BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21800.2
Length=1872
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481045 jgi|Araly1|481045|fgenesh2_kg.4__105__AT2G21800.1 1744 0.0
> Ahg481045 jgi|Araly1|481045|fgenesh2_kg.4__105__AT2G21800.1
Length=1417
Score = 1744 bits (944), Expect = 0.0
Identities = 1250/1394 (90%), Gaps = 35/1394 (3%)
Strand=Plus/Plus
Query 282 AACAATTTTTTCGGTAAACGAGTTATATCTCTTGAATCGGATTCTGAAGACAGTC-CTGG 340
||||| |||| |||||||||||| ||||||||||| ||||||||||||||||| | || |
Sbjct 29 AACAAGTTTTCCGGTAAACGAGTAATATCTCTTGAGTCGGATTCTGAAGACAG-CTCTCG 87
Query 341 ACCTGAGAGTTCAAAAAAGTATGAACCTGTTTATACTGATTCTTGGAAGAAACCTTGTAG 400
||||| || |||||| ||||||||||| || || |||||||||||||| | |||||||
Sbjct 88 ACCTGGGACTTCAAAGAAGTATGAACCCGTGGATGCTGATTCTTGGAAGCAGCCTTGTAC 147
Query 401 ATTGGAATTTGGATCCAGTGATGCTAATTCTGATGATGATCCTAGTTGGATGCGGAGAGC 460
|||| ||| |||||||||||||||| |||||||||||||| |||| ||||||| | || |
Sbjct 148 ATTGAAATCTGGATCCAGTGATGCTGATTCTGATGATGATACTAGCTGGATGCAGCGACC 207
Query 461 TAGTTTTCAATCTTCGC-TGTCTAAAGATGCTATTGAGGTAGATTCTGACCATGAGAAAG 519
|||||||| |||| | | |||||||||| ||||||| |||||||||||||||||||||||
Sbjct 208 TAGTTTTCGATCTAC-CATGTCTAAAGAGGCTATTGGGGTAGATTCTGACCATGAGAAAG 266
Query 520 AAGATACAGGCGTTGAGAAGA-TGGGTCGAAAAAAGCAGACCATAACTTCTAAAAGTACA 578
|||||||| | |||||||| | || ||||| ||||||||| || || |||||||||||||
Sbjct 267 AAGATACAAGTGTTGAGAA-ATTGCGTCGACAAAAGCAGAGCAGAAGTTCTAAAAGTACA 325
Query 579 TCTCTTTCTGCTGATTCATTGCCTaaaaagaagatgtcaaaagatgaaaaaacccgcgcg 638
||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||| |||
Sbjct 326 TCTCTTTCTGCTGATGAATTGCCTAAAAAGCAGATGTCAAAAAATGAAAAAGTCCGAGCG 385
Query 639 gcagaggaaaagaagttaca-aaaagaacaagaaaaattacagaaagCTGCCTCGAAAGC 697
||||||||||||||||| | |||||||||||| |||||||| ||||| ||| |||||||
Sbjct 386 TCAGAGGAAAAGAAGTTA-AGAAAAGAACAAGAGAAATTACAAAAAGCCGCCACGAAAGC 444
Query 698 AGAAGATGCTGAGCATAAAAAGTTGGAGAGGGAAAAGCAGAAATGGGCAAAGGAAAAGGA 757
|||||||||||||||||||||||||||| |||||||||||||||||| |||| ||
Sbjct 445 TGAAGATGCTGAGCATAAAAAGTTGGAGAAGGAAAAGCAGAAATGGGC-----AAAA-GA 498
Query 758 TAAAGCACTTAAATGTATTGTTGCCTGGATTGACAATAAAGT-GCTTGAAGGATCTTTTG 816
||||| ||||||| |||||| |||| ||||||||||||| | | |||||| |||| ||
Sbjct 499 CAAAGCGCTTAAATCTATTGTCGCCTTGATTGACAATAAATTAG-TTGAAGAATCTGTT- 556
Query 817 GAGTTATTACAGGACTTCTCATTTCGGGATTGAAAGAGAAATGTATTACATACCATGTCA 876
| | ||||| |||||||||||| ||| |||||||| | |||||||||| ||| |
Sbjct 557 G-G-------AGGACGTCTCATTTCGGGGTTGCAAGAGAAAGGCATTACATACCGTGTAA 608
Query 877 CCACTAATCCGATTCAGAGATCCATTGTGTGGACAATGACACTTCCAGAAGATATTGCTC 936
|| ||||||| ||| | |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 609 CCTCTAATCCAATTGAAAGATCCATCGTGTGGACAATGACACTTCCAGAGGATATTGCTC 668
