BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21660.1
Length=836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481034 jgi|Araly1|481034|fgenesh2_kg.4__94__AT2G21660.2 490 7e-138
Ahg490700 jgi|Araly1|490700|fgenesh2_kg.7__133__AT4G39260.1 300 1e-80
> Ahg481034 jgi|Araly1|481034|fgenesh2_kg.4__94__AT2G21660.2
Length=671
Score = 490 bits (265), Expect = 7e-138
Identities = 301/319 (94%), Gaps = 0/319 (0%)
Strand=Plus/Plus
Query 56 TAGATCTTCTTTTCAAATTTCAATGGCGTCCGGTGATGTTGAGTATCGGTGCTTCGTTGG 115
||||||||||| |||||||||||||||||| | ||||||||||| ||||||||||||||
Sbjct 1 TAGATCTTCTTCTCAAATTTCAATGGCGTCTGCAGATGTTGAGTACCGGTGCTTCGTTGG 60
Query 116 AGGTCTAGCATGGGCCACTGATGACAGAGCTCTTGAGACTGCCTTCGCTCAATACGGCGA 175
||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 61 AGGTCTAGCTTGGGCCACTGATGACAGAGCTCTTGAAACTGCCTTCTCTCAATACGGCGA 120
Query 176 CGTTATTGATTCCAAGATCATTAACGATCGTGAGACTGGAAGATCAAGGGGATTCGGATT 235
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGTTGTTGATTCCAAGATCATTAACGATCGTGAGACTGGAAGATCAAGGGGATTCGGATT 180
Query 236 CGTCACCTTCAAGGATGAGAAAGCCATGAAGGATGCGATTGAGGGAATGAACGGACAAGA 295
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 181 CGTCACCTTCAAGGATGAGAAATCCATGAAGGATGCGATTGAAGGAATGAACGGACAAGA 240
Query 296 TCTCGATGGCCGTAGCATCACTGTTAACGAGGCTCAGTCACGAGGAAGCGGTGGCGGCGG 355
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 241 GCTCGATGGACGTAGCATCACTGTTAACGAGGCTCAGTCACGAGGAAGCGGCGGCGGAGG 300
Query 356 AGGCCACCGTGGAGGTGGT 374
||| |||||||||||||
Sbjct 301 CGGCGGCCGTGGAGGTGGT 319
Score = 388 bits (210), Expect = 3e-107
Identities = 339/394 (86%), Gaps = 37/394 (9%)
Strand=Plus/Plus
Query 415 GTGGAGGTGGTAGCTACGGAGGT---GGCGGCGGTAGACGCGAGGGTGGAGGAGGATACA 471
||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||
Sbjct 309 GTGGAGGTGGTAGCTACGGAGGTGGCGGCGGCGGTAGACGTGAGGGAGGAGGTGGATACA 368
Query 472 GCGGCGGCGGCGGCGGTTACTCCTC-A-A-GAGGTGGTGGTGGCGGAAGCTacggtggtg 528
|||| || || |||||||| || | | ||||||||||||||||||||||||||||||
Sbjct 369 ---GCGGTGGTGGAGGTTACTCGTCAAGAGGAGGTGGTGGTGGCGGAAGCTACGGTGGTG 425
Query 529 gaagacgtgagggaggaggaggatacggtggtggtgaaggaggaggttacggaggaagcg 588
|||||||||| || |||||||||||||| ||| |||||||||| ||||||||||||||||
Sbjct 426 GAAGACGTGAAGGTGGAGGAGGATACGGCGGTAGTGAAGGAGGGGGTTACGGAGGAAGCG 485
Query 589 gtggtggtggaggatggtAATTCCTTTAATTAGGTTTGGGATTACCAATGAATGTTCTCT 648
|||| || ||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 486 GTGGAGG---AGGATGGTAATTCCTTTAATTAGATTTGGGATTATCAATGAATGTTCTCT 542
Query 649 CTCTCGCTTGTTATGCTTCTACTTGGTTTTGTGTGTTCTCTATTTTGTTCTGGTTCTGCT 708
||||| | || | |||| || | ||| | || || | | |||||||
Sbjct 543 CTCTCTAT-GT---G-TTCT-CT-G-TTT-G-GT-TT---------G----G-TTCTGCT 577
Query 709 TTAGATTTGATGTAACAGTTCGTGATTAGGTATTTTGGTATCTGGAAACGTAATGTTAAG 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 TTAGATTTGATGTAACAGTTCGTGATTAGGTATTTTGGTATCTGGAAACGTAATGTTAAG 637
Query 769 TCACTTGTCATTCTCTAAATAACAAATTTCTTCG 802
||||||||||||||||||||||||| ||||||||
Sbjct 638 TCACTTGTCATTCTCTAAATAACAATTTTCTTCG 671
> Ahg490700 jgi|Araly1|490700|fgenesh2_kg.7__133__AT4G39260.1
Length=788
Score = 300 bits (162), Expect = 1e-80
Identities = 287/347 (83%), Gaps = 10/347 (3%)
Strand=Plus/Plus
Query 93 GTTGAGTATCGGTGCTTCGTTGGAGGTCTAGCATGGGCCACTGATGA-CAGAGCTCTTGA 151
|||||||| |||||||| || || || || || |||||||| | || || || ||| ||
Sbjct 107 GTTGAGTACCGGTGCTTTGTCGGCGGCCTTGCCTGGGCCACCCAAGATCA-AGATCTAGA 165
Query 152 GACTG-CCTTCGCTCAATACGGCGACGTTATTGATTCCAAGATCATTAACGATCGTGAGA 210
| | ||||| | |||| |||||||||| | ||||| ||||||||||||||||| ||||
Sbjct 166 -AAGGACCTTCTCACAATTCGGCGACGTTCTCGATTCTAAGATCATTAACGATCGCGAGA 224
Query 211 CTGGAAGATCAAGGGGATTCGGATTCGTCACCTTCAAGGATGAGAAAGCCATGAAGGATG 270
||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| |
Sbjct 225 CTGGAAGGTCAAGGGGATTCGGATTCGTCACCTTCAAGGACGAGAAAGCCATGAGGGACG 284
Query 271 CGATTGAGG-GAATGAACGGACAAGATCTCGATGGCCGTAGCATCACTGTTAACGAGGCT 329
||||||||| || |||||||| |||| |||||||| |||| |||||| || ||||||||
Sbjct 285 CGATTGAGGAGA-TGAACGGAAAAGAGCTCGATGGACGTACCATCACCGTGAACGAGGCA 343
Query 330 CAGTCACGAGGAAGCGGTGGCGGCGGAGGCCACCGTGGAGGTGGTGGCGGTGGATACCGC 389
|||||| |||| ||||| || || ||||||| ||||||| ||||| ||||| ||||||
Sbjct 344 CAGTCAAGAGGTAGCGGCGGTGGAGGAGGCC---GTGGAGGCGGTGGAGGTGGTTACCGC 400
Query 390 AGCGGCGGTGGTGGAGGTTACTCCGGTGGAGGTGGTAGCTACG-GAG 435
||||| || ||||| || ||| || ||||||||| | |||| |||
Sbjct 401 AGCGGAGGCGGTGGCGGATACGGAGGAGGAGGTGGTGGTTACGAGAG 447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30917685687
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5