BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G21655.1 Length=562 Score E Sequences producing significant alignments: (Bits) Value Ahg932114 jgi|Araly1|932114|scaffold_400102.1 593 3e-169 Ahg932115 jgi|Araly1|932115|scaffold_400103.1 590 4e-168 > Ahg932114 jgi|Araly1|932114|scaffold_400102.1 Length=511 Score = 593 bits (321), Expect = 3e-169 Identities = 447/508 (88%), Gaps = 7/508 (1%) Strand=Plus/Plus Query 28 aaatatcaaaatattttaaaatggagaataaaacaatGTTT-ATGATATTTTCTTTGATC 86 ||| ||||||||| ||||||||||||| |||||| || ||| ||||||| |||||| ||| Sbjct 1 AAACATCAAAATACTTTAAAATGGAGACTAAAACCAT-TTTCATGATATATTCTTTAATC 59 Query 87 ATGGTTTTGCTATCGTTTTCTCATCCAACTTTCGGCAA-AGAAAGCGATAATGACAAGCC 145 |||||||||||||||||||||||||||||||| ||| | |||| ||||||||||| |||| Sbjct 60 ATGGTTTTGCTATCGTTTTCTCATCCAACTTT-GGCCATAGAAGGCGATAATGACGAGCC 118 Query 146 ACTCCTCATTTCAGACGACGAGTTTGATGCTATGATGGCAA-GATCTCCTACATCGGACA 204 ||| ||||||||||||||||||||||||| ||||| |||| | || || ||||||||| Sbjct 119 ACTACTCATTTCAGACGACGAGTTTGATGGGATGATTGCAATG-TCACCAACATCGGACG 177 Query 205 ATTATAACGAAAATGTTGGTAGTAAATATTCAAAGAAACAAATAAATTATCTTATGAACT 264 |||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| | Sbjct 178 ATTATAACGAAAATGTTGGTCGTAAATATTCAAAAAAACAAATAGATTATCTTAAGAATT 237 Query 265 GCAGTAAAAAGATGGCCGTCCCAGATAAATGTATAGAAGAAGTGATGGCTGAAATTATTC 324 ||||||||||||||| ||||||| || |||||| | ||||||| | ||||| ||||||| Sbjct 238 GCAGTAAAAAGATGGACGTCCCATATCAATGTACCGTAGAAGTGTTAGCTGATATTATTC 297 Query 325 AGAACAAAAGTGCTTCAAGAGATTGTTGTTTGGGGATAGTGAAAGCTGGAAAGGAATGTC 384 |||||||||||| |||||| ||||||||| ||||||||||| ||||||||||||||||| Sbjct 298 AGAACAAAAGTGTTTCAAGGGATTGTTGTCGGGGGATAGTGAGAGCTGGAAAGGAATGTC 357 Query 385 ACATGGAATATATGAAATTATTTTTTCAAATGTATGAACTCAGGCGTTTTACTTCTAAAA 444 ||| ||||| ||| ||||||||||||||| ||| |||||| ||||||| |||||| Sbjct 358 ACACGGAATGGATGCGATTATTTTTTCAAATATATCAACTCAAACGTTTTAGTTCTAAGC 417 Query 445 GGTTTTCCAAAACTAATGAGATATGGAACAGATGTTCCACCGAAATTGGAGTTGTTTCAC 504 ||||||||||||||||||| |||||||| |||||||| || |||||||||| |||||||| Sbjct 418 GGTTTTCCAAAACTAATGAAATATGGAATAGATGTTCTACTGAAATTGGAGCTGTTTCAC 477 Query 505 CATATTCTGGTTaaaaaaaTGTAACTAA 532 ||| |||| ||||||||| ||||||||| Sbjct 478 CATTTTCTCGTTAAAAAA-TGTAACTAA 504 > Ahg932115 jgi|Araly1|932115|scaffold_400103.1 Length=511 Score = 590 bits (319), Expect = 4e-168 Identities = 454/517 (88%), Gaps = 17/517 (3%) Strand=Plus/Plus Query 31 tatcaaaatattttaaaatggagaataaaacaatGTTT-ATGATATTTTCTTTGATCATG 89 ||||||||||||||||||||||||||||||| || ||| |||||||||||||| |||||| Sbjct 4 TATCAAAATATTTTAAAATGGAGAATAAAACTAT-TTTCATGATATTTTCTTTAATCATG 62 Query 90 GTTTTGCTATCGTTTTCTCATCCAACTTTCGGCAA-AGAAAGCGATAATGACAAGCCACT 148 ||||||||||||||||||||||||||||| ||| | |||| ||||||||||| || ||| Sbjct 63 GTTTTGCTATCGTTTTCTCATCCAACTTT-GGCTATAGAAGGCGATAATGACGAGTCAC- 120 Query 149 C-CTCATTTCAGACGACGAGTTTGATGCTATGATGGCAA-GATCTCCTACATCGGACAAT 206 | |||||||||||||||||||||||||| ||||| |||| | || || ||||||||| || Sbjct 121 CACTCATTTCAGACGACGAGTTTGATGCGATGATTGCAATG-TCACCGACATCGGACGAT 179 Query 207 TATAACGAAAATGTTGGTA--GTAAATATTCAAAGAAACAAATAA-ATTATCTTATGAAC 263 ||||||| ||| | | || |||| |||||||| ||||||| || ||||||||| |||| Sbjct 180 TATAACGTCAATAT-G-TATCGTAAGTATTCAAAAAAACAAA-AAGATTATCTTAAGAAC 236 Query 264 TGCAGTAAAAAGATGGCCGTCCCAGATAAATGTATAGAAGAAGTGATGGCTGAAATTATT 323 |||||||||||||||| ||||||| | ||||| ||||||||| | ||||||||| || Sbjct 237 TGCAGTAAAAAGATGGACGTCCCATACCAATGTGCCGAAGAAGTGTTAGCTGAAATTCTT 296 Query 324 CAGAACAAAAGTGCTTCAAGAGATTGTTGTTTGGGGATAGTGAAAGCTGGAAAGGAATGT 383 | |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 297 CTGAACAAAAGTGCTTCAAGAGATTGTTGTCGGGGGATAGTGAAAGCTGGAAAAGAATGT 356 Query 384 CACATGGAATATATGAAATTATTTTTTCAAATGTATGAACTCAGGCGTTTTACTTCTAAA 443 |||||||||| |||||| |||||||||||| | ||| |||||| |||||| |||||||| Sbjct 357 CACATGGAATTTATGAACTTATTTTTTCAAGTCTATCAACTCAAACGTTTTTCTTCTAAA 416 Query 444 AGGTTTTCCAAAACTAATG-AGATATGGAACAGATGTTCCACCGAAATTGGAGTTGTTTC 502 |||||||| ||| |||||| | ||||||||||||||||| || |||||||||| |||||| Sbjct 417 AGGTTTTCTAAATCTAATGCA-ATATGGAACAGATGTTCTACTGAAATTGGAGCTGTTTC 475 Query 503 ACCATATTCTGGTTaaaaaaaTGTAACTAATTTTATT 539 ||| | |||||||||||||| |||||||||||||||| Sbjct 476 ACCCTTTTCTGGTTAAAAAA-TGTAACTAATTTTATT 511 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20527706882 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5