BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G21740.1 Length=378 Score E Sequences producing significant alignments: (Bits) Value Ahg932117 jgi|Araly1|932117|scaffold_400105.1 516 5e-146 Ahg932118 jgi|Araly1|932118|scaffold_400106.1 335 1e-91 Ahg490711 jgi|Araly1|490711|fgenesh2_kg.7__144__AT4G39340.1 204 4e-52 > Ahg932117 jgi|Araly1|932117|scaffold_400105.1 Length=418 Score = 516 bits (279), Expect = 5e-146 Identities = 346/379 (91%), Gaps = 2/379 (1%) Strand=Plus/Plus Query 1 ATGGCTTC-TAACACAAGTTTCCTCTTTGCCACCATCGCTATCCTCCTCGTTCTCAACAT 59 |||||||| | |||||||||||||| |||||| | ||||| | |||||||| ||||| || Sbjct 21 ATGGCTTCGT-ACACAAGTTTCCTCGTTGCCATCGTCGCTCTTCTCCTCGTGCTCAATAT 79 Query 60 CTCCGGAAGAACTCTCCCGGAGACGGAAGATTCCACAAACATAGCGGCAAGACTCAACGG 119 |||||| ||||||||||||||||||| ||||||||| |||||||||||| | |||||||| Sbjct 80 CTCCGGCAGAACTCTCCCGGAGACGGCAGATTCCACCAACATAGCGGCACGGCTCAACGG 139 Query 120 AGGAGGACTAATGGAGTGTTGGAACGCACTTTATGAGCTCAAATCATGCACCAACGAAAT 179 ||||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||| Sbjct 140 AGGAGGATTAATGGAGTGTTGGAACGCACTGTACGAGCTCAAATCATGCACAAACGAAAT 199 Query 180 CGTTCTCTTCTTCCTCAACGGTGAAACCAAACTCGGCGTCGATTGCTGTCAAGCCGTCGA 239 |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 200 CGTTCTGTTCTTCCTCAACGGCGAGACCAAACTCGGCGTCGATTGCTGTCAAGCCGTCGA 259 Query 240 GGTCATCACCACCGATTGTTGGCCTGCGATGCTCACGTCTCTAGGCTTTACCTCTGATGA 299 ||||||||||| ||||||||||| |||||| | || ||||| ||||||||||||||||| Sbjct 260 AGTCATCACCACTGATTGTTGGCCGGCGATGTTAACTTCTCTTGGCTTTACCTCTGATGA 319 Query 300 AACCAACGTTCTTCGTGGTTTCTGTCAATCTCCAAATTCCGGTGGTTCTTCTCCGGCGCC 359 ||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||| Sbjct 320 AACCAACGTTCTTCGCGCCTTCTGTCAATCTCCAAATTCCGGTGGTTCTTCGCCGGCGCC 379 Query 360 TTCCTCTGTGAAACTTTGA 378 |||||| |||||||||||| Sbjct 380 TTCCTCGGTGAAACTTTGA 398 > Ahg932118 jgi|Araly1|932118|scaffold_400106.1 Length=418 Score = 335 bits (181), Expect = 1e-91 Identities = 307/369 (83%), Gaps = 4/369 (1%) Strand=Plus/Plus Query 1 ATGGCTTCTAACACAAGTTTCCTCTTTGCCACCATCGCTATCCTCCTCGTTCTCAACATC 60 |||||||||||||||||||||||||||| |||| || || | ||||| | |||||| || Sbjct 21 ATGGCTTCTAACACAAGTTTCCTCTTTGTCACCGTCACTCTTCTCCTTGCCCTCAACGTC 80 Query 61 TCCGGAAGAACTCTCCCGGAGACGGAAGATTCCACAAACATAGCGGCAAGACTCAACGGA 120 || || |||| ||||||| | || |||||||| ||||| |||||||| || | |||| Sbjct 81 