BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G21725.1

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg899444 jgi|Araly1|899444|Al_scaffold_0004_94                      387    3e-107


> Ahg899444 jgi|Araly1|899444|Al_scaffold_0004_94
Length=258

 Score =  387 bits (209),  Expect = 3e-107
 Identities = 230/240 (96%), Gaps = 2/240 (1%)
 Strand=Plus/Plus

Query  1    ATGAAAAGCGAGAAATCTGCAGATGCTTATGGAACATATTTTCTTCTAATATCAACCATT  60
            ||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGAAAAGCAAGAAATCTTCAGATGCTTATGGAACATATTTTCTTCTGATATCAACCATT  60

Query  61   TTCTTGCTTTTCAT-TGCACGACAAGCAAGTTCGTACCAAATGCTCATATGTTTAGATCT  119
            |||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||
Sbjct  61   TTCTTGCTTTTCATCT-CACGACAAGCAAATTCGTACCAAATGCTCATATGTTTAGATCT  119

Query  120  AAATATATCATGTGCCGACTGCCAAAAACAGTGCGACGAGACAAGTTATGGAGGAATGTG  179
            |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct  120  AAATATATCATGTGCCGAGTGCAAAAAACAGTGCGACGAGACAAGTTATGGAGGAATATG  179

Query  180  TTTAAATGGAGGCAGAACTTGTTGTTGCaaaaaaaGTCCTCCGCCATCATATTATGATCC  239
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  180  TTTAAATGGAGGCAGAACTTGTTGTTGCAAAAAAAGTCCTCCACCATCATATTATGATCC  239



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8974241335


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5