BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21830.1
Length=2015
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932125 jgi|Araly1|932125|scaffold_400113.1 856 0.0
> Ahg932125 jgi|Araly1|932125|scaffold_400113.1
Length=985
Score = 856 bits (463), Expect = 0.0
Identities = 506/527 (96%), Gaps = 1/527 (0%)
Strand=Plus/Plus
Query 91 CAATCTTGCTTCTTCCCCATGGGAAAACTCGAGCATTTCTCCCACTCATGCCCTTTGACC 150
||||||||||| || | ||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 4 CAATCTTGCTT-ATCACGATGGGGAAACTCGAGCATTTCTCCCATTCATGCCCTTTAACC 62
Query 151 TCGCCGGAGATTGTAGCTGAAGGCATCTGCAACATTTGCTTCCAAGACCAAGTTGTTGAA 210
||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 63 TCGCCGGAGGTTGTATCTGAAGGTATCTGCAACATTTGCTTCAAAGACCAAGTTGTTGAA 122
Query 211 TACGCATGTAAGCCTTGCAATTTTGATATATGTAAGACTTGCTCCAAGCTGCCGCAAAAG 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TACGCATGTAAGCCTTGCAATTTTGATATATGTAAGACTTGCTCCAAGCTGCCGCAAAAG 182
Query 271 GTGTCACATGGTTTTCACTCAGATCATCCTCTTGAGTTTTCTCTATTCCAATATGATCGA 330
|||||||||| |||||||||||| |||||||| ||||||| |||||||||||||||||||
Sbjct 183 GTGTCACATGATTTTCACTCAGAACATCCTCTAGAGTTTTGTCTATTCCAATATGATCGA 242
Query 331 AAACCTGGTTACATTGTCTGCTCTTGTTGTGGGAACATGTCTTCTTGCTCATTCTATGAA 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 AAACCTGGTTACATTGTCTGCTCTTGTTGTGGGAACATGTCTTCTTGCTCATTCTATGAA 302
Query 391 TGTAAAGAATGTGAGATCTATCTTGATCTCGGTTGTGCACTACTGAAGAACGTTTTCACT 450
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 303 TGTAAAGAATGTGAGATCTATCTTGATCTCGGTTGTGCACTACTGAGGAACATTTTCACA 362
Query 451 GGTTGGGACGTTAGAGAAATGCTTCATTACAGTCATGAACATTTGCTTCGAAGGTGTAAA 510
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 363 GGTTGGGACGTTAGAGAAATGCTTCATTACAATCATGAACATTTGCTTCGAAGGTGTAGA 422
Query 511 CCAGGACAAGATGCTAGAGGCTCTTGCCTGCTTTGTGAGCTCCCTCTTTCTCCCTCTTCT 570
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 423 CCAGGACAAGATGCTAGAGGCTCTTGCCTGCTTTGTGAGCTCCCTCTGTCTCCCTCTTCT 482
Query 571 ATATGTTACGGTTGTGTTTACTGTTACTCGTTTCTCCACGAGCGCTG 617
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 ATATGTTACGGTTGTGTTTACTGTTACTCGTTTCTCCACGAGCGCTG 529
Score = 388 bits (210), Expect = 6e-107
Identities = 247/265 (93%), Gaps = 2/265 (1%)
Strand=Plus/Plus
Query 1575 CGCCATGAAAGGTAAACGTTTTCTTGGGATGACAGGACCGAAAGTCGTTGGAACTTGGAG 1634
|||||||| |||||||||||||||||| ||| ||| |||||||||||||||||||||||
Sbjct 722 CGCCATGAGAGGTAAACGTTTTCTTGGAATGTTAGGGCCGAAAGTCGTTGGAACTTGGAG 781
Query 1635 AGGACGTTGTTTGGGAGGCAAGCATAGAATGGTCCAAGTTATGTTCCCGAGGTCATATCA 1694
||||||||||||||||||||||||| | ||||| ||||||| ||||||||| ||||||||
Sbjct 782 AGGACGTTGTTTGGGAGGCAAGCATGGGATGGTTCAAGTTACGTTCCCGAGATCATATCA 841
Query 1695 AAAAGTTTGTATTATTTGTCATGAGAGGGTGCTTGGGAAGGCTGTGTCATGTATGGAGTG 1754
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 842 AAAAGTTTGTATTATATGTCATGAGAGAGTGCTTGGGAAAGCTGTGTCATGTATGGAGTG 901
Query 1755 TGAAACGA-TTTATCATCTTCGGTGTATTGACCGACATCGTATCAAAGACCGTGATTCTT 1813
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TGAAAC-AGTTTATCATCTTCGGTGTATTGACCGACATCGTATCAAAGACCGTGATTCTT 960
Query 1814 CGTAGTTAGGTTGTTCCTCCTCTGA 1838
||||||| ||||| ||||||||||
Sbjct 961 CGTAGTTCGGTTGCGCCTCCTCTGA 985
Score = 222 bits (120), Expect = 7e-57
Identities = 132/138 (96%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 610 GAGCGCTGTCTCGATCTTCCGACAGAGATTCGACATCCCGTGCATCTGGAACACCCTCTC 669
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 582 GAGCGCTGTCTCGATCTTCCGACAGAGATTCGACATCCCGTGCATCTGGTACACCCTCTC 641
Query 670 AGACGCCTTGATTACATACGAAGTGGTGGTCGAACATTTTGCGGTGCGTGTAGAGAGAAG 729
||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||| ||
Sbjct 642 AGACGCCTTGATTACATACAAAGTGGTGGTCGAACATTTTGTGGTGCATGTAGGGAGGAG 701
Query 730 ATTGACAGTGTCCCCTTT 747
||||||||||||||||||
Sbjct 702 ATTGACAGTGTCCCCTTT 719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75761497305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5