BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21740.1
Length=378
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932117 jgi|Araly1|932117|scaffold_400105.1 516 5e-146
Ahg932118 jgi|Araly1|932118|scaffold_400106.1 335 1e-91
Ahg490711 jgi|Araly1|490711|fgenesh2_kg.7__144__AT4G39340.1 204 4e-52
> Ahg932117 jgi|Araly1|932117|scaffold_400105.1
Length=418
Score = 516 bits (279), Expect = 5e-146
Identities = 346/379 (91%), Gaps = 2/379 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTC-TAACACAAGTTTCCTCTTTGCCACCATCGCTATCCTCCTCGTTCTCAACAT 59
|||||||| | |||||||||||||| |||||| | ||||| | |||||||| ||||| ||
Sbjct 21 ATGGCTTCGT-ACACAAGTTTCCTCGTTGCCATCGTCGCTCTTCTCCTCGTGCTCAATAT 79
Query 60 CTCCGGAAGAACTCTCCCGGAGACGGAAGATTCCACAAACATAGCGGCAAGACTCAACGG 119
|||||| ||||||||||||||||||| ||||||||| |||||||||||| | ||||||||
Sbjct 80 CTCCGGCAGAACTCTCCCGGAGACGGCAGATTCCACCAACATAGCGGCACGGCTCAACGG 139
Query 120 AGGAGGACTAATGGAGTGTTGGAACGCACTTTATGAGCTCAAATCATGCACCAACGAAAT 179
||||||| |||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 140 AGGAGGATTAATGGAGTGTTGGAACGCACTGTACGAGCTCAAATCATGCACAAACGAAAT 199
Query 180 CGTTCTCTTCTTCCTCAACGGTGAAACCAAACTCGGCGTCGATTGCTGTCAAGCCGTCGA 239
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 200 CGTTCTGTTCTTCCTCAACGGCGAGACCAAACTCGGCGTCGATTGCTGTCAAGCCGTCGA 259
Query 240 GGTCATCACCACCGATTGTTGGCCTGCGATGCTCACGTCTCTAGGCTTTACCTCTGATGA 299
||||||||||| ||||||||||| |||||| | || ||||| |||||||||||||||||
Sbjct 260 AGTCATCACCACTGATTGTTGGCCGGCGATGTTAACTTCTCTTGGCTTTACCTCTGATGA 319
Query 300 AACCAACGTTCTTCGTGGTTTCTGTCAATCTCCAAATTCCGGTGGTTCTTCTCCGGCGCC 359
||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||
Sbjct 320 AACCAACGTTCTTCGCGCCTTCTGTCAATCTCCAAATTCCGGTGGTTCTTCGCCGGCGCC 379
Query 360 TTCCTCTGTGAAACTTTGA 378
|||||| ||||||||||||
Sbjct 380 TTCCTCGGTGAAACTTTGA 398
> Ahg932118 jgi|Araly1|932118|scaffold_400106.1
Length=418
Score = 335 bits (181), Expect = 1e-91
Identities = 307/369 (83%), Gaps = 4/369 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCTAACACAAGTTTCCTCTTTGCCACCATCGCTATCCTCCTCGTTCTCAACATC 60
|||||||||||||||||||||||||||| |||| || || | ||||| | |||||| ||
Sbjct 21 ATGGCTTCTAACACAAGTTTCCTCTTTGTCACCGTCACTCTTCTCCTTGCCCTCAACGTC 80
Query 61 TCCGGAAGAACTCTCCCGGAGACGGAAGATTCCACAAACATAGCGGCAAGACTCAACGGA 120
|| || |||| ||||||| | || |||||||| ||||| |||||||| || | ||||
