BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G21610.1 Length=1059 Score E Sequences producing significant alignments: (Bits) Value Ahg320010 jgi|Araly1|320010|fgenesh1_pm.C_scaffold_4000067 1554 0.0 > Ahg320010 jgi|Araly1|320010|fgenesh1_pm.C_scaffold_4000067 Length=1059 Score = 1554 bits (841), Expect = 0.0 Identities = 988/1059 (93%), Gaps = 9/1059 (1%) Strand=Plus/Plus Query 1 ATGGGACTTTATAAAACGAAGTCCAAACGTTCAATTGCTAACTATCATCATATCATAATC 60 ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| || Sbjct 1 ATGGGTCTTTATAAAACAAAGTCCAAACGTTCAATTGCTAACTATTATCATATCATACTC 60 Query 61 ATCAATATTttcatcctctcttcaatcacatcttcttccatggcttcttc---ttcttct 117 |||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||||| Sbjct 61 ATCAATATTTTCATTCTCTCTTCAATCACATTTTCATCCATGGCTTCTTCTAATTCTTCT 120 Query 118 ccatcttccatTGATTTTTCGACTGCAATTCTAATAAGAGTTGATCAATCGGGCAAAGGA 177 | ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 121 TCGTCTTCCATTGATTTTTCTACTGCAATTCTAATAAGGGTTGATCAATCGGGCAAAGGA 180 Query 178 GACTTCAGTAAGATTCAAGAAGCAATTGAATCTATCCCTCCCAATCTAAACAACTCTCAA 237 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 181 GACTTCAGTAAGATTCAAGAAGCAATAGAATCTATCCCTCCCAATCTAAACAACTCTCAA 240 Query 238 CTCTATTTCATTTGGGTTAAGCCTGGAATTTACCGAGAAAAAGTGGTGATACCTGCGGAG 297 ||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 241 CTCTATTACATTTGGGTTAAGCCTGGAATTTACCGAGAAAAGGTGGTGATTCCTGCGGAT 300 Query 298 AAACCCTACATAACATTGAGTGGGACACAAGCTTCCAACACTTTTCTCATATGGAGCGAT 357 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 301 AAACCCTACATAACATTGAGTGGAACACAAGCTTCCAACACCTTTCTCATATGGAGCGAT 360 Query 358 GGCGAAGACATTTTGGAATCACCCACTCTCACTATCTTTG-CATCCGATTTTGTATGCCG 416 || | ||||||||||||||||||||||||||| || |||| || ||||||| ||||| || Sbjct 361 GGTGGAGACATTTTGGAATCACCCACTCTCACAATATTTGCCA-CCGATTTCGTATGTCG 419 Query 417 ATTTCTCACTATTCAGAATAAGTTTGGAACGGCGGGACGTGCGGTTGCACTGAGGGTGGC 476 |||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| Sbjct 420 ATTTCTCACTATTCAGAATAAGCTTGGAACGGCGGGACGGGCGGTTGCACTGCGGGTGGC 479 Query 477 GGCGGATAAGGCAGCGTTCTACGGATGCGTGATAACGTCGTACCAAGACACTCTCCTTGA 536 |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 480 AGCGGATAAGGCAGCGTTCTATGGATGCGTGATAACATCGTACCAAGACACTCTCCTTGA 539 Query 537 CGACAATGGAAACCATTACTTCAAGAACTGCTATATTGAAGGAGCCACCGATTTCATTTG 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CGACAATGGAAACCATTACTTCAAGAACTGCTATATTGAAGGAGCCACCGATTTCATTTG 599 Query 597 TGGAAGCGCTTCTTCTCTATATGAAAGGTGTCATTTACACTCGTTGTCGCCGAATAATGG 656 |||||||||||||||||| |||||||| |||||| ||||||||||||| |||| ||| || Sbjct 600 TGGAAGCGCTTCTTCTCTCTATGAAAGATGTCATCTACACTCGTTGTCACCGACTAAAGG 659 Query 657 GTCTATAACGGCGCAAATGAGAACGTCGGCCACAGAGAAATCAGGCTTTACATTCTTGGG 716 |||||||||||||||||||||||||||||| || ||||||||||| |||| ||||||||| Sbjct 660 GTCTATAACGGCGCAAATGAGAACGTCGGCGACGGAGAAATCAGGGTTTATATTCTTGGG 719 Query 717 ATGCAAGTTAACTGGAT-CAGGTTCCACATTTTTGGGAAGACCATGGGGAGCTTATTCTA 775 |||||||||||| |||| || ||||||| | ||||||||| ||||||||| ||||||||| Sbjct 720 ATGCAAGTTAACCGGATCCA-GTTCCACGTATTTGGGAAGGCCATGGGGACCTTATTCTA 778 Query 776 GGGTTGTCTTTGCTTATTCCTTCTTCTCCAATGTCGTCGCACCTCAAGGATGGAACCAAT 835 ||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 779 GGGTTATCTTTGCTTATTCCTTCTTCTCCAATGTCGTCGCACCTCGAGGGTGGAACCAAT 838 Query 836 GGGGAGATTCAACCAAAGAAAATACTGTATATTATGGTGAATACAAATGTTATGGTCCCG 895 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 839 GGGGAGATTCAACCAAAGAAAATACCGTATATTATGGTGAATACAAATGTTACGGTCCCG 898 Query 896 GAGCAGACAGGGAACAAAGAGTAGAATGGTCAAAACAGTTATCGGATGAAGAAGCTACCG 955 |||||||||||| |||||||||| ||||||||||||| ||||| || || |||||||||| Sbjct 899 GAGCAGACAGGGGACAAAGAGTAAAATGGTCAAAACAATTATCCGACGACGAAGCTACCG 958 Query 956 TCTTCTTGAGCAAGGACTTTATCGGCGGCAAAGACTGGCTCCGACCTGCCCCTTCTCACT 1015 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 959 TCTTCTTGAGCAAGGACTTTATCGGCGGCAAAGACTGGCTCCGACCTGCCCCTTCCCACT 1018 Query 1016 TCAAGAA-TGCTCCCAAACAAACCC-AAAATAAAGAAAT 1052 |||| || || ||||||| |||||| |||||| | |||| Sbjct 1019 TCAAAAAATGGTCCCAAATAAACCCGAAAATATATAAAT 1057 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39419096178 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5