BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21710.1
Length=2037
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481036 jgi|Araly1|481036|fgenesh2_kg.4__96__AT2G21710.1 2907 0.0
> Ahg481036 jgi|Araly1|481036|fgenesh2_kg.4__96__AT2G21710.1
Length=1978
Score = 2907 bits (1574), Expect = 0.0
Identities = 1870/2008 (93%), Gaps = 39/2008 (2%)
Strand=Plus/Plus
Query 1 ATGCTTCTCCACTGCAACGTTAGCTACTACACCTCAACGTTTTCCTTCATCTCCTCATCT 60
||||||| |||||||||||| | | |||||||||| |||||||| |||||||||| |||
Sbjct 1 ATGCTTCGCCACTGCAACGTCA-C--CTACACCTCATCGTTTTCCCTCATCTCCTCCTCT 57
Query 61 CTCCGCCGTCAAGACAACGCCGACGATTCACAAGATACAGTAATCCGTCGCCGCCACAAT 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 58 CTCCGCCGCCAAGACAACGCCGACGATTCACAAGATACAGTAATCCGTCGCCGGCACAAT 117
Query 121 GCTAGATCCATTTCTCTATACATCCGCCATAATCGAGACCTAAAGCTCAACAAAAACCCT 180
||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 118 GCTAGATCCCTTTCTCTATACATCCGCCATAACCGAGACCTAAAGCTTAACAAAAACCCT 177
Query 181 AACGAATCTCAAGAAACCTTTGTtcctcctcctcctcctccGCGGCGAGAT-TTAGACGG 239
||||||||||||||| || ||| | |||||||||||||||||||||| || |||||
Sbjct 178 AACGAATCTCAAGAATCC----TTCGT--TCCTCCTCCTCCGCGGCGAGATATT-GACGG 230
Query 240 TGAAAACCGATCCAAGCTACTTGAGCTCTCTCTTGTAACTAGAAGAACTCCACAATTTCC 299
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TGATGACCGATCGAAGCTACTTGAGCTCTCTCTTGTAACTAGAAGAACTCCACAATTTCC 290
Query 300 TGGTTCAATCTACGCTCAATCTGCTTCTGATGCTGATATTGCTTCTTCTCTTCCTTCGCT 359
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 291 TGGTTCAATCTACGCTCAATCTGCTTCTGATGCTGATGTTGCTTCTTCTCTTCCTTCGCT 350
Query 360 TCGTAATTTTCTCGGCTCTGATGGTGATGATGATGGAGAGAGTGAGAGGGAGATGATAGT 419
|||||| ||||| || |||||||||||||| || |||||||| ||||| |||||||||||
Sbjct 351 TCGTAAATTTCTTGGGTCTGATGGTGATGACGACGGAGAGAGCGAGAGAGAGATGATAGT 410
Query 420 TAAAGCGCTTGAGATTAGAAGGAAAGTGACGAAAGAGATTATCAAAGAGTCTTTGGTTAG 479
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 411 TAAAGCGCTTGAGATTAGGAGGAAAGTGACGAAAGAGATTATCAAAGAGTCTTTGGTGAG 470
Query 480 GAAAGGTAGATTTGGGATTACGTATGCGACTAATGTCACTGATCGTTTGGGTGATTTCGT 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 471 GAAAGGTAGATTTGGGATTACGTATGCGACTAATGTGACTGATCGTTTGGGTGATTTCGT 530
Query 540 TGATCATGTTATGATTCAAGCTGCGGCGTTGAAACGGTTGCCGGAATTTTCAGAGTCTAG 599
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct 531 TGATCATGTTATGATTCAAGCTGCGGCGTTGAAGCTGTTGCCGGAATTTTCAGAGTCGAG 590
Query 600 ATTCAATCTTCGCGCTAGGACGGTTATTGAAGACTCCAATTTCGTTCCTCTTGTAAGGTG 659
||||||||||| || ||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 591 GTTCAATCTTCGTGCCAGGACTGTTATAGAAGACTCCAATTTCGTGCCTCTTGTAAGGTG 650
Query 660 GTTGAAGCACCATGAGTTGTCATATAATAGAATAGCGAAGATCATATGCATGTCAAAAGG 719
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 651 GTTGAAGCACCATGAGTTTTCATATAATAGAATTGCGAAGATCATATGCATGTCAAAAGG 710
Query 720 AAATCTCGACTCCATAAGGATCATGATCGAGTGGCTGAAGAGCATTCATGTGAAGGGTGA 779
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 711 AAATCTTGACTCCATAAGGATCATGATCGAGTGGCTGAAGACCATTCATGTGAAGGGTGA 770
Query 780 ATTCATTGCAGTTGCGTTCTTGAGATCTGGGGATAATATATTGCAACGTAACCGTGAGGA 839
|||||||| |||||||||||||||||||||||| || || |||||||||| ||||| ||
Sbjct 771 ATTCATTGGAGTTGCGTTCTTGAGATCTGGGGACAACATCTTGCAACGTAGTCGTGAAGA 830
Query 840 ACTAAACGAAATTGTTGAGTATCTAGAGAGCAATGGTGTGAGGAGGGATTGGATGGGTTA 899
||| |||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 831 ACTGGACGAGATTGTTGAGTATCTTGAGAGCAATGGTGTGAGGAGGGATTGGATGGGATA 890
Query 900 TGTGGTTGGAAGATGTCCTGAGTTGCTGTCTTTCAGCATGGAAGAAGTGAAAAGCCGTGT 959
||| ||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||||
Sbjct 891 TGTTGTTGGGCGATGTCCGGAGTTGTTGTCTTTTAGCATGGAAGAAGTGAAAAGCCGTGT 950
