BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21720.1
Length=2205
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481037 jgi|Araly1|481037|fgenesh2_kg.4__97__AT2G21720.1 2492 0.0
> Ahg481037 jgi|Araly1|481037|fgenesh2_kg.4__97__AT2G21720.1
Length=2117
Score = 2492 bits (1349), Expect = 0.0
Identities = 1543/1636 (94%), Gaps = 15/1636 (1%)
Strand=Plus/Plus
Query 1 ATGATTCTCAGTTTTCGGCTATTTGCATGGGAGTGCCACGTGGCATGTGGAGAAGTTGCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATTCTCAGTTTTCGGCTATTTGCATGGGAGTGCCACGTGGCATGTGGAGAAGTTGCC 60
Query 61 AGTGAACGAGTTATTCTCTCTACCTCAACGTCACTAAAACCGAATGCGaaaagga-a-aa 118
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 61 AGTGAACGAGTTATTCTCTCTACCTCAACGTCACTAAAACCGAATGCGAAAAGAATACAA 120
Query 119 a-aaatagcaaaagca-a-aaaactaaaaCAGAGGATTCTCAGAGATCACGAGAGCAAGA 175
| |||||||||||||| | |||| |||||||||||||||||||||||||||||| ||||
Sbjct 121 ACAAATAGCAAAAGCAGAGAAAAAAAAAACAGAGGATTCTCAGAGATCACGAGAGGAAGA 180
Query 176 A-AA--CGATGAGGAAGATGAAGCACTTGTCCTCCATTGCAAACGATGTCGTTCAGAGAT 232
| || |||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 181 AGAAGACGATGAGGAAGATGAAGCACTTGTCCTCCATTGCCAACGACGTCGTTCAGAGAT 240
Query 233 GCTCACAGGAACTAGAGACAACCATTGATGATTTAGTGAAAGAATTTGAATGTCAATGGA 292
||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||
Sbjct 241 GCTCACAGGAACTAGAGACAACCATTGATGAATTAGTGGAAGAGTTTGAATGTCAATGGA 300
Query 293 AGCCAGGAAGCACGGGAGGTACTTACTCGAAGAAGTTTGTGGAATTTTGCAACTCAAAGG 352
|||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGCCAGGAAGTACGGAAGGTTCTTACTCGAAGAAGTTTGTGGAATTTTGCAACTCAAAGG 360
Query 353 TGACGAGTCGGGTTTGTGAAAACATACTTGAGAGAATAAAAGATGGTTCCTTTA-CACGT 411
| |||||||||||||||||||||||||||||||| |||||||| ||||| |||| | |||
Sbjct 361 TTACGAGTCGGGTTTGTGAAAACATACTTGAGAGGATAAAAGACGGTTCGTTTAGC-CGT 419
Query 412 CTCACGTTCGATATGATGCTTGCGTGGCAACAACCTGACGCAGATGATAATGAGTCTTAT 471
||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 420 CTCACGTTCGATATGATGCTTGCTTGGCAACAACCTGACGCAGATGACAAGGAGTCTTAT 479
Query 472 AAGGAAGCAGTAGGTAAAGAGAGTGAAGACAAGAGGATTCAAGCAACTTTATCCCCAGAG 531
| |||||||||||| |||||||||||||||||||||||||| |||||| |||| ||||||
Sbjct 480 AGGGAAGCAGTAGGGAAAGAGAGTGAAGACAAGAGGATTCAGGCAACTCTATCTCCAGAG 539
Query 532 CAAGATGACATCTCGCTTTTTTATTCAGACATGATGCCGCTTCTCGTTGATCATGAACCA 591
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAAGATGACATCTCTCTTTTTTATTCAGACATGATGCCGCTTCTCGTTGATCATGAACCA 599
Query 592 AGTGTGGGTGAAGATGCTTTTGTCTATTTAGGCTCAATCATTCCTCTTCCCGTGGATATC 651
|||||||||| |||||| ||||| |||||||||||| |||||||||| ||||||||| ||
Sbjct 600 AGTGTGGGTGCAGATGCATTTGTTTATTTAGGCTCAGTCATTCCTCTACCCGTGGATGTC 659
