BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21840.1
Length=2654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481047 jgi|Araly1|481047|fgenesh2_kg.4__107__AT2G21840.1 2885 0.0
Ahg320032 jgi|Araly1|320032|fgenesh1_pm.C_scaffold_4000089 239 9e-62
> Ahg481047 jgi|Araly1|481047|fgenesh2_kg.4__107__AT2G21840.1
Length=2532
Score = 2885 bits (1562), Expect = 0.0
Identities = 2070/2307 (90%), Gaps = 67/2307 (3%)
Strand=Plus/Plus
Query 11 CTCTCGATGGGAAAGCTCCAACATGGATCTCATGAGTGCGAGTTGACCTCGCGGGGGATC 70
|||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||
Sbjct 1 CTCTCGATGGGAAAGCTCCAACATGGATCTCACGAATGCGAGTTGACCTCGCCGGGGATC 60
Query 71 GTCGCAAACGGGATCTGCAACATCTGCTTCAAAGATGAACCTGTTGAATTCGCCTGTGAC 130
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTGCAAATGGGATCTGCAACATCTGCTTCAAAGATGAACCTGTTGAATTCGCCTGTGAC 120
Query 131 CCTTGCAATTTCGATCTCTGCAAAGCTTGCTCAGATCTTCCCCAGAAAATGTCACACCAT 190
||||| |||||||||||||||||| ||||||| |||||||||||| ||||||||||||||
Sbjct 121 CCTTGTAATTTCGATCTCTGCAAACCTTGCTCCGATCTTCCCCAGCAAATGTCACACCAT 180
Query 191 CTTCATCCGGAGCACCCTCTAGAATTTCGTATAGGCGAAGATGATCAGAAGACTAAACAC 250
||||||||||||||||||||||| |||||||| ||||||||||||| |||||| ||| ||
Sbjct 181 CTTCATCCGGAGCACCCTCTAGAGTTTCGTATTGGCGAAGATGATCGGAAGACCAAATAC 240
Query 251 ATGGTGTGCGTCGTGTGCGGAAACATGTCTTCTGGAGCCAAATACTATTACGAGTGTAGC 310
||||||||||||| |||||||||||||||||||||| || ||||| |||||||||| |
Sbjct 241 ATGGTGTGCGTCGGGTGCGGAAACATGTCTTCTGGAACC---TACTACTACGAGTGTAAC 297
Query 311 AAGTGTGAGATCTACCTCGATTTGGGCTGTGCACTTCAGAAGAACATAGCGACGAGTTGG 370
|||||||||||||| || |||||||| ||||||||||| |||| |||| | ||| |||||
Sbjct 298 AAGTGTGAGATCTATCTTGATTTGGGTTGTGCACTTCACAAGAGCATAACAACGGGTTGG 357
Query 371 GAAGCCAAAGAAATGCTCCATTACAGCCATGAACACTTA-CTTAAAAGGTGTAGGCCAGG 429
||||||||||| |||||||||||||||||||||||| | ||||| ||||||||||| ||
Sbjct 358 GAAGCCAAAGAGATGCTCCATTACAGCCATGAACACC-AGCTTAAGAGGTGTAGGCCGGG 416
Query 430 ACCAGATTCCAAAGACTCTTGCCTTCTCTGTGAGCAACCTCTCTCCTTCACTGCAATATG 489
||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 417 ACCAGATTCCAGAGGCTCTTGCCTTCTCTGTGAGCAACCTCTCTCTTTCACTGCAATATG 476
Query 490 TTACGGTTGCGTTCATTGTTACTTGTTTTTTCACGAGCGTTGCCTTGATCTACCAACCGA 549
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 477 TTACGGTTGCGTTCACTGTTACTTGTTTTTACACGAGCGTTGCCTTGATCTTCCAACAGA 536
Query 550 GATTCAACATCCCGTGCATCCTATGCACCCTCTCAAACGCCTTAATTATATACAAACTTT 609
