BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G21800.2 Length=1872 Score E Sequences producing significant alignments: (Bits) Value Ahg481045 jgi|Araly1|481045|fgenesh2_kg.4__105__AT2G21800.1 1744 0.0 > Ahg481045 jgi|Araly1|481045|fgenesh2_kg.4__105__AT2G21800.1 Length=1417 Score = 1744 bits (944), Expect = 0.0 Identities = 1250/1394 (90%), Gaps = 35/1394 (3%) Strand=Plus/Plus Query 282 AACAATTTTTTCGGTAAACGAGTTATATCTCTTGAATCGGATTCTGAAGACAGTC-CTGG 340 ||||| |||| |||||||||||| ||||||||||| ||||||||||||||||| | || | Sbjct 29 AACAAGTTTTCCGGTAAACGAGTAATATCTCTTGAGTCGGATTCTGAAGACAG-CTCTCG 87 Query 341 ACCTGAGAGTTCAAAAAAGTATGAACCTGTTTATACTGATTCTTGGAAGAAACCTTGTAG 400 ||||| || |||||| ||||||||||| || || |||||||||||||| | ||||||| Sbjct 88 ACCTGGGACTTCAAAGAAGTATGAACCCGTGGATGCTGATTCTTGGAAGCAGCCTTGTAC 147 Query 401 ATTGGAATTTGGATCCAGTGATGCTAATTCTGATGATGATCCTAGTTGGATGCGGAGAGC 460 |||| ||| |||||||||||||||| |||||||||||||| |||| ||||||| | || | Sbjct 148 ATTGAAATCTGGATCCAGTGATGCTGATTCTGATGATGATACTAGCTGGATGCAGCGACC 207 Query 461 TAGTTTTCAATCTTCGC-TGTCTAAAGATGCTATTGAGGTAGATTCTGACCATGAGAAAG 519 |||||||| |||| | | |||||||||| ||||||| ||||||||||||||||||||||| Sbjct 208 TAGTTTTCGATCTAC-CATGTCTAAAGAGGCTATTGGGGTAGATTCTGACCATGAGAAAG 266 Query 520 AAGATACAGGCGTTGAGAAGA-TGGGTCGAAAAAAGCAGACCATAACTTCTAAAAGTACA 578 |||||||| | |||||||| | || ||||| ||||||||| || || ||||||||||||| Sbjct 267 AAGATACAAGTGTTGAGAA-ATTGCGTCGACAAAAGCAGAGCAGAAGTTCTAAAAGTACA 325 Query 579 TCTCTTTCTGCTGATTCATTGCCTaaaaagaagatgtcaaaagatgaaaaaacccgcgcg 638 ||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||| ||| Sbjct 326 TCTCTTTCTGCTGATGAATTGCCTAAAAAGCAGATGTCAAAAAATGAAAAAGTCCGAGCG 385 Query 639 gcagaggaaaagaagttaca-aaaagaacaagaaaaattacagaaagCTGCCTCGAAAGC 697 ||||||||||||||||| | |||||||||||| |||||||| ||||| ||| ||||||| Sbjct 386 TCAGAGGAAAAGAAGTTA-AGAAAAGAACAAGAGAAATTACAAAAAGCCGCCACGAAAGC 444 Query 698 AGAAGATGCTGAGCATAAAAAGTTGGAGAGGGAAAAGCAGAAATGGGCAAAGGAAAAGGA 757 |||||||||||||||||||||||||||| |||||||||||||||||| |||| || Sbjct 445 TGAAGATGCTGAGCATAAAAAGTTGGAGAAGGAAAAGCAGAAATGGGC-----AAAA-GA 498 Query 758 TAAAGCACTTAAATGTATTGTTGCCTGGATTGACAATAAAGT-GCTTGAAGGATCTTTTG 816 ||||| ||||||| |||||| |||| ||||||||||||| | | |||||| |||| || Sbjct 499 CAAAGCGCTTAAATCTATTGTCGCCTTGATTGACAATAAATTAG-TTGAAGAATCTGTT- 556 Query 817 GAGTTATTACAGGACTTCTCATTTCGGGATTGAAAGAGAAATGTATTACATACCATGTCA 876 | | ||||| |||||||||||| ||| |||||||| | |||||||||| ||| | Sbjct 557 G-G-------AGGACGTCTCATTTCGGGGTTGCAAGAGAAAGGCATTACATACCGTGTAA 608 Query 877 CCACTAATCCGATTCAGAGATCCATTGTGTGGACAATGACACTTCCAGAAGATATTGCTC 936 || ||||||| ||| | |||||||| ||||||||||||||||||||||| |||||||||| Sbjct 609 CCTCTAATCCAATTGAAAGATCCATCGTGTGGACAATGACACTTCCAGAGGATATTGCTC 668 Query 