BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21610.1
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320010 jgi|Araly1|320010|fgenesh1_pm.C_scaffold_4000067 1554 0.0
> Ahg320010 jgi|Araly1|320010|fgenesh1_pm.C_scaffold_4000067
Length=1059
Score = 1554 bits (841), Expect = 0.0
Identities = 988/1059 (93%), Gaps = 9/1059 (1%)
Strand=Plus/Plus
Query 1 ATGGGACTTTATAAAACGAAGTCCAAACGTTCAATTGCTAACTATCATCATATCATAATC 60
||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1 ATGGGTCTTTATAAAACAAAGTCCAAACGTTCAATTGCTAACTATTATCATATCATACTC 60
Query 61 ATCAATATTttcatcctctcttcaatcacatcttcttccatggcttcttc---ttcttct 117
|||||||||||||| |||||||||||||||| ||| |||||||||||||| |||||||
Sbjct 61 ATCAATATTTTCATTCTCTCTTCAATCACATTTTCATCCATGGCTTCTTCTAATTCTTCT 120
Query 118 ccatcttccatTGATTTTTCGACTGCAATTCTAATAAGAGTTGATCAATCGGGCAAAGGA 177
| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 121 TCGTCTTCCATTGATTTTTCTACTGCAATTCTAATAAGGGTTGATCAATCGGGCAAAGGA 180
Query 178 GACTTCAGTAAGATTCAAGAAGCAATTGAATCTATCCCTCCCAATCTAAACAACTCTCAA 237
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GACTTCAGTAAGATTCAAGAAGCAATAGAATCTATCCCTCCCAATCTAAACAACTCTCAA 240
Query 238 CTCTATTTCATTTGGGTTAAGCCTGGAATTTACCGAGAAAAAGTGGTGATACCTGCGGAG 297
||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 241 CTCTATTACATTTGGGTTAAGCCTGGAATTTACCGAGAAAAGGTGGTGATTCCTGCGGAT 300
Query 298 AAACCCTACATAACATTGAGTGGGACACAAGCTTCCAACACTTTTCTCATATGGAGCGAT 357
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 301 AAACCCTACATAACATTGAGTGGAACACAAGCTTCCAACACCTTTCTCATATGGAGCGAT 360
Query 358 GGCGAAGACATTTTGGAATCACCCACTCTCACTATCTTTG-CATCCGATTTTGTATGCCG 416
|| | ||||||||||||||||||||||||||| || |||| || ||||||| ||||| ||
Sbjct 361 GGTGGAGACATTTTGGAATCACCCACTCTCACAATATTTGCCA-CCGATTTCGTATGTCG 419
Query 417 ATTTCTCACTATTCAGAATAAGTTTGGAACGGCGGGACGTGCGGTTGCACTGAGGGTGGC 476
|||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||
Sbjct 420 ATTTCTCACTATTCAGAATAAGCTTGGAACGGCGGGACGGGCGGTTGCACTGCGGGTGGC 479
Query 477 GGCGGATAAGGCAGCGTTCTACGGATGCGTGATAACGTCGTACCAAGACACTCTCCTTGA 536
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 480 AGCGGATAAGGCAGCGTTCTATGGATGCGTGATAACATCGTACCAAGACACTCTCCTTGA 539
Query 537 CGACAATGGAAACCATTACTTCAAGAACTGCTATATTGAAGGAGCCACCGATTTCATTTG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CGACAATGGAAACCATTACTTCAAGAACTGCTATATTGAAGGAGCCACCGATTTCATTTG 599
Query 597 TGGAAGCGCTTCTTCTCTATATGAAAGGTGTCATTTACACTCGTTGTCGCCGAATAATGG 656
|||||||||||||||||| |||||||| |||||| ||||||||||||| |||| ||| ||
Sbjct 600 TGGAAGCGCTTCTTCTCTCTATGAAAGATGTCATCTACACTCGTTGTCACCGACTAAAGG 659
Query 657 GTCTATAACGGCGCAAATGAGAACGTCGGCCACAGAGAAATCAGGCTTTACATTCTTGGG 716
|||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||
Sbjct 660 GTCTATAACGGCGCAAATGAGAACGTCGGCGACGGAGAAATCAGGGTTTATATTCTTGGG 719
Query 717 ATGCAAGTTAACTGGAT-CAGGTTCCACATTTTTGGGAAGACCATGGGGAGCTTATTCTA 775
|||||||||||| |||| || ||||||| | ||||||||| ||||||||| |||||||||
Sbjct 720 ATGCAAGTTAACCGGATCCA-GTTCCACGTATTTGGGAAGGCCATGGGGACCTTATTCTA 778
Query 776 GGGTTGTCTTTGCTTATTCCTTCTTCTCCAATGTCGTCGCACCTCAAGGATGGAACCAAT 835
||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 779 GGGTTATCTTTGCTTATTCCTTCTTCTCCAATGTCGTCGCACCTCGAGGGTGGAACCAAT 838
Query 836 GGGGAGATTCAACCAAAGAAAATACTGTATATTATGGTGAATACAAATGTTATGGTCCCG 895
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 839 GGGGAGATTCAACCAAAGAAAATACCGTATATTATGGTGAATACAAATGTTACGGTCCCG 898
Query 896 GAGCAGACAGGGAACAAAGAGTAGAATGGTCAAAACAGTTATCGGATGAAGAAGCTACCG 955
|||||||||||| |||||||||| ||||||||||||| ||||| || || ||||||||||
Sbjct 899 GAGCAGACAGGGGACAAAGAGTAAAATGGTCAAAACAATTATCCGACGACGAAGCTACCG 958
Query 956 TCTTCTTGAGCAAGGACTTTATCGGCGGCAAAGACTGGCTCCGACCTGCCCCTTCTCACT 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 959 TCTTCTTGAGCAAGGACTTTATCGGCGGCAAAGACTGGCTCCGACCTGCCCCTTCCCACT 1018
Query 1016 TCAAGAA-TGCTCCCAAACAAACCC-AAAATAAAGAAAT 1052
|||| || || ||||||| |||||| |||||| | ||||
Sbjct 1019 TCAAAAAATGGTCCCAAATAAACCCGAAAATATATAAAT 1057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39419096178
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5