BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21600.1
Length=988
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481027 jgi|Araly1|481027|fgenesh2_kg.4__87__AT2G21600.1 977 0.0
> Ahg481027 jgi|Araly1|481027|fgenesh2_kg.4__87__AT2G21600.1
Length=756
Score = 977 bits (529), Expect = 0.0
Identities = 609/648 (94%), Gaps = 4/648 (1%)
Strand=Plus/Plus
Query 119 TTCTTCACCATCCGTTTCAAGAATAACAATGGAAGGAAGCGGTGGTGACAGTGGTTCGAT 178
||||| |||||||||| ||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 86 TTCTTTACCATCCGTTGCAAGAATCACAATGGATGGAAGTGGTGGTGACAGTGGTTCGAT 145
Query 179 GGCTACGCCTGTACAAAAGAAAGTACATGAGGCATGGAGGGTTTACCAATATTATCTGGA 238
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 146 GGCTACACCTGTACAAAAGAAGGTACATGAGGCATGGAGGGTTTACCAATATTATCTGGA 205
Query 239 CAAGACTACACCTCATTCAACTAACAGGTGGATCGGAACACTTGTTTTCTTTCTTATCTA 298
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 206 CAAGACTACACCTCATTCAACTAACAGGTGGATCGGAACACTCGTCGTCTTTCTTATCTA 265
Query 299 CTGTTTGAGGGTTTACTCTATTCACGGATTCTACATCATCTCCTATGGTCTTGGAATCTA 358
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 266 CTGTTTGAGGGTTTACTCTATTCAGGGATTCTACATCATCTCCTATGGTCTTGGAATCTA 325
Query 359 CCTCCTGAATCTGCTTATCGGGTTTTTGTCTCCTCTTGTTGATCCTGAGCTCGAGGT-AT 417
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |
Sbjct 326 CCTCCTGAATCTGCTTATCGGGTTCTTGTCCCCTCTTGTTGATCCTGAGCTCGAAGTCA- 384
Query 418 CTGATGGAGCTACTCTGCCTACTCGAGGTTCTGATGAGTTCAAGCCATTTATCCGCCGTC 477
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 385 CTGATGGAGCTACTCTCCCTACTCGAGGTTCTGATGAGTTCAAGCCATTTATCCGTCGAC 444
Query 478 TCCCGGAGTTTAAATTCTGGTACTCCATGACTAAGGCATTCTGCATAGCCTTTCTTATGA 537
| || |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 445 TGCCAGAGTTTAAATTCTGGTACTCCATGACTAAGGCATTCTGCATAGCATTTCTCATGA 504
Query 538 CATTCTTCTCGGTGTTTGATGTTCCCGTCTTCTGGCCCATACTGCTTTGCTACTGGGTCG 597
| ||||||||||| ||||| ||||||||||||||||| ||| | |||||||||||||| |
Sbjct 505 CGTTCTTCTCGGTCTTTGACGTTCCCGTCTTCTGGCCTATATTACTTTGCTACTGGGTTG 564
Query 598 TTCTCTTTGTCCTCACCATGAGACGCCAAATAGCCCACATGATCAAGCACAAGTACATTC 657
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 565 TTCTCTTTGTCCTCACCATGAGACGCCAAATCGCCCACATGATCAAGCACAAGTACATTC 624
Query 658 CTTTCAGCATCGGAAAACAGAAATATAGCGGCCGGAAATCTTCTGCGAACAGCGGCGGCG 717
|||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||
Sbjct 625 CTTTCAGCATCGGAAAACAGAAATATAGCGGCCGGAGATCTTCTGCGAGCAGCAGCGGCG 684
Query 718 GCTCTCGTGCTGATTGATTTCAACTTG-CAGCCACATTTTCTGCAGAA 764
||||||||||||||||||||| | ||| ||||||| || |||||||||
Sbjct 685 GCTCTCGTGCTGATTGATTTCGA-TTGTCAGCCACGTTCTCTGCAGAA 731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36712369071
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5