BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G21810.1

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932123 jgi|Araly1|932123|scaffold_400111.1                        508    9e-144


> Ahg932123 jgi|Araly1|932123|scaffold_400111.1
Length=1747

 Score =  508 bits (275),  Expect = 9e-144
 Identities = 329/355 (93%), Gaps = 4/355 (1%)
 Strand=Plus/Plus

Query  4     CATGTTATGAAACCAGTCCTCATGAGTGCTCTTGATAAATATCCATATTGCAAGATATGT  63
             ||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct  1206  CATGTGATGAAACCAGTCCTCATGAGTGATCTTGATAAATATCCATGTTGCAAGATCTGT  1265

Query  64    GGAGGAAACATACTTGGTAACCCATGGAAATGTGAGACCTGCCGCTTCGAGACACATCAG  123
             |||||||| |||||| |||| ||||||||||| ||||||||| |||||||||||||||| 
Sbjct  1266  GGAGGAAAAATACTTAGTAATCCATGGAAATGCGAGACCTGCAGCTTCGAGACACATCAT  1325

Query  124   TACTGTGTGGAGTTGGGGCGACCATCAAGACATCGATTTCATCAGAACCATCCTTTGACA  183
             ||||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct  1326  TACTGTGCGGAGCTGGGGCGACCATCAAAACATCGAGTTCATCAGAACCATCCTTTGACA  1385

Query  184   CTGTTGACAAAGTATCCTTCACAGGAAAAGATGAAATGTGACATTTGCAGA-GAGAATAT  242
             || ||| |||||||||||||||| |||||||||||||||||| |||||||| || |||||
Sbjct  1386  CTCTTGCCAAAGTATCCTTCACAAGAAAAGATGAAATGTGACGTTTGCAGAGGA-AATAT  1444

Query  243   ATACGATTTCAATCTCTTCTGCCGTATATGT-ACTTTTGTTATCCACATCAACTGTGCCT  301
             |||| | ||||||||||||||||| |||||| | ||||||||||||||||||||||||||
Sbjct  1445  ATACAACTTCAATCTCTTCTGCCGCATATGTGA-TTTTGTTATCCACATCAACTGTGCCT  1503

Query  302   TGAAAAGTAAACATGTTCTTGAAGCTTTAAGGCAGAAATTCACTGGAACTTGGAG  356
             |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  1504  TGAAAAGTAAACATGTTCTTGAAGCTTTAAGGCAGAAATTCACTGGCACTTGGAG  1558



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13850478807


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5