BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G21750.1

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932118 jgi|Araly1|932118|scaffold_400106.1                        505    1e-142


> Ahg932118 jgi|Araly1|932118|scaffold_400106.1
Length=418

 Score =  505 bits (273),  Expect = 1e-142
 Identities = 346/381 (91%), Gaps = 6/381 (2%)
 Strand=Plus/Plus

Query  1    ATGGCTTCTAACACAAGTTTCCTCTTTGTCACCGTCACTCTTCTCCTCGTTCTCAACGTC  60
            ||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||
Sbjct  21   ATGGCTTCTAACACAAGTTTCCTCTTTGTCACCGTCACTCTTCTCCTTGCCCTCAACGTC  80

Query  61   TCCAGCAGAGCACTCCCGCCCGTGGCGGATTCCACCAACATAGCGGCTAGACTAACCGGA  120
            ||  || || ||||||||   |||||||||||||||||||| ||||| || || ||||||
Sbjct  81   TCTGGCCGAACACTCCCGGTGGTGGCGGATTCCACCAACATTGCGGCAAGGCTTACCGGA  140

Query  121  GGAGGACTGATGCAGTGTTGGGATGCACTCTACGAGCTGAAGTCATGTACTAATGAGATC  180
            |||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct  141  GGAGGATTGATGCAGTGTTGGGATGCACTCTACGAGCTGAAATCATGCACTAATGAGATC  200

Query  181  GTTCTCTTCTTTCTCAACGGTGAGACCAAACTCGGCT-ACGGTTGCTGCAACGCCGTTGA  239
            ||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct  201  GTTCTCTTCTTTCTCAACGGTGAGACCAAACTCGGCTCA-GGTTGCTGCAACGCTGTTGA  259

Query  240  TGTCATTACCACTGATTGTTGGCCGGCGATGCTTACTTCTCTTGGCTTTACA-CTGGAGG  298
             ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct  260  CGTCATAACCACTGATTGTTGGCCGGCGATGCTTACTTCTCTTGGCTTTACATCTG-AGG  318

Query  299  AAACCAATGTCCTCCGTGGTTTCTGTCAATCTCCGAACT-CCGGCGGTTCTTCTCCAGCT  357
            |||| || ||||||||||||||||| || ||||||| || |||||||||||||||| |||
Sbjct  319  AAACAAACGTCCTCCGTGGTTTCTGCCAGTCTCCGA-CTTCCGGCGGTTCTTCTCCGGCT  377

Query  358  CTTTCCCCTGTCAAACTTTGA  378
            | |||||||| | || |||||
Sbjct  378  CCTTCCCCTGCCGAAGTTTGA  398



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13507078506


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5