BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21680.1
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899437 jgi|Araly1|899437|Al_scaffold_0004_87 682 0.0
Ahg481897 jgi|Araly1|481897|fgenesh2_kg.4__957__AT2G29780.1 63.9 3e-09
> Ahg899437 jgi|Araly1|899437|Al_scaffold_0004_87
Length=1182
Score = 682 bits (369), Expect = 0.0
Identities = 430/459 (94%), Gaps = 5/459 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTTAATCTCTGAAACTTCCGACGACGGCTCTACTGGCGGCGATCATCAAATCAAG 60
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||
Sbjct 1 ATGGTTTTAATCTCTGAAACTTCCGACGACGGCTCTAATGGCGGCAATCATCAAAAAAAG 60
Query 61 AAACCTAAAAAAGAAGAGGATCGAAACAAGAAATTGAAAGAAAA-G--GTTCAGGTGTCG 117
|||||||| |||||||| |||||||||||||| |||||||||| | ||| | ||||||
Sbjct 61 AAACCTAAGGAAGAAGAGAATCGAAACAAGAAACTGAAAGAAAAGGTTGTTAAAGTGTCG 120
Query 118 CTACCAATTCCAGAA-GAACTCATCTTACGTTGCTTCCTACTCGTTCGGAGATGTCACCA 176
||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTACCGATTCCA-AACGAACTCATCTTACGTTGCTTCCTACTCGTTCGGAGATGTCACCA 179
Query 177 CCCGTCGCTTTCCCTCGTCTGCAGATCCTTCCATAGTCTCATGTCGAAGCTCTACGATGA 236
||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| ||
Sbjct 180 CCCGTCGCTTTCCCTCGTCTGTAGTTCCTTCCATCGTCTCATGTCGAAGCTCTACGACGA 239
Query 237 TCGCTTGCGTCTCGGCTACACCGAAAACGTTCTTTACGCCTACGTTGGATTCCCTCCTGT 296
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCGCTTGCGTCTCGGCTACACAGAAAACGTTCTTTACGCCTACGTTGGATTCCCTCCTGT 299
Query 297 TGAAAACCCTAGCTGGTACATTCTCCATCGTAAACCCTATCGAAACTTGCCTAACACGAT 356
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 300 TGAAAACCCTAGCTGGTACATTCTCCATCGGAAACCCTATCGATACTTGCCTAACACGAT 359
Query 357 TTCGTTGAAATTGTGCAAAATCGATTCCCTCCCTCCCATGCCTTGGGGATCTACTGTCGT 416
||| || ||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 360 TTCTTTAAAACTGTGCAAACTCGATTCCCTCCCTCCCATGCCTTGGAGATCTACTGTCGT 419
Query 417 CACTATCGGATCGGATATCTATGTCATTGGTGGACGCGT 455
||||||||||||||||||||||||||| |||||||||||
Sbjct 420 CACTATCGGATCGGATATCTATGTCATCGGTGGACGCGT 458
Score = 652 bits (353), Expect = 0.0
Identities = 495/562 (88%), Gaps = 16/562 (3%)
Strand=Plus/Plus
Query 734 AGAGTTGGAGTTCTGTGCCAGGTCCGTACCCTGAAGCGTTTGGAAGAGGAGAGTTTCTGA 793
||||||||||||||||||| ||||| |||||| ||||||||| ||||| |||||||||||
Sbjct 626 AGAGTTGGAGTTCTGTGCCTGGTCCATACCCTAAAGCGTTTGAAAGAGAAGAGTTTCTGA 685
Query 794 CATATGCGGTGATGAAGGAGAAGATTTACTGTTTGGATCTTACTCGCAATATTCATATTT 853
||||||||||||||||||||||||| ||||||||||||||| | ||||| |||||||||
Sbjct 686 CATATGCGGTGATGAAGGAGAAGATATACTGTTTGGATCTTTTTAGCAATGTTCATATTT 745