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 537 GATTCAACATCCCGTGCATCCTCTGCACCCTCTCAAACGCCTTGATTATATACAAACTTT 596
Query 610 TGACGGT-GAGAAATCTTGTAATGCCTGT-CACGGCCAATTTGTTGGTGTCCCATTTGGT 667
||||||| | ||| ||||||| ||| ||| || ||| |||||||||||||||||||||||
Sbjct 597 TGACGGTCG-GAAGTCTTGTAGTGCATGTACA-GGCAAATTTGTTGGTGTCCCATTTGGT 654
Query 668 TGCTTAGGATGTGGGTTTTACCTTCATCTGAGATGTGCAGATGCCTTGTTGCGGGGTTTG 727
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 655 TGCTTAGAATGTGGGTTTTACCTTCATCTGAGATGTGCAGATGCCTTGTTGTGGGGTTTG 714
Query 728 TTGTATAAGTCCCATGAACACAGGCTATTTTATGTAGAA-AGTACTCGTCGTGTTGCTGA 786
||| ||||||| |||||||||||| | ||||||||| || | |||||||||||| |||||
Sbjct 715 TTGCATAAGTCTCATGAACACAGGTTGTTTTATGTACAAGA-TACTCGTCGTGTCGCTGA 773
Query 787 TGAAAGAGTAAAACAACCATGTCTAATATGC-AAGGAAACCGTGGTCTATGACAGATTCT 845
||| ||||||||| |||||| |||||||| ||| |||| |||||||||||||| || |
Sbjct 774 TGATAGAGTAAAATGCCCATGTATAATATGCGAAG-AAACTGTGGTCTATGACAGTTTTT 832
Query 846 ATTATTTATGCGTGGAATGTGATTTGAAATGTCATACCAAGTGTCTTGAGATACCTGAAT 905
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 ATTATATATGCGTCGAATGTGATTTGAAATGTCATACCAAGTGTCTTGAGATACCTGAAT 892
Query 906 ATGTGATCAAGAAATCCTATCACATCCATAAACTTAGATTTATAAGAGTCGGAGGGGAGG 965
||||| ||| ||||||||||||||||||| ||||||||| || ||||||||||| |||||
Sbjct 893 ATGTGGTCAGGAAATCCTATCACATCCATCAACTTAGATATAAAAGAGTCGGAGCGGAGG 952
Query 966 ACGATTTTTTGGAGTATTGTGGTGTTTGTGAGACTATGGTA-ATTTCACGATATCCTGAA 1024
| ||||||||||||||||||||||||||||||||| || || ||| || || ||||||
Sbjct 953 ATGATTTTTTGGAGTATTGTGGTGTTTGTGAGACTCTGTTACATT-CAGGACATCCTGCG 1011
Query 1025 TATTCCTGTGAAGAATGTGATTTTGTCGGCCACACTGAATGCATTCTACGCGAGGAAGTG 1084
|||||||||||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 1012 TATTCCTGTGAAGAATGTGATTTTCTTGGTCACACTGAATGCATTCTACGCGAGGAAGTA 1071
Query 1085 CCTTCCCCAATGTACTTGAAAGATTTGTACTCTTGCAGCAAAGGCA-AC-A-C-AAAA-T 1139
||||||||| ||||||||||||||||||||||||||||||||| || | | | |||| |
Sbjct 1072 CCTTCCCCATTGTACTTGAAAGATTTGTACTCTTGCAGCAAAGACACAAGATCCAAAAAT 1131
Query 1140 CCCA-ACATCTTGAAACCATTGAATTTGAAGATAGGTTACTGGTTAATAGCTTCAGTCAT 1198
| | | | |||||||||| ||||| ||||||| |||||||||||||||||||| ||||
Sbjct 1132 CTTACAGACCTTGAAACCAGTGAATCAGAAGATATGTTACTGGTTAATAGCTTCAATCAT 1191
Query 1199 ATTCATGTGATGAAACTAATCCACATGAGTGAGCTTGAGGAAGAAGGAAAGTGCAACATG 1258