TCTGGCCGAACACTCCCGGTGGTGGCGGATTCCACCAACATTGCGGCAAGGCTTACCGGA 140 Query 121 GGAGGACTAATGGAGTGTTGGAACGCACTTTATGAGCTCAAATCATGCACCAACGAAATC 180 |||||| | ||| |||||||| | ||||| || ||||| ||||||||||| || || ||| Sbjct 141 GGAGGATTGATGCAGTGTTGGGATGCACTCTACGAGCTGAAATCATGCACTAATGAGATC 200 Query 181 GTTCTCTTCTTCCTCAACGGTGAAACCAAACTCGGCGTC-GATTGCTGTCAA-GCCGTCG 238 ||||||||||| ||||||||||| |||||||||||| || | |||||| ||| || || | Sbjct 201 GTTCTCTTCTTTCTCAACGGTGAGACCAAACTCGGC-TCAGGTTGCTG-CAACGCTGTTG 258 Query 239 AGGTCATCACCACCGATTGTTGGCCTGCGATGCTCACGTCTCTAGGCTTTACCTCTGATG 298 | ||||| ||||| ||||||||||| |||||||| || ||||| |||||||| ||||| | Sbjct 259 ACGTCATAACCACTGATTGTTGGCCGGCGATGCTTACTTCTCTTGGCTTTACATCTGAGG 318 Query 299 AAACCAACGTTCTTCGTGGTTTCTGTCAATCTCCAAATTCCGGTGGTTCTTCTCCGGCGC 358 |||| ||||| || ||||||||||| || ||||| | |||||| |||||||||||||| | Sbjct 319 AAACAAACGTCCTCCGTGGTTTCTGCCAGTCTCCGACTTCCGGCGGTTCTTCTCCGGCTC 378 Query 359 CTTCCTCTG 367 ||||| ||| Sbjct 379 CTTCCCCTG 387 > Ahg490711 jgi|Araly1|490711|fgenesh2_kg.7__144__AT4G39340.1 Length=384 Score = 204 bits (110), Expect = 4e-52 Identities = 244/305 (80%), Gaps = 23/305 (8%) Strand=Plus/Plus Query 59 TCTCCGGAAGA-ACTCTCCCGGAGACGGAAGAT--TCCACAAACATAGCGGCAAGAC-TC 114 ||||||| ||| | |||||| | | ||| || | || || ||||||||||| || | || Sbjct 68 TCTCCGGCAGAGA-TCTCCC-G-G-CGG-AG-TCATCAACCAACATAGCGGCGAGGCTTC 121 Query 115 AACGGAGGAGGACTAATGGAGTGTTGGAACGCACTT-TATGAGCTCAAATCATGCACCAA 173 || | ||||| |||||||| || ||||||||| || || ||||| ||||| |||||||| Sbjct 122 AA-AGTGGAGGGCTAATGGAATGCTGGAACGCA-TTATACGAGCTGAAATCGTGCACCAA 179 Query 174 CGAAATCGTTCTCTTCTTCCTCAACGGTGAAACCAAACTCGGCGTC-GATTGCTGTC-AA 231 || ||||||||||||||||||||||||||||| ||||| ||||| | ||| || | || Sbjct 180 TGAGATCGTTCTCTTCTTCCTCAACGGTGAAACAAAACTTGGCGTTAG-TTGTTG-CGAA 237 Query 232 GCCGTCGAGGTCATCACCACCGATTGTTGGCCTGCGATGCTCACGTCTCTAGGCTTTAC- 290 |||||||| ||||||| ||| |||||||||| || |||||||| ||||| || ||||| Sbjct 238 GCCGTCGATATCATCACTACCAATTGTTGGCCGGCAATGCTCACTTCTCTCGGATTTACG 297 Query 291 CTCTGATGAAACCAACGTTCTTCGTGG-TTTCTGTCA-ATCTCCAAATTCCGGTGGTTCT 348 | |||| ||| |||| || |||||||| ||| ||||| | |||||| |||| | ||| Sbjct 298 C-CTGAGGAAGCCAATGTCCTTCGTGGCTTT-TGTCAGAA-TCCAAACTCCGACGACTCT 354 Query 349 TCTCC 353 ||||| Sbjct 355 TCTCC 359 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13507078506 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5