BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21655.1
Length=562
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932114 jgi|Araly1|932114|scaffold_400102.1 593 3e-169
Ahg932115 jgi|Araly1|932115|scaffold_400103.1 590 4e-168
> Ahg932114 jgi|Araly1|932114|scaffold_400102.1
Length=511
Score = 593 bits (321), Expect = 3e-169
Identities = 447/508 (88%), Gaps = 7/508 (1%)
Strand=Plus/Plus
Query 28 aaatatcaaaatattttaaaatggagaataaaacaatGTTT-ATGATATTTTCTTTGATC 86
||| ||||||||| ||||||||||||| |||||| || ||| ||||||| |||||| |||
Sbjct 1 AAACATCAAAATACTTTAAAATGGAGACTAAAACCAT-TTTCATGATATATTCTTTAATC 59
Query 87 ATGGTTTTGCTATCGTTTTCTCATCCAACTTTCGGCAA-AGAAAGCGATAATGACAAGCC 145
|||||||||||||||||||||||||||||||| ||| | |||| ||||||||||| ||||
Sbjct 60 ATGGTTTTGCTATCGTTTTCTCATCCAACTTT-GGCCATAGAAGGCGATAATGACGAGCC 118
Query 146 ACTCCTCATTTCAGACGACGAGTTTGATGCTATGATGGCAA-GATCTCCTACATCGGACA 204
||| ||||||||||||||||||||||||| ||||| |||| | || || |||||||||
Sbjct 119 ACTACTCATTTCAGACGACGAGTTTGATGGGATGATTGCAATG-TCACCAACATCGGACG 177
Query 205 ATTATAACGAAAATGTTGGTAGTAAATATTCAAAGAAACAAATAAATTATCTTATGAACT 264
|||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| |
Sbjct 178 ATTATAACGAAAATGTTGGTCGTAAATATTCAAAAAAACAAATAGATTATCTTAAGAATT 237
Query 265 GCAGTAAAAAGATGGCCGTCCCAGATAAATGTATAGAAGAAGTGATGGCTGAAATTATTC 324
||||||||||||||| ||||||| || |||||| | ||||||| | ||||| |||||||
Sbjct 238 GCAGTAAAAAGATGGACGTCCCATATCAATGTACCGTAGAAGTGTTAGCTGATATTATTC 297
Query 325 AGAACAAAAGTGCTTCAAGAGATTGTTGTTTGGGGATAGTGAAAGCTGGAAAGGAATGTC 384
|||||||||||| |||||| ||||||||| ||||||||||| |||||||||||||||||
Sbjct 298 AGAACAAAAGTGTTTCAAGGGATTGTTGTCGGGGGATAGTGAGAGCTGGAAAGGAATGTC 357
Query 385 ACATGGAATATATGAAATTATTTTTTCAAATGTATGAACTCAGGCGTTTTACTTCTAAAA 444
||| ||||| ||| ||||||||||||||| ||| |||||| ||||||| ||||||
Sbjct 358 ACACGGAATGGATGCGATTATTTTTTCAAATATATCAACTCAAACGTTTTAGTTCTAAGC 417
Query 445 GGTTTTCCAAAACTAATGAGATATGGAACAGATGTTCCACCGAAATTGGAGTTGTTTCAC 504
||||||||||||||||||| |||||||| |||||||| || |||||||||| ||||||||
Sbjct 418 GGTTTTCCAAAACTAATGAAATATGGAATAGATGTTCTACTGAAATTGGAGCTGTTTCAC 477
Query 505 CATATTCTGGTTaaaaaaaTGTAACTAA 532
||| |||| ||||||||| |||||||||
Sbjct 478 CATTTTCTCGTTAAAAAA-TGTAACTAA 504
> Ahg932115 jgi|Araly1|932115|scaffold_400103.1
Length=511
Score = 590 bits (319), Expect = 4e-168
Identities = 454/517 (88%), Gaps = 17/517 (3%)
Strand=Plus/Plus
Query 31 tatcaaaatattttaaaatggagaataaaacaatGTTT-ATGATATTTTCTTTGATCATG 89
||||||||||||||||||||||||||||||| || ||| |||||||||||||| ||||||
Sbjct 4 TATCAAAATATTTTAAAATGGAGAATAAAACTAT-TTTCATGATATTTTCTTTAATCATG 62
Query 90 GTTTTGCTATCGTTTTCTCATCCAACTTTCGGCAA-AGAAAGCGATAATGACAAGCCACT 148
||||||||||||||||||||||||||||| ||| | |||| ||||||||||| || |||
Sbjct 63 GTTTTGCTATCGTTTTCTCATCCAACTTT-GGCTATAGAAGGCGATAATGACGAGTCAC- 120
Query 149 C-CTCATTTCAGACGACGAGTTTGATGCTATGATGGCAA-GATCTCCTACATCGGACAAT 206
| |||||||||||||||||||||||||| ||||| |||| | || || ||||||||| ||
Sbjct 121 CACTCATTTCAGACGACGAGTTTGATGCGATGATTGCAATG-TCACCGACATCGGACGAT 179
Query 207 TATAACGAAAATGTTGGTA--GTAAATATTCAAAGAAACAAATAA-ATTATCTTATGAAC 263
||||||| ||| | | || |||| |||||||| ||||||| || ||||||||| ||||
Sbjct 180 TATAACGTCAATAT-G-TATCGTAAGTATTCAAAAAAACAAA-AAGATTATCTTAAGAAC 236
Query 264 TGCAGTAAAAAGATGGCCGTCCCAGATAAATGTATAGAAGAAGTGATGGCTGAAATTATT 323
|||||||||||||||| ||||||| | ||||| ||||||||| | ||||||||| ||
Sbjct 237 TGCAGTAAAAAGATGGACGTCCCATACCAATGTGCCGAAGAAGTGTTAGCTGAAATTCTT 296
Query 324 CAGAACAAAAGTGCTTCAAGAGATTGTTGTTTGGGGATAGTGAAAGCTGGAAAGGAATGT 383
| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 297 CTGAACAAAAGTGCTTCAAGAGATTGTTGTCGGGGGATAGTGAAAGCTGGAAAAGAATGT 356
Query 384 CACATGGAATATATGAAATTATTTTTTCAAATGTATGAACTCAGGCGTTTTACTTCTAAA 443
|||||||||| |||||| |||||||||||| | ||| |||||| |||||| ||||||||
Sbjct 357 CACATGGAATTTATGAACTTATTTTTTCAAGTCTATCAACTCAAACGTTTTTCTTCTAAA 416
Query 444 AGGTTTTCCAAAACTAATG-AGATATGGAACAGATGTTCCACCGAAATTGGAGTTGTTTC 502
|||||||| ||| |||||| | ||||||||||||||||| || |||||||||| ||||||
Sbjct 417 AGGTTTTCTAAATCTAATGCA-ATATGGAACAGATGTTCTACTGAAATTGGAGCTGTTTC 475
Query 503 ACCATATTCTGGTTaaaaaaaTGTAACTAATTTTATT 539
||| | |||||||||||||| ||||||||||||||||
Sbjct 476 ACCCTTTTCTGGTTAAAAAA-TGTAACTAATTTTATT 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20527706882
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5