Query 652 ATCAACGGAAGATACACATTTGAGACTCTAACTGCTCCGACCGG-TCACCAACTTCACTT 710
||||| ||||||||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct 660 ATCAATGGAAGATACACATTTGAGACTCTAACTGCTCCGACAGGCT-ACCAACTTCACTT 718
Query 711 CCCAGCTTATGATATGTTTGTCAAAGAAATACACAAGTGTATGAAGCATTTGCAAAAGCA 770
|| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TCCGGCTTACGATATGTTCGTCAAAGAAATACACAAGTGTATGAAGCATTTGCAAAAGCA 778
Query 771 ATCGACGCCTAAAGGGATCGAATTAGCGGATGATGAAATTATATTGCACGTTGAAGGAAC 830
| ||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 779 AGCGAAGCCTAAAGGGGTCGAATTGGCGGATGATGAAATTATATTGCACGTTGAAGGAAC 838
Query 831 AATGGCTTCACAGAGAGTGATTCGCCACATTAAAGAAACAAGCTGGCCAGGTAGGCTTAC 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AATGGCTTCACAGAGAGTGATTCGCCACATTAAAGAAACAAGCTGGCCAGGTAGGCTTAC 898
Query 891 TTTGACAAACTATGCACTATACTTCGAAGCCGCGGGAATTATAAACTATGAAGATGCTAT 950
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 899 TTTGACAAACTATGCACTATACTTCGAAGCCGCAGGAATTATAAACTATGAAGATGCTAT 958
Query 951 AAAGATAGATCTTTCTAAGGACAATGAAAAGTCTACAAAGCCTATGTCCACTGGTCCATT 1010
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TAAGATAGATCTTTCCAAGGACAATGAAAAGTCTACAAAGCCTATGTCCACTGGTCCATT 1018
Query 1011 GGGTGCTCCTCTTTTTGACAAGGCCATTGTCTACGAGTCTCCAGATTTTGAGGAGGGAAT 1070
||||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||
Sbjct 1019 GGGTGCTCCTCTTTTTGACAACGCCATTGTCTACGAGTCTCCGGAATTTGAGGATGGAAT 1078
Query 1071 AGTCATAGAGTTTCCGGAGATGACAAGCTCAACGAGACGAGATCATTGGCTTATGCTTGT 1130
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1079 TGTCATAGAGTTTCCAGAGATGACAAGCTCAACGAGACGAGATCACTGGCTTATGCTTAT 1138
Query 1131 AAAAGAAATAACATTAATGCACAAGTTCTTGAGGAAATTCAATGTTGAGTCTCCCTTGCA 1190
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1139 AAAGGAAATAACATTAATGCACAAGTTCTTGAGGAAATTTAATGTTGAGTCTCCCTTGCA 1198
Query 1191 ATCATGGGAAATCCATTCAAGAACAATCTTGGGAATAATACGGTTGCACGCAGCCCGCGA 1250
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1199 AGCATGGGAAATCCATTCAAGAACAATCTTGGGAATAGTACGGTTGCACGCAGCCCGCGA 1258
Query 1251 GATGTTAAGAATTTCTCCCCCGGATCCAAAAAACTTTTTAATATTTAGTTTGTTTGAGGA 1310
||| | ||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 1259 AATGCTGAGAATCTCTCCCCCGGATCCAAAAAAGTTTTTAATATTTAGTTTATTTGAAGA 1318
Query 1311 AGTTCCAAAGGGAGACTATGTACTTGAGGAGCTCGCAGAGATTAGTCTAAAGATAGGCAC 1370
||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1319 AGTCCCAAAGGGAGACTACGTACTTGAAGAGCTCGCAGAGATTAGTCTAAAGATAGGCAC 1378
Query 1371 TACCAGAAACCCGTGTAGTGCTAGCTCCATATTGAGGAATATGAACATGGATCAGCTTGG 1430
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TACAAGGAACCCGTGTAGTGCTAGCTCCATATTGAGGAATATGAACATGGATCAGCTTGG 1438
