BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G21680.1 Length=1290 Score E Sequences producing significant alignments: (Bits) Value Ahg899437 jgi|Araly1|899437|Al_scaffold_0004_87 682 0.0 Ahg481897 jgi|Araly1|481897|fgenesh2_kg.4__957__AT2G29780.1 63.9 3e-09 > Ahg899437 jgi|Araly1|899437|Al_scaffold_0004_87 Length=1182 Score = 682 bits (369), Expect = 0.0 Identities = 430/459 (94%), Gaps = 5/459 (1%) Strand=Plus/Plus Query 1 ATGGTTTTAATCTCTGAAACTTCCGACGACGGCTCTACTGGCGGCGATCATCAAATCAAG 60 ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||| Sbjct 1 ATGGTTTTAATCTCTGAAACTTCCGACGACGGCTCTAATGGCGGCAATCATCAAAAAAAG 60 Query 61 AAACCTAAAAAAGAAGAGGATCGAAACAAGAAATTGAAAGAAAA-G--GTTCAGGTGTCG 117 |||||||| |||||||| |||||||||||||| |||||||||| | ||| | |||||| Sbjct 61 AAACCTAAGGAAGAAGAGAATCGAAACAAGAAACTGAAAGAAAAGGTTGTTAAAGTGTCG 120 Query 118 CTACCAATTCCAGAA-GAACTCATCTTACGTTGCTTCCTACTCGTTCGGAGATGTCACCA 176 ||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CTACCGATTCCA-AACGAACTCATCTTACGTTGCTTCCTACTCGTTCGGAGATGTCACCA 179 Query 177 CCCGTCGCTTTCCCTCGTCTGCAGATCCTTCCATAGTCTCATGTCGAAGCTCTACGATGA 236 ||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| || Sbjct 180 CCCGTCGCTTTCCCTCGTCTGTAGTTCCTTCCATCGTCTCATGTCGAAGCTCTACGACGA 239 Query 237 TCGCTTGCGTCTCGGCTACACCGAAAACGTTCTTTACGCCTACGTTGGATTCCCTCCTGT 296 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 240 TCGCTTGCGTCTCGGCTACACAGAAAACGTTCTTTACGCCTACGTTGGATTCCCTCCTGT 299 Query 297 TGAAAACCCTAGCTGGTACATTCTCCATCGTAAACCCTATCGAAACTTGCCTAACACGAT 356 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 300 TGAAAACCCTAGCTGGTACATTCTCCATCGGAAACCCTATCGATACTTGCCTAACACGAT 359 Query 357 TTCGTTGAAATTGTGCAAAATCGATTCCCTCCCTCCCATGCCTTGGGGATCTACTGTCGT 416 ||| || ||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 360 TTCTTTAAAACTGTGCAAACTCGATTCCCTCCCTCCCATGCCTTGGAGATCTACTGTCGT 419 Query 417 CACTATCGGATCGGATATCTATGTCATTGGTGGACGCGT 455 ||||||||||||||||||||||||||| ||||||||||| Sbjct 420 CACTATCGGATCGGATATCTATGTCATCGGTGGACGCGT 458 Score = 652 bits (353), Expect = 0.0 Identities = 495/562 (88%), Gaps = 16/562 (3%) Strand=Plus/Plus Query 734 AGAGTTGGAGTTCTGTGCCAGGTCCGTACCCTGAAGCGTTTGGAAGAGGAGAGTTTCTGA 793 ||||||||||||||||||| ||||| |||||| ||||||||| ||||| ||||||||||| Sbjct 626 AGAGTTGGAGTTCTGTGCCTGGTCCATACCCTAAAGCGTTTGAAAGAGAAGAGTTTCTGA 685 Query 794 CATATGCGGTGATGAAGGAGAAGATTTACTGTTTGGATCTTACTCGCAATATTCATATTT 853 ||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||| Sbjct 686 CATATGCGGTGATGAAGGAGAAGATATACTGTTTGGATCTTTTTAGCAATGTTCATATTT 745 Query 854 