BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21690.1
Length=354
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481035 jgi|Araly1|481035|fgenesh2_kg.4__95__AT2G21690.1 220 4e-57
> Ahg481035 jgi|Araly1|481035|fgenesh2_kg.4__95__AT2G21690.1
Length=330
Score = 220 bits (119), Expect = 4e-57
Identities = 224/271 (83%), Gaps = 21/271 (8%)
Strand=Plus/Plus
Query 1 ATGGCTACAAATGTTGAATACACTTGCTTTGTTCGTGGTCTTGATCAGGACACCGATGAA 60
|||||| |||||||||||| |||||||||||||||||||||||||||| |||| |||| |
Sbjct 1 ATGGCTTCAAATGTTGAATTCACTTGCTTTGTTCGTGGTCTTGATCAGAACACTGATGGA 60
Query 61 AAAGATCTTACGGATATATTTTCAAAGTTTGGCAACGTGATCGATTCTAAAATCATTTAC 120
|| ||||||| | | ||||||||||||||||||||| ||| ||| || |||||
Sbjct 61 AACGATCTTAAGAACATATTTTCAAAGTTTGGCAAC---ATC-ATT-TACGATCAT---- 111
Query 121 GATCGTGACACTGGAAAGTCAAGAAGATTCGGATTTGTTACTTTCGAGGAGGAAAAATCT 180
| | | || |||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 112 G-T-G--AC--TGGAAAATCAAGAAGATTTGGATTTGTTACTTTCGAGGAGGAGAAATCC 165
Query 181 ATGACAGATGCCATTATG-ATTATGGACG-TGGA-AGAGTCTCGAAGTAAATGTGTTAAT 237
|||| ||||||||||| | | ||| | | | | | ||||||| || |||||||| |||
Sbjct 166 ATGAGAGATGCCATTAAGGAA-ATGAATGATT-ATA-AGTCTCGCAGCAAATGTGTCAAT 222
Query 238 GTTGGATCCATCACTGTGGAAGTAGCTAGGC 268
||||||||||||| ||||||||| |||||||
Sbjct 223 GTTGGATCCATCATTGTGGAAGTGGCTAGGC 253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12591344370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5