Query 960 TGATTTCTTCTTGAAAATGGGTATGAATCAGAATGACTTTGGCACTATGGTCTATGATTA 1019
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 951 TGATTTCTTCTTGAAAATGGGTATGAATCAGAATGACTTTGGCACGATGGTTTATGATTA 1010
Query 1020 TCCAAAGATAATTGGCTTCTTCTCATTCCAAGTGATGGAGAAAAAGATCAATTACCTGAA 1079
|||||||||| |||| | |||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1011 TCCAAAGATACTTGGGTACTTCTCATTCGAAGAGATGGAGAAAAAGATCAATTACCTGAA 1070
Query 1080 AGAGTTTGGCCTTAGCACAGAAGAAGTTGGGAGACTATTAGCCTACAAGCCACACCTAAT 1139
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1071 AGAATTTGGCCTTAGCACAGAAGAAGTTGGGAGACTATTAGCCTTCAAGCCACACCTCAT 1130
Query 1140 GGGATGCAGTATTGAAGAAAGATGGAAGCCTCTAGTCAAATATTTCTACTACCTTGGAAT 1199
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1131 GGGATGCAGTATTGAAGAAAGGTGGAAGCCTCTAGTCAAATATTTCTACTACCTTGGAAT 1190
Query 1200 CCCCAAAGAAGGAATGAAAAGAATCCTTGTCGTGAAACCAATTCTTTACTGCATTGATTT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CCCCAAAGAAGGAATGAAAAGAATCCTTGTCGTGAAACCAATTCTTTACTGCATTGATTT 1250
Query 1260 GGAGAAGACGATCGCCCCAAAGGTAAGATTTTTGCAGGAGATGGGTATCCCTAATGAAGC 1319
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1251 GGAGAAGACAATCGCCCCAAAGGTAAGATTTTTGCAAGAGATGGGTATCCCTAATGAGGC 1310
Query 1320 CATTGGAAACATGTTAGTAAAGTTTCCTTCTTTACTTACAAATAGCCTCTACAAGAAAAT 1379
|||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 1311 CATTGGAAACATGTTAGTAAAGTTTCCTTCCTTACTCACAAACAGCCTCTACAAGAAAAT 1370
Query 1380 CCGACCTGTGGTGATTTTTCTCTTAACCAGAGCCGGAGTAACCCAAAAGGATATCGGTAA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 CCGACCTGTGGTGATTTTTCTCTTAACCAGAGCCGGAGTAACCCAAAAGGATATCGGTAA 1430
Query 1440 AGTTATAGCAATGGATCCAGCTCTCCTTGGATGCAGCATAGGGACGAAGCTAGAACCCAA 1499
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1431 AGTTATCGCAATGGATCCAGCTCTCCTTGGATGCAGCATAGGGACAAAGCTAGAACCCAA 1490
Query 1500 CATGAGATACTATATATCATTGGGAATTCGATTTTATCAACTAGGCGAAATGATTGCTGA 1559
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1491 CATGAGATACTATATATCATTGGGTATTCGATTTCATCAACTAGGCGAAATGATTGCTGA 1550
Query 1560 TTTCCCGATGCTGCTTCGGTATAACGTTGATAATCTGCGCCCAAAATACCGTTACTTGCG 1619
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1551 TTTCCCGATGCTGCTTCGTTATAACGTTGATAATCTGCGTCCAAAATACCGTTACTTGCG 1610
Query 1620 AAGAACAATGATCCGTCCGCTTCAAGATCTCATAGAGTTTCCCAGATTTTTTAGCTACTC 1679
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1611 AAGAACAATGATCCGTCCGCTTCAAGATCTCATTGAGTTTCCCAGATTCTTTAGCTACTC 1670
Query 1680 ACTAGAGCGTCGGATAATCCCAAGGCACACCATTATGGTTGAGAACAGAGTTAACTTCAA 1739
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 ACTGGAGCGTCGGATAATCCCAAGGCACACCATTATGGTTGAGAACAGAGTTAACTTCAA 1730
Query 1740 GCTCAGATACATGTTGGCTTGTACGGATGAagagtttgagaggagagtgagagataaagt 1799
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1731 GCTCAGATACATGTTGGCTTGTACGGATGAAGAGTTTGAGAGGAGAGTTAGAGATAAAGT 1790
Query 1800 ggagagaagagagagaTTCGAAGCTGGCCTCGACTCTGAGGATTCTCAACCGTCGGATGA 1859
||||||||||||||||||||||||||| || ||||| |||||||| | | ||||
Sbjct 1791 GGAGAGAAGAGAGAGATTCGAAGCTGGTCTTGACTCCGAGGATTC------G--GAATGA 1842
Query 1860 GAACATC-TCCGATCAGGAGATTGCTTTCTCAGACGAAGCGGAAGAAGAA-GA-G-G-AT 1914
||||||| || ||| ||||||||| |||||||||| ||||||||||| || | | ||
Sbjct 1843 GAACATCATC-GATAAGGAGATTGATTTCTCAGACTCTCCGGAAGAAGAATGAAGAGGAT 1901
Query 1915 TT-GACAGAATGAAGAGGATT-TAGCATAATGAATAGTTCT-GTACAGTTTAACACAATT 1971
|| | || |||||| || || | | || | |||| || |||||||| |||||||||
Sbjct 1902 TTAG-CATAATGAATAG--TTCT-G--TAC--A-TAGT-CTTGTACAGTT-AACACAATT 1950
Query 1972 ATAAACGAACGAATGTGTGAATGAGTCT 1999
|||||||||||||||||| ||| |||||
Sbjct 1951 ATAAACGAACGAATGTGTCAATTAGTCT 1978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76599482695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5