Query 1431 TGACATGATAAAAGAAGAGGGTGAAGATATATGCAAGGAGAAGGTGGTCAAAGTGACTGA 1490
||||||||||||||||||||| ||||||| ||| |||||||||||| |||||||||||
Sbjct 1439 TGACATGATAAAAGAAGAGGGAGAAGATACATGTAAGGAGAAGGTG---AAAGTGACTGA 1495
Query 1491 TAAAGAAGAAATGCTTGCGTCTCTTGAGAGTGCAGTGAATCAATCTAGAGAAGAGGGAAA 1550
|||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1496 TAAAGAGGAAATGCTTGCGTCTCTTGAAAGTGCAGTGAATCAATCGAGAGAAGAGGGAAA 1555
Query 1551 GGTTATTGAAAAGGCTAGAGCCACGACAGCGGAACTCGAAGAAGAAGGGATTAGTGAAAG 1610
||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1556 GGTTATTGAGGAGGCTAAAGCCACGACAGCGGAGCTCGAAGAAGAAGGGATTAGTGAAAG 1615
Query 1611 TGTAGCAGTTCTTATG 1626
||||||||||||||||
Sbjct 1616 TGTAGCAGTTCTTATG 1631
Score = 721 bits (390), Expect = 0.0
Identities = 445/472 (94%), Gaps = 2/472 (0%)
Strand=Plus/Plus
Query 1735 TACAAGGAGTGGGTTGGTAAGGCTATAGCTGCTTGCTTAATATGGGTGGTGGCAAAAATG 1794
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1647 TACAGGGAGTGGGTTGGTAAGGCTATAGCTGCTTGCTTAATATGGGTGGTGGCAAAAATG 1706
Query 1795 GCTCAAGCTAGAAATAAGATGGTCCATACAAAAAGTGAGGATGCGGTAACAGTGAGCACT 1854
||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct 1707 GCTCAGGCTAGAAATAAGACGGTCCACACAAAAAGTGAAGATGCGGTAACAGTGAGCACT 1766
Query 1855 GAATCTGACCAAACAGTGACTGAGAGCATTGTGTCTGCTCAATATGGCTTAATTAGACTT 1914
||||||||||||||| |||| |||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1767 GAATCTGACCAAACAATGACCGAGAGCATTGTGTCGGCTCAGTATGGCTTAATAAGACTT 1826
Query 1915 CACCAGTTGATGCAACATGTTAACGTCACCATCTTGAAATTGCGGTCTC-TATATACCTC 1973
|| ||||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||
Sbjct 1827 CATCAGTTGATGCAACATGTCAACGTCACCATCCTGAAATTGCGGTC-CATATATACCTC 1885
Query 1974 CAAGGCTAGCAAGCATGCAAGCATGGTGATGGCGTTGATGCTAGTGTTGGCGAGCTTCTT 2033
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1886 CAAGGCTAGCAAGCATGCAAGCATGGTGATGGCATCGATGCTAGTGTTGGCGAGCTTCTT 1945
Query 2034 CGCAGTGGTGCCGTTCAAGTTGTTCATAATATTTGGTATAGTATATTGCTTTGTAATGAC 2093
|||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1946 CGCAGTGGTGCCATTCAAGTTGTTCATAATATTTGGTACAATATATTGCTTTGTAATGAC 2005
Query 2094 ATCAAGCGTCGGAACATACATGAGCAACGATCAGAGTAACCGGAGAATGAAAGAGTGGTG 2153
||| || ||||||| |||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 2006 ATCGAGTGTCGGAAGATACATGAGCAATGATCAGAGCAACCGGAGAATGAAAGAGTGGTG 2065
Query 2154 GGATTCCATACCCATTGTTCCCGTTCGTGTACGTAACGCTTCGTCCAAGTAG 2205
|||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 2066 GGATTCCATACCCATTGTACCCGTTCGTGTGCGTAACGCTTCGTCCAAGTAG 2117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82998643855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5