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 ATTCATGTGATGAGACTGATCCACATGAGTGAGCTTGAGGAAGAAGGAAAGTGCAACATG 1251
Query 1259 TGTGGGACAAAAATACATGATAATCCTTGCAAATGTGAGACATGTAGCTTCCAATCACAT 1318
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 TGTGGTACAAAGATACATGATAATCCTTGCAAATGTGAGACATGTAGCTTCCAATCACAT 1311
Query 1319 GATTTTTGTGCAGAGCTTGGGCGACCATCAAAGCATCAGTTTCATTTAAACCATTCTTTG 1378
||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||| ||||
Sbjct 1312 GATTTCTGTGCAGAGCTTGGGCGACCATCAAGGCATCAATTTCATTTGAACCATTTTTTG 1371
Query 1379 ACCCTTCTACCAAATACCCCTAGATGGTTTAGAAGGAA-GTGTGAGTCATGCAAAGAC-G 1436
||||||||||||||| ||||||||||| || |||| | |||| |||| ||||||| | |
Sbjct 1372 ACCCTTCTACCAAATTCCCCTAGATGGATTC-AAGGTACGTGTAAGTCCTGCAAAG-CTG 1429
Query 1437 ATATAGGCGGGTTCAATCTCTTCTGTCGTATATGCAATTTCATCATCGACATCAACTGCG 1496
||||| |||| ||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1430 ATATAAAAGGGTACAATCTCTTCTGTCGTATATGCAATTTTATCATCGACATCAATTGCG 1489
Query 1497 CTTTGAAAGATaaaaaaaTGCATGGTGCATTACAAAGGGGTCAGAAAATCATTGGAACAT 1556
|||||||||| ||||||||||||||||||||||| | |||||||| | | ||| | |
Sbjct 1490 CTTTGAAAGACAAAAAAATGCATGGTGCATTACACATGGGTCAGA---T-A--GGA-C-T 1541
Query 1557 GGTTAGGACTTTGCATACAAGACAAACATAGCTTGTTTCAAGTTATCGTTTCACGGTCAT 1616
|| | | ||||||||||||||||||||||| |||||||| || ||| |||||
Sbjct 1542 --TT-G--C-----ATACAAGACAAACATAGCTTGTTCCAAGTTATTGTCTCAAGGTCAC 1591
Query 1617 ATCCTATCACTTGTTCTATTTGTGATGAGAAGTTTTGTGGAAAGGCTTTTTCATGTGTGA 1676
|||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1592 ATCCTATCGCTTGTTCTATATGTGATGAGAAGTTGTGTGGAAAGGCTTTTTCATGTGTGA 1651
Query 1677 CGTGTGAAGATATATATCACCCTATGTGTATCCAAGTTGGGAGGCGAATT-CTAGTTGGT 1735
|||||||||||||||||||||| ||||||||||||||||||||| || | |||||||||
Sbjct 1652 TGTGTGAAGATATATATCACCCTCTGTGTATCCAAGTTGGGAGGC-AAGTACTAGTTGGT 1710
Query 1736 CATCCACTTCATGT-TGATCACATGCTAGCAATTTCACT--TA-AAAGTGGATCCAAGTG 1791
|||||||||||| | |||||||||||||||||||||||| | ||||| ||||||||||
Sbjct 1711 CATCCACTTCAT-TCTGATCACATGCTAGCAATTTCACTGCTTGAAAGTAGATCCAAGTG 1769
Query 1792 CACGGCCTGCCAACTGAATATAACAA-AA--TATGGCTATCATTGTACCATCTGCGAAAT 1848
||||||||||||||||||||| |||| || |||||||||| ||||||||| ||| ||||
Sbjct 1770 CACGGCCTGCCAACTGAATATTACAACAAAGTATGGCTATCTTTGTACCATTTGCAAAAT 1829
Query 1849 CAATTTCCATATTGAATGCATCAAAGCAGTGATAGTACCAAGAAAGATCAAGTCTCATAG 1908
||||||||||||||| ||||||||||||||| |||||||||| |||||||| ||||||||
