BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21650.1
Length=614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481032 jgi|Araly1|481032|fgenesh2_kg.4__92__AT2G21650.1 841 0.0
> Ahg481032 jgi|Araly1|481032|fgenesh2_kg.4__92__AT2G21650.1
Length=603
Score = 841 bits (455), Expect = 0.0
Identities = 550/591 (93%), Gaps = 25/591 (4%)
Strand=Plus/Plus
Query 34 ACACAAAACCAAACATCATCAACTTTAGTTACTAAACAATGGCATCAGGCTCAATGTCTT 93
|||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 ACACAAAACC-AA-A-CATCAACTTTAGTTACTAAACAATGGCATCAGGCTCAATGTCTT 80
Query 94 CTTATGGCTCTGGCTCATGGACTGTTAAGCAGAACAAAGCCTTTGAGCGTGCTCTAGCAG 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CTTATGGCTCTGGCTCATGGACTGTTAAGCAGAACAAAGCCTTTGAGCGTGCTCTAGCAG 140
Query 154 TCTATGACCAAGACACTCCGGACCGTTGGCACAATGTTGCTAGAGCTGTTGGTGGTAAAA 213
||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||
Sbjct 141 TCTATGACCAAGACACTCCTGACCGTTGGCACAATATTGCTAGATCTGTTGGTGGTAAAA 200
Query 214 CACCAGAAGAAGCTAAGAGACAGTATGACCTTCTAGTTCGTGACATCGAAAGCATCGAGA 273
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 201 CACCAGAAGAAGCTAAGAGACAATATGACCTTCTCGTGCGTGACATCGAAAGCATCGAGA 260
Query 274 ATGGTCACGTGCCATTCCCTGACTACAAGACTACTACAGGAAACAGCAACAGAGGCAGGC 333
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 261 ATGGTCACGTGCCGTTCCCTGACTACAAGACTACTACTGGAAACAGCAACAGAGGCAGGC 320
Query 334 TGCGTGATGAGGAAAAGAGGATGAGAAGCATGAAGCTGCAGTGAGACAAGAAGCAACAAA 393
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 321 TGCGTGATGAGGAAAAGAGGATGAGAAGCATGAAGCTGCAGTGAAACAAGAAGCAACAAA 380
Query 394 AC---------CTAACTACGTATGATCGTCAA-AA--TAAAAGAGAATCACTTCAGAGAG 441
| ||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 381 AAAAAAAAAAACTAACTACGTATGATCGTCAAGAAAATAAAAGAGAATCACTTCAGAGAG 440
Query 442 ATGTGtttttttCAATGTCTGACGAATCAATGttttttt-CTTGCAATTTCTCATGTTTT 500
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 441 ATGTGTTTTTTTCGATGTCTGACGAATCAATGTTTTTTTTCTTGCAATTTCTCATGTTTT 500
Query 501 TCCCTAAGAAATGGtttttttttC-GAGGCAACaaaaaaaaaaTAACACTCGAATTTGTT 559
||||||||| |||||||||||| ||||||| |||||| |||||||||| |||
Sbjct 501 -CCCTAAGAATTGGTTTTTTTTTTTGAGGCAA-AAAAAAG------CACTCGAATTAGTT 552
Query 560 AACCAAAATCTGTATTTAGGGTTCTTCGTAATGAAAAATCCAATGTCTAAA 610
|||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 553 AACCAAAATCTGTATTTAGGGTTCTTCGTAATGAAAAATCCATTGTCTAAA 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22454398113
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5