Query 854 ATGATCCTAAGGAAAGTAAATGGGAGTCTT-GGACTCATGGACCGTTGAGTGCTTCTTGG 912
||||||| |||||||||||||||||||||| || || |||| |||||||| || ||||
Sbjct 746 ATGATCCCAAGGAAAGTAAATGGGAGTCTTGGGTTTC-TGGAGCGTTGAGTTATTTTTGG 804
Query 913 AATGATTCGTCTTGTGTGGTTGATAATTTGCTGTTTTGCATCAATAC-ATCAGTGTATTT 971
|||||||||||||||||| ||||||||||||||||||||| ||||| || |||| ||
Sbjct 805 AATGATTCGTCTTGTGTGATTGATAATTTGCTGTTTTGCAAGAATACAAT-AGTGCGGTT 863
Query 972 CCTTGGAT---GGCCAATAAAAATATATGATCCAGAGAAGAAGACTTGGT-TTTACTTGC 1027
|| ||||| ||||| |||||||||||||||||||| |||| ||||| ||| ||||
Sbjct 864 CCATGGATGGCGGCCAGTAAAAATATATGATCCAGAGCGGAAGGTTTGGTGTTT-CTTGG 922
Query 1028 AAGGTTTACAAGGTTTTCCAGCTAATGGTCTCTTTGTGGATGGATATAAAATGGCTAATT 1087
||||||||||||||||||||| || | ||||| | |||| || ||||||||||||||
Sbjct 923 AAGGTTTACAAGGTTTTCCAG--AA-AATATCTTTCTCGATGAATGTAAAATGGCTAATT 979
Query 1088 TTGGCGGGAAGTTGGTGATTTTGAGCGCTGATGTGCA-CCGGCTTAGGCGGTATGACTGT 1146
|||| ||||||||| |||||||| ||||||||||| | |||| ||||| || ||||| ||
Sbjct 980 TTGGTGGGAAGTTGCTGATTTTGGGCGCTGATGTG-AGCCGGATTAGGGGGAATGACGGT 1038
Query 1147 AGGAAAAGAGAGATTTGGTGCATAGAGATTGCTTGGGAAAGAAAGGAAGATGGTACATTT 1206
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1039 AGGAAAAGAGAGATTTGGTGCATAGAGATTGCTTGGGAAAGAAAGGAAAATGGTAGATTT 1098
Query 1207 TGGGGGAAGGTCGAATCAGTGGCGGTTGTGCTTACACCAGCAAAGACGACTTCTGTTGA- 1265
|||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||
Sbjct 1099 TGGGGGAAGGTCGAATCAGTCGCGGTTGTGCTTACACCAACAAAGACGTCTTCTGTTGAT 1158
Query 1266 CA-TTTGTGGAACTGTTACGGT 1286
| ||||| |||||||||||||
Sbjct 1159 CCCTTTGTAGAACTGTTACGGT 1180
Score = 132 bits (71), Expect = 8e-30
Identities = 83/89 (93%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 595 CACGAGTATCGCTCCCTCCCGAGTATGAAGATGGCTCGCTGTCGCGCAGCCGCGGGTGTA 654
|||||||||||||| ||||| ||||||||| |||||||||| || |||||||| ||||||
Sbjct 532 CACGAGTATCGCTCGCTCCCTAGTATGAAGGTGGCTCGCTGCCGTGCAGCCGCAGGTGTA 591
Query 655 ATTGACGGAAAGATTTATGTGATCGGAGG 683
|||||||||||||||||||||||||||||
Sbjct 592 ATTGACGGAAAGATTTATGTGATCGGAGG 620
> Ahg481897 jgi|Araly1|481897|fgenesh2_kg.4__957__AT2G29780.1
Length=1435
Score = 63.9 bits (34), Expect = 3e-09
Identities = 55/64 (86%), Gaps = 5/64 (8%)
Strand=Plus/Plus
Query 1 ATGGTTTTAATCTCTGAAACTTCCGACGACGGCTCTA-CTGGCGGCGATCATCAAATCAA 59
|||| | |||||||||||||||||||||||||||||| | || |||| | | |||| |||
Sbjct 1 ATGGCTATAATCTCTGAAACTTCCGACGACGGCTCTAAC-GGTGGCG-T-ACCAAA-CAA 56
Query 60 GAAA 63
||||
Sbjct 57 GAAA 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48225490005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5