffold_0004_896
Length=273
Score = 274 bits (148), Expect = 2e-72
Identities = 162/169 (96%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 1015 GCAAACAGACACAACAATGCTTGGACTGTCTCATCAAGAAGCAACAGATTCTCCATACAT 1074
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 GCAAACGGACACAATAATGCTTGGACTGTCTCATCAAGAAGCAACAGATTCTCCATACAT 155
Query 1075 TGCATCAATGGGAGTTTATTGTTTCAAAACCGAAGCTTTGCTGAACCTTCTAACAAGACA 1134
|||||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||||||
Sbjct 156 TGCATCAATGGGAGTTAATTGTTTCACAACCGAAGCTTTGTTGAGCCTTCTAACAAGACA 215
Query 1135 GTATCCGAGTTCCAATGACTTTGGATCTGAAGTTATTCCTGCAGCCATA 1183
|||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 GTATCCTAGTTCCAATGACTTTGGATCTGAAGTTATTCCTGCAGCCATA 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76485211960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5