Sbjct 1830 CAATTTCCATATTGATTGCATCAAAGCAGTGGTAGTACCAAGCAAGATCAAATCTCATAG 1889
Query 1909 TCACTATTTCTATAACTTTTGGAACAATGATTCGAGGGTGACTCGAGCTTGCGGTGTGTG 1968
|||||| |||||||||||||||||||||||| |||||||||||||||||| |||| ||
Sbjct 1890 GCACTATCTCTATAACTTTTGGAACAATGATTTAAGGGTGACTCGAGCTTGCAGTGTTTG 1949
Query 1969 CTCTAGACCATGTGGTGTGTCGTTCTACGGATGTATTGACTGTATGTTCAACGCCCATGT 2028
| |||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1950 CACTAGACCATGTGGTTTGTCGTTCTACGGATGTATTGACTGTATGTTCAGCGCACATGT 2009
Query 2029 AGAGTGTATTGGGTTTCCAGCTAATGTGAGGAACCAACGGCATGTGCATACTCTCACACA 2088
||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 2010 AGAGTGTGTTGGGTTTCCAGCTAATGTGAAGAACCAACGGCATCAGCATACTCTCACACA 2069
Query 2089 AGTATACACTTCTCACAGGGAAAAATGGTCTGTCCGTGA--CAATTACATGGATCG-TAT 2145
||||||||||||||||||| ||||||||||||||||||| || | |||||||| | |||
Sbjct 2070 AGTATACACTTCTCACAGGAAAAAATGGTCTGTCCGTGAATCA-T-ACATGGAT-GATAT 2126
Query 2146 ATCTTACAAATGCTATCCTTGCGAT-A-GGA-ATTTTCCCACTGAAAGGATAATGTCTAA 2202
|| |||| ||| |||| |||||| | ||| || | | | ||| |||||||||||
Sbjct 2127 ATATTACGCATGTTATCATTGCGAGCATGGATATGAT---AGTCAAACTATAATGTCTAA 2183
Query 2203 GGATGACCGT-AGGGAAACAACAGAAGAGAAACAACAGAAAGACATCTATCTTATGCACC 2261
||| |||||| ||| || ||||||||||| |||||| ||||||| ||||||||| |||
Sbjct 2184 GGACGACCGTGAGG-AAGCAACAGAAGAGGAACAACTTCAAGACATTTATCTTATGTACC 2242
Query 2262 TTGAGCGTGATCTCATTGACCTTTTAG 2288
|||||||||||||||||||||||||||
Sbjct 2243 TTGAGCGTGATCTCATTGACCTTTTAG 2269
Score = 287 bits (155), Expect = 3e-76
Identities = 196/215 (91%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 2332 CCTCTTAGTTTGGTTCTGCCTCCCTTTATGAAACTGAATACGGAAAAATCCCTTATCTGA 2391
|||||| |||||||||||||||||| ||||||||||||||| |||| ||||||||||||
Sbjct 2279 CCTCTTCGTTTGGTTCTGCCTCCCTATATGAAACTGAATACTGAAATTTCCCTTATCTGA 2338
Query 2392 GGTTATGCCTCAATCTCTTCTC---GTTTTCTTATCGTGTTTTAACAATAAAAGGTGGCG 2448
||||||||||||| |||||||| |||| |||||||||||| ||||| ||||||||
Sbjct 2339 GGTTATGCCTCAACCTCTTCTCTTTTTTTTTTTATCGTGTTTTTACAATGGAAGGTGGCA 2398
Query 2449 TGTTCGAAGACTTG-G-CTCTGATGAGTCTT-ATTTGTTATGCCTCCCTCTCTCAAATGC 2505
|||||||||||||| | |||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 2399 TGTTCGAAGACTTGAGACTCTGATGAGTCTTAATTTGTTATGCCTCCCTCTCTTAAATGC 2458
Query 2506 AACTTCAGTGAACTAAAGTTATGTTTCAGAATTCT 2540
|||||||||||||||||||||||||||||||||||
