BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21780.1
Length=634
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481043 jgi|Araly1|481043|fgenesh2_kg.4__103__AT2G21780.1 743 0.0
> Ahg481043 jgi|Araly1|481043|fgenesh2_kg.4__103__AT2G21780.1
Length=537
Score = 743 bits (402), Expect = 0.0
Identities = 505/552 (91%), Gaps = 17/552 (3%)
Strand=Plus/Plus
Query 13 CTCTACATGAACGATCCAATGGGAGAAACAGGATTTTCTAGAGAATCGGCGCCGGAGATC 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTACATGAACGATCCAATGGGAGAAACAGGATTTTCTAGAGAATCGGCGCCGGAGATC 60
Query 73 GTGTTCTCGGAGACGGATATGGCTGCGGCTGAGCAGCTTATGCATCTAAGCGAAGAAGAA 132
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 61 GTGTTCTCGGAGACGGATATGGCCGCGGCTGAGCAGCTTATGCAGCTAAGCGAAGAAGAG 120
Query 133 ACGGTTAGCTGTAGCAGCAGCACCGGCGGAGATTGCGGTGGCGGAGGCGGAGACAAGATA 192
||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||| |
Sbjct 121 ACGGTGAGCTGTAGCAGCAGCACCGGCGGAGATTGTGGCGGCGGAGGTGGAGACAAGACA 180
Query 193 AAGCATGAATATGTTAGCTCGAGAATCGGAAACGAGCTAAACGACGGCGTACGAGGAAAC 252
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 181 AAGCATGAATATGTTAGCTCGAGAATCGGACACGAGCAAAACGACGGCGTACGAGGAAAC 240
Query 253 TCTATTCTTGGCGTGGAGAAGAAGAGGAAGAGGACGGTGATGAAGGAAAAGAAGTTTCGA 312
||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 TCTATTCTTGGTGTGGAGAGGAAGAGGAAGAGGGCGGTGATGAAGGAAAAGAAGTTTCGA 300
Query 313 TCTCTTGAGAGTATTTACAAAGGGACGAAGGAGATTAGGGATTAATGGAGGAAAGGGATC 372
|| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 TCCCTCGAGAGTATTTACAAAGCAACGAAGGAGATTAGGGATTAATGGAGGAAAGGGATC 360
Query 373 GGAGAGATGGTTAATTATATATCGTTTGTTAATTACTTTTGTTAATCGATGTTAGTAACC 432
||||| ||||||||||| || || |||||||||||||||||||| |||||||||||
Sbjct 361 GGAGA--TGGTTAATTAT----CGCTTCTTAATTACTTTTGTTAATCGTTGTTAGTAACC 414
Query 433 TCTTCAATGGtttttttGGTGTGTGTGTATATTTCTAGTCCTTGCTTAATTTAACGTTGG 492
| |||||||| || || ||||||| ||| ||| ||||||| ||| |||||||||
Sbjct 415 TGTTCAATGGGCTTCTT--TGTGTGTATATGTTT--AGTCCTT----AATCTAACGTTGG 466
Query 493 AGCTGAA-AATTTGTGATAATAGTTTTTGGAGATTTTCAGATGA-AATCTGTAAATATTT 550
||||| | |||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 467 AGCTGGAGAATTTGTGATAATAGTTTTTGGAGATTTTCAGATTACAAT-TGTAAATATTT 525
Query 551 TGGTTCTCATAT 562
|||||| |||||
Sbjct 526 TGGTTCACATAT 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23216856453
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5