Sbjct 81 TCTGGCCGAACACTCCCGGTGGTGGCGGATTCCACCAACATTGCGGCAAGGCTTACCGGA 140
Query 121 GGAGGACTAATGGAGTGTTGGAACGCACTTTATGAGCTCAAATCATGCACCAACGAAATC 180
|||||| | ||| |||||||| | ||||| || ||||| ||||||||||| || || |||
Sbjct 141 GGAGGATTGATGCAGTGTTGGGATGCACTCTACGAGCTGAAATCATGCACTAATGAGATC 200
Query 181 GTTCTCTTCTTCCTCAACGGTGAAACCAAACTCGGCGTC-GATTGCTGTCAA-GCCGTCG 238
||||||||||| ||||||||||| |||||||||||| || | |||||| ||| || || |
Sbjct 201 GTTCTCTTCTTTCTCAACGGTGAGACCAAACTCGGC-TCAGGTTGCTG-CAACGCTGTTG 258
Query 239 AGGTCATCACCACCGATTGTTGGCCTGCGATGCTCACGTCTCTAGGCTTTACCTCTGATG 298
| ||||| ||||| ||||||||||| |||||||| || ||||| |||||||| ||||| |
Sbjct 259 ACGTCATAACCACTGATTGTTGGCCGGCGATGCTTACTTCTCTTGGCTTTACATCTGAGG 318
Query 299 AAACCAACGTTCTTCGTGGTTTCTGTCAATCTCCAAATTCCGGTGGTTCTTCTCCGGCGC 358
|||| ||||| || ||||||||||| || ||||| | |||||| |||||||||||||| |
Sbjct 319 AAACAAACGTCCTCCGTGGTTTCTGCCAGTCTCCGACTTCCGGCGGTTCTTCTCCGGCTC 378
Query 359 CTTCCTCTG 367
||||| |||
Sbjct 379 CTTCCCCTG 387
> Ahg490711 jgi|Araly1|490711|fgenesh2_kg.7__144__AT4G39340.1
Length=384
Score = 204 bits (110), Expect = 4e-52
Identities = 244/305 (80%), Gaps = 23/305 (8%)
Strand=Plus/Plus
Query 59 TCTCCGGAAGA-ACTCTCCCGGAGACGGAAGAT--TCCACAAACATAGCGGCAAGAC-TC 114
||||||| ||| | |||||| | | ||| || | || || ||||||||||| || | ||
Sbjct 68 TCTCCGGCAGAGA-TCTCCC-G-G-CGG-AG-TCATCAACCAACATAGCGGCGAGGCTTC 121
Query 115 AACGGAGGAGGACTAATGGAGTGTTGGAACGCACTT-TATGAGCTCAAATCATGCACCAA 173
|| | ||||| |||||||| || ||||||||| || || ||||| ||||| ||||||||
Sbjct 122 AA-AGTGGAGGGCTAATGGAATGCTGGAACGCA-TTATACGAGCTGAAATCGTGCACCAA 179
Query 174 CGAAATCGTTCTCTTCTTCCTCAACGGTGAAACCAAACTCGGCGTC-GATTGCTGTC-AA 231
|| ||||||||||||||||||||||||||||| ||||| ||||| | ||| || | ||
Sbjct 180 TGAGATCGTTCTCTTCTTCCTCAACGGTGAAACAAAACTTGGCGTTAG-TTGTTG-CGAA 237
Query 232 GCCGTCGAGGTCATCACCACCGATTGTTGGCCTGCGATGCTCACGTCTCTAGGCTTTAC- 290
|||||||| ||||||| ||| |||||||||| || |||||||| ||||| || |||||
Sbjct 238 GCCGTCGATATCATCACTACCAATTGTTGGCCGGCAATGCTCACTTCTCTCGGATTTACG 297
Query 291 CTCTGATGAAACCAACGTTCTTCGTGG-TTTCTGTCA-ATCTCCAAATTCCGGTGGTTCT 348
| |||| ||| |||| || |||||||| ||| ||||| | |||||| |||| | |||
Sbjct 298 C-CTGAGGAAGCCAATGTCCTTCGTGGCTTT-TGTCAGAA-TCCAAACTCCGACGACTCT 354
Query 349 TCTCC 353
|||||
Sbjct 355 TCTCC 359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13507078506
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5