Query 937 AGTCATTGCCTCTAGGGTCCAAGATTCCATATGTTTTACTCT-TGTATGAGGCTGAAGAC 995
|| | || || ||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 669 AGACTTTACCCCTAGGGTCCAAGATTCCATATGTTTTACT-TATGTATGAGGCTGAAGAC 727
Query 996 TTTTGTAATCTTGTTGCTAAGAAAGAACTTCTAGAAAACGTCTACAGAGTTCGTGACGAA 1055
|||||||||||||||||||| ||||||||||| |||||||||| |||||| |||||| ||
Sbjct 728 TTTTGTAATCTTGTTGCTAATAAAGAACTTCTCGAAAACGTCTCCAGAGTCCGTGACAAA 787
Query 1056 TACCCATCTTATACA-ATGTGCTACCTCACCAATAAGTTACTGTCCTACGTAAACAAAAA 1114
||||||||||||| | ||||||||||||||||||| |||| ||||||||||||| |||||
Sbjct 788 TACCCATCTTATA-AGATGTGCTACCTCACCAATAGGTTAATGTCCTACGTAAAAAAAAA 846
Query 1115 GGAAAGGGTTGAGTACAAGGACCCTGTAAATGGCTGTGGTTGGAGAAAGCCTCCTATTGA 1174
||| || |||||||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct 847 GGAGAGTGTTGAGTACAAGGACCCTGTTAATCGCAGTGGTTGGAGAAAGCCTCCTATTGA 906
Query 1175 TGAGGCAATTGCGA-AGTTATCAACTCACTATATTGGAGTACATTCCCGGCATTGTGTAG 1233
|||||||||||| | ||||| | |||||||| | ||||||||||||| | || |||||||
Sbjct 907 TGAGGCAATTGC-AGAGTTAACTACTCACTACACTGGAGTACATTCCAGACACTGTGTAG 965
Query 1234 ACGAGGCTGAGGTGGCTGACCATGTTGTTCGGTTAACAAGTAGTCTGGCCCATTGCCAAG 1293
||||||||||||||||||||||| ||||||| |||||||||| ||||||| |||||||||
Sbjct 966 ACGAGGCTGAGGTGGCTGACCATCTTGTTCGTTTAACAAGTAATCTGGCCTATTGCCAAG 1025
Query 1294 TCAGGAAGAAGTTAACTCGGTTATCAGTATACGCTGATGGTACATTAATGTCCAAGAATG 1353
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1026 TCAGGAATAAGTTAACTCGGTTATCAGTATGCGCTGATGGTACATTAATGTCCAAGAATG 1085
Query 1354 CAGCTGATAAGCACTTGATTAGAGAGAGCATATGGTTGAAAGTGTTGGTAGCAATACCAA 1413
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1086 CAGCTGATAAGCACTTGATTAGAGAGAGCCTATGGTTGAAAGTGTTGGTAGCAATACCAA 1145
Query 1414 AGGTACAGCCAAGATACGCTATAGCAGTGTCAAAGAAATACCCATCCTTGAAGTCACTTC 1473
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||
Sbjct 1146 AGGTACAGCCAAGATACGCTGTAGCAGTGTCGAAGAAATACCCATCCTTGAAGTCCCTTC 1205
Query 1474 TTAAGGTTTATATGGATCCTAACATATCGGTTCATGAGAAGGAGTTTCTACTGAAAGACT 1533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1206 TTAAGGTTTATATGGATCCTAACATATCGGTTCATGAGAAGGAGTTTCTACTGAAAGATT 1265
Query 1534 TGAAAGTGGAAAATTTAGTAGGAAGA-GACACAAGTG-TAGGTGAGGCCTGTTCGAAGCG 1591
||| ||||||||||||||||||| || |||| || || | ||||| ||||||||||||||
Sbjct 1266 TGAGAGTGGAAAATTTAGTAGGA-GAAGACAAAA-TGGTTGGTGATGCCTGTTCGAAGCG 1323
Query 1592 GATATACAGAGTGCTTATGTCTTTAGATGGAACCATTAAGACTGATGACGTCGAAAATGG 1651
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1324 GATATACAGAGTGCTTATGTCTTTAGATGGAACAATTAAGACTGATGACGTCGAAAATGG 1383
Query 1652 TGCTGCTTCCTTCA 1665
||||||||||||||
Sbjct 1384 TGCTGCTTCCTTCA 1397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70314592270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5