937 AGTCATTGCCTCTAGGGTCCAAGATTCCATATGTTTTACTCT-TGTATGAGGCTGAAGAC 995 || | || || ||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 669 AGACTTTACCCCTAGGGTCCAAGATTCCATATGTTTTACT-TATGTATGAGGCTGAAGAC 727 Query 996 TTTTGTAATCTTGTTGCTAAGAAAGAACTTCTAGAAAACGTCTACAGAGTTCGTGACGAA 1055 |||||||||||||||||||| ||||||||||| |||||||||| |||||| |||||| || Sbjct 728 TTTTGTAATCTTGTTGCTAATAAAGAACTTCTCGAAAACGTCTCCAGAGTCCGTGACAAA 787 Query 1056 TACCCATCTTATACA-ATGTGCTACCTCACCAATAAGTTACTGTCCTACGTAAACAAAAA 1114 ||||||||||||| | ||||||||||||||||||| |||| ||||||||||||| ||||| Sbjct 788 TACCCATCTTATA-AGATGTGCTACCTCACCAATAGGTTAATGTCCTACGTAAAAAAAAA 846 Query 1115 GGAAAGGGTTGAGTACAAGGACCCTGTAAATGGCTGTGGTTGGAGAAAGCCTCCTATTGA 1174 ||| || |||||||||||||||||||| ||| || ||||||||||||||||||||||||| Sbjct 847 GGAGAGTGTTGAGTACAAGGACCCTGTTAATCGCAGTGGTTGGAGAAAGCCTCCTATTGA 906 Query 1175 TGAGGCAATTGCGA-AGTTATCAACTCACTATATTGGAGTACATTCCCGGCATTGTGTAG 1233 |||||||||||| | ||||| | |||||||| | ||||||||||||| | || ||||||| Sbjct 907 TGAGGCAATTGC-AGAGTTAACTACTCACTACACTGGAGTACATTCCAGACACTGTGTAG 965 Query 1234 ACGAGGCTGAGGTGGCTGACCATGTTGTTCGGTTAACAAGTAGTCTGGCCCATTGCCAAG 1293 ||||||||||||||||||||||| ||||||| |||||||||| ||||||| ||||||||| Sbjct 966 ACGAGGCTGAGGTGGCTGACCATCTTGTTCGTTTAACAAGTAATCTGGCCTATTGCCAAG 1025 Query 1294 TCAGGAAGAAGTTAACTCGGTTATCAGTATACGCTGATGGTACATTAATGTCCAAGAATG 1353 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1026 TCAGGAATAAGTTAACTCGGTTATCAGTATGCGCTGATGGTACATTAATGTCCAAGAATG 1085 Query 1354 CAGCTGATAAGCACTTGATTAGAGAGAGCATATGGTTGAAAGTGTTGGTAGCAATACCAA 1413 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1086 CAGCTGATAAGCACTTGATTAGAGAGAGCCTATGGTTGAAAGTGTTGGTAGCAATACCAA 1145 Query 1414 AGGTACAGCCAAGATACGCTATAGCAGTGTCAAAGAAATACCCATCCTTGAAGTCACTTC 1473 |||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||| Sbjct 1146 AGGTACAGCCAAGATACGCTGTAGCAGTGTCGAAGAAATACCCATCCTTGAAGTCCCTTC 1205 Query 1474 TTAAGGTTTATATGGATCCTAACATATCGGTTCATGAGAAGGAGTTTCTACTGAAAGACT 1533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1206 TTAAGGTTTATATGGATCCTAACATATCGGTTCATGAGAAGGAGTTTCTACTGAAAGATT 1265 Query 1534 TGAAAGTGGAAAATTTAGTAGGAAGA-GACACAAGTG-TAGGTGAGGCCTGTTCGAAGCG 1591 ||| ||||||||||||||||||| || |||| || || | ||||| |||||||||||||| Sbjct 1266 TGAGAGTGGAAAATTTAGTAGGA-GAAGACAAAA-TGGTTGGTGATGCCTGTTCGAAGCG 1323 Query 1592 GATATACAGAGTGCTTATGTCTTTAGATGGAACCATTAAGACTGATGACGTCGAAAATGG 1651 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1324 GATATACAGAGTGCTTATGTCTTTAGATGGAACAATTAAGACTGATGACGTCGAAAATGG 1383 Query 1652 TGCTGCTTCCTTCA 1665 |||||||||||||| Sbjct 1384 TGCTGCTTCCTTCA 1397 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70314592270 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5