BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21640.1
Length=536
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899434 jgi|Araly1|899434|Al_scaffold_0004_84 460 3e-129
> Ahg899434 jgi|Araly1|899434|Al_scaffold_0004_84
Length=315
Score = 460 bits (249), Expect = 3e-129
Identities = 294/316 (93%), Gaps = 2/316 (1%)
Strand=Plus/Plus
Query 50 ATGGCTTCCCAGACAAATCAAACCGTGGTGGATACCA-AGAAAATCGAAACCGAGAACCC 108
||||||||||||||||| |||||||||||||||| || ||||||| ||||||||||||||
Sbjct 1 ATGGCTTCCCAGACAAAGCAAACCGTGGTGGATA-CACAGAAAATTGAAACCGAGAACCC 59
Query 109 GCCAAAACCGCAAGTGCCTGCATCATCATGCAGGAAGAGGGTGAAGGATGATAACGCCAC 168
|||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 60 GCCAAAACCGGAAGTGCCTTTATCATCATGCAGGAAGAGGGTGAAGGATGATAATGCCAC 119
Query 169 TTTCTTTGCAAACCTCAAGGATCACATGGATGAATTCATACATGCCTCAATGGATGAACA 228
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 TTTCTTTGAAAACCTCAAGGATCACATGGATGAATTCATCCATGCCTCAATGGATGAACA 179
Query 229 CAAGACTTGTTTCAAAAACACCATGGACAAGATATTCGGGAGCTTCTCCAAGGCGGAGGC 288
||||||||||||||||||||||||| ||||||| || |||| ||| || ||| | || ||
Sbjct 180 CAAGACTTGTTTCAAAAACACCATGAACAAGATGTTTGGGACCTTTTCGAAGTCTGATGC 239
Query 289 AGTTGCAGAGAAGCAAATTGAGGCTAAGGAAGTGGTCGAGATTCACTCTCCTCTTCAGAC 348
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
Sbjct 240 AGTTGCAGAGAAGCAAGTTGAGGCTAAGGAAGTCGTCGAGATTCACTCTCCTCTTCAGGC 299
Query 349 AGCAGTGACTAAGTAG 364
||||||||||||||||
Sbjct 300 AGCAGTGACTAAGTAG 315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19535661568
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5