Sbjct 2459 AACTTCAGTGAACTAAAGTTATGTTTCAGAATTCT 2493
> Ahg320032 jgi|Araly1|320032|fgenesh1_pm.C_scaffold_4000089
Length=2391
Score = 239 bits (129), Expect = 9e-62
Identities = 434/576 (75%), Gaps = 41/576 (7%)
Strand=Plus/Plus
Query 41 CATGAGTGCGAGTTGACCTCGCGGGGGATCGTCGCAAACGGGATCTGCAACATCTGCTTC 100
||||| ||| |||||| |||| ||||||||| | ||||| |||| ||| |||| |
Sbjct 25 CATGAATGCCTGTTGACTTCGCCAAAGATCGTCGCCGAGGGGATTTGCAGCATTTGCTAC 84
Query 101 AAAGATGAACCT-GTTGAATTCGCCTGTGA-CCCTTGC-AATTTCGATCTCTGCAAAGCT 157
||||||||| | || || || || ||| | ||||||| || ||| |||| || ||||||
Sbjct 85 AAAGATGAA-GTCGTCGAGTTGGCATGT-AGCCCTTGCGAA-TTCAATCTTTGTAAAGCT 141
Query 158 TG--CTCA-GATCTTCCCCAGAAAATGTCACACCATCTT-CATCCGGAGCACCCTCTAGA 213
|| |||| ||||| || ||||| |||||||| || || |||||||| || ||||||||
Sbjct 142 TGCTCTCATGATCTGCCGCAGAAGGTGTCACACGAT-TTCCATCCGGATCATCCTCTAGA 200
Query 214 ATTTCGTATAGGC-GAAG-ATGATCAGAAGA-CTAAACACATGGTGTGCGT-CGTGTGCG 269
|||| || || | ||| | |||||||| | | | |||| || ||| | || ||| |
Sbjct 201 ATTTTGTGTA--CATAAGTACGATCAGAA-ACCGGGATACATCGTCTGC-TCCGGGTGTG 256
Query 270 GAAACATGTCTTCTGGAGCCAAATACTAT-TACGAGTGTAGCA-AGTGTGAGATCTACCT 327
| |||||||||||| | | | || | ||| |||||| | ||||||||||||| |
Sbjct 257 GTAACATGTCTTCT-G-G-----TTCTTTCTACAAGTGTA-AAGAGTGTGAGATCTATTT 308
Query 328 CGATTTGGGCTGTGCACTTCAG-AAGAACAT-AGCGACGAGTTGGGAAGCCAAAGAAATG 385
||| | | ||||| | |||| |||||| | | | | |||| | |||||| |
Sbjct 309 GGATCTCGATTGTGCGC-TCAGTGCGAACATCTTC-AGGGGCTGGGGTGACAAAGACTTT 366
Query 386 CTCCATTACAGCCA-TGAACACTTACTTAAAAGGTGTAGGCCAGGACCAGATTCCAAAGA 444
|||||||||||||| || ||||| ||||| |||||||| || |||||||| | | ||
Sbjct 367 CTCCATTACAGCCATTG-CCACTTGCTTAAGAGGTGTAGACCGGGACCAGACGCTAGAGG 425
Query 445 CTCTTGCCTTCTCTGTGAGC--AACCTCTCTCCTTCACTGCAATATGTTACGGTTGCGTT 502
||||||||||||||||||| ||||||||| | |||||||||||||||||||||||
Sbjct 426 TTCTTGCCTTCTCTGTGAGCTTCCCCTCTCTCC--CTCTGCAATATGTTACGGTTGCGTT 483
Query 503 CATTGTTACTTGTTTTTTCACGAGCGTTGCCTTGATCTACCAACCGAGATT-CAACATCC 561
|||||||||| ||| ||||||| || || ||||| | || | ||| || || |||||
Sbjct 484 CATTGTTACTCATTTGTTCACGAACGCTGTATTGATTTTCCGAGAGAGGTTGCA-CATCC 542
Query 562 CGTGCATCCTATGCACCCTCTCAAACGCCTTAATTA 597
||||||||| |||||||||||||| ||| ||||
Sbjct 543 TGTGCATCCTGCACACCCTCTCAAACGACTTGATTA 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100101163860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5