BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G21830.1 Length=2015 Score E Sequences producing significant alignments: (Bits) Value Ahg932125 jgi|Araly1|932125|scaffold_400113.1 856 0.0 > Ahg932125 jgi|Araly1|932125|scaffold_400113.1 Length=985 Score = 856 bits (463), Expect = 0.0 Identities = 506/527 (96%), Gaps = 1/527 (0%) Strand=Plus/Plus Query 91 CAATCTTGCTTCTTCCCCATGGGAAAACTCGAGCATTTCTCCCACTCATGCCCTTTGACC 150 ||||||||||| || | ||||| |||||||||||||||||||| ||||||||||| ||| Sbjct 4 CAATCTTGCTT-ATCACGATGGGGAAACTCGAGCATTTCTCCCATTCATGCCCTTTAACC 62 Query 151 TCGCCGGAGATTGTAGCTGAAGGCATCTGCAACATTTGCTTCCAAGACCAAGTTGTTGAA 210 ||||||||| ||||| ||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 63 TCGCCGGAGGTTGTATCTGAAGGTATCTGCAACATTTGCTTCAAAGACCAAGTTGTTGAA 122 Query 211 TACGCATGTAAGCCTTGCAATTTTGATATATGTAAGACTTGCTCCAAGCTGCCGCAAAAG 270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 TACGCATGTAAGCCTTGCAATTTTGATATATGTAAGACTTGCTCCAAGCTGCCGCAAAAG 182 Query 271 GTGTCACATGGTTTTCACTCAGATCATCCTCTTGAGTTTTCTCTATTCCAATATGATCGA 330 |||||||||| |||||||||||| |||||||| ||||||| ||||||||||||||||||| Sbjct 183 GTGTCACATGATTTTCACTCAGAACATCCTCTAGAGTTTTGTCTATTCCAATATGATCGA 242 Query 331 AAACCTGGTTACATTGTCTGCTCTTGTTGTGGGAACATGTCTTCTTGCTCATTCTATGAA 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 AAACCTGGTTACATTGTCTGCTCTTGTTGTGGGAACATGTCTTCTTGCTCATTCTATGAA 302 Query 391 TGTAAAGAATGTGAGATCTATCTTGATCTCGGTTGTGCACTACTGAAGAACGTTTTCACT 450 |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 303 TGTAAAGAATGTGAGATCTATCTTGATCTCGGTTGTGCACTACTGAGGAACATTTTCACA 362 Query 451 GGTTGGGACGTTAGAGAAATGCTTCATTACAGTCATGAACATTTGCTTCGAAGGTGTAAA 510 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 363 GGTTGGGACGTTAGAGAAATGCTTCATTACAATCATGAACATTTGCTTCGAAGGTGTAGA 422 Query 511 CCAGGACAAGATGCTAGAGGCTCTTGCCTGCTTTGTGAGCTCCCTCTTTCTCCCTCTTCT 570 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 423 CCAGGACAAGATGCTAGAGGCTCTTGCCTGCTTTGTGAGCTCCCTCTGTCTCCCTCTTCT 482 Query 571 ATATGTTACGGTTGTGTTTACTGTTACTCGTTTCTCCACGAGCGCTG 617 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 483 ATATGTTACGGTTGTGTTTACTGTTACTCGTTTCTCCACGAGCGCTG 529 Score = 388 bits (210), Expect = 6e-107 Identities = 247/265 (93%), Gaps = 2/265 (1%) Strand=Plus/Plus Query 1575 CGCCATGAAAGGTAAACGTTTTCTTGGGATGACAGGACCGAAAGTCGTTGGAACTTGGAG 1634 |||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||||| Sbjct 722 CGCCATGAGAGGTAAACGTTTTCTTGGAATGTTAGGGCCGAAAGTCGTTGGAACTTGGAG 781 Query 1635 AGGACGTTGTTTGGGAGGCAAGCATAGAATGGTCCAAGTTATGTTCCCGAGGTCATATCA 1694 ||||||||||||||||||||||||| | ||||| ||||||| ||||||||| |||||||| Sbjct 782 AGGACGTTGTTTGGGAGGCAAGCATGGGATGGTTCAAGTTACGTTCCCGAGATCATATCA 841 Query 1695 AAAAGTTTGTATTATTTGTCATGAGAGGGTGCTTGGGAAGGCTGTGTCATGTATGGAGTG 1754 ||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 842 AAAAGTTTGTATTATATGTCATGAGAGAGTGCTTGGGAAAGCTGTGTCATGTATGGAGTG 901 Query 1755 TGAAACGA-TTTATCATCTTCGGTGTATTGACCGACATCGTATCAAAGACCGTGATTCTT 1813 |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 902 TGAAAC-AGTTTATCATCTTCGGTGTATTGACCGACATCGTATCAAAGACCGTGATTCTT 960 Query 1814 CGTAGTTAGGTTGTTCCTCCTCTGA 1838 ||||||| ||||| |||||||||| Sbjct 961 CGTAGTTCGGTTGCGCCTCCTCTGA 985 Score = 222 bits (120), Expect = 7e-57 Identities = 132/138 (96%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 610 GAGCGCTGTCTCGATCTTCCGACAGAGATTCGACATCCCGTGCATCTGGAACACCCTCTC 669 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 582 GAGCGCTGTCTCGATCTTCCGACAGAGATTCGACATCCCGTGCATCTGGTACACCCTCTC 641 Query 670 AGACGCCTTGATTACATACGAAGTGGTGGTCGAACATTTTGCGGTGCGTGTAGAGAGAAG 729 ||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||| || Sbjct 642 AGACGCCTTGATTACATACAAAGTGGTGGTCGAACATTTTGTGGTGCATGTAGGGAGGAG 701 Query 730 ATTGACAGTGTCCCCTTT 747 |||||||||||||||||| Sbjct 702 ATTGACAGTGTCCCCTTT 719 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75761497305 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5