ATGATCCTAAGGAAAGTAAATGGGAGTCTT-GGACTCATGGACCGTTGAGTGCTTCTTGG 912 ||||||| |||||||||||||||||||||| || || |||| |||||||| || |||| Sbjct 746 ATGATCCCAAGGAAAGTAAATGGGAGTCTTGGGTTTC-TGGAGCGTTGAGTTATTTTTGG 804 Query 913 AATGATTCGTCTTGTGTGGTTGATAATTTGCTGTTTTGCATCAATAC-ATCAGTGTATTT 971 |||||||||||||||||| ||||||||||||||||||||| ||||| || |||| || Sbjct 805 AATGATTCGTCTTGTGTGATTGATAATTTGCTGTTTTGCAAGAATACAAT-AGTGCGGTT 863 Query 972 CCTTGGAT---GGCCAATAAAAATATATGATCCAGAGAAGAAGACTTGGT-TTTACTTGC 1027 || ||||| ||||| |||||||||||||||||||| |||| ||||| ||| |||| Sbjct 864 CCATGGATGGCGGCCAGTAAAAATATATGATCCAGAGCGGAAGGTTTGGTGTTT-CTTGG 922 Query 1028 AAGGTTTACAAGGTTTTCCAGCTAATGGTCTCTTTGTGGATGGATATAAAATGGCTAATT 1087 ||||||||||||||||||||| || | ||||| | |||| || |||||||||||||| Sbjct 923 AAGGTTTACAAGGTTTTCCAG--AA-AATATCTTTCTCGATGAATGTAAAATGGCTAATT 979 Query 1088 TTGGCGGGAAGTTGGTGATTTTGAGCGCTGATGTGCA-CCGGCTTAGGCGGTATGACTGT 1146 |||| ||||||||| |||||||| ||||||||||| | |||| ||||| || ||||| || Sbjct 980 TTGGTGGGAAGTTGCTGATTTTGGGCGCTGATGTG-AGCCGGATTAGGGGGAATGACGGT 1038 Query 1147 AGGAAAAGAGAGATTTGGTGCATAGAGATTGCTTGGGAAAGAAAGGAAGATGGTACATTT 1206 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 1039 AGGAAAAGAGAGATTTGGTGCATAGAGATTGCTTGGGAAAGAAAGGAAAATGGTAGATTT 1098 Query 1207 TGGGGGAAGGTCGAATCAGTGGCGGTTGTGCTTACACCAGCAAAGACGACTTCTGTTGA- 1265 |||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| Sbjct 1099 TGGGGGAAGGTCGAATCAGTCGCGGTTGTGCTTACACCAACAAAGACGTCTTCTGTTGAT 1158 Query 1266 CA-TTTGTGGAACTGTTACGGT 1286 | ||||| ||||||||||||| Sbjct 1159 CCCTTTGTAGAACTGTTACGGT 1180 Score = 132 bits (71), Expect = 8e-30 Identities = 83/89 (93%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 595 CACGAGTATCGCTCCCTCCCGAGTATGAAGATGGCTCGCTGTCGCGCAGCCGCGGGTGTA 654 |||||||||||||| ||||| ||||||||| |||||||||| || |||||||| |||||| Sbjct 532 CACGAGTATCGCTCGCTCCCTAGTATGAAGGTGGCTCGCTGCCGTGCAGCCGCAGGTGTA 591 Query 655 ATTGACGGAAAGATTTATGTGATCGGAGG 683 ||||||||||||||||||||||||||||| Sbjct 592 ATTGACGGAAAGATTTATGTGATCGGAGG 620 > Ahg481897 jgi|Araly1|481897|fgenesh2_kg.4__957__AT2G29780.1 Length=1435 Score = 63.9 bits (34), Expect = 3e-09 Identities = 55/64 (86%), Gaps = 5/64 (8%) Strand=Plus/Plus Query 1 ATGGTTTTAATCTCTGAAACTTCCGACGACGGCTCTA-CTGGCGGCGATCATCAAATCAA 59 |||| | |||||||||||||||||||||||||||||| | || |||| | | |||| ||| Sbjct 1 ATGGCTATAATCTCTGAAACTTCCGACGACGGCTCTAAC-GGTGGCG-T-ACCAAA-CAA 56 Query 60 GAAA 63 |||| Sbjct 57 GAAA 60 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48225490005 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5