BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21850.1
Length=2654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320032 jgi|Araly1|320032|fgenesh1_pm.C_scaffold_4000089 2911 0.0
> Ahg320032 jgi|Araly1|320032|fgenesh1_pm.C_scaffold_4000089
Length=2391
Score = 2911 bits (1576), Expect = 0.0
Identities = 2136/2402 (89%), Gaps = 56/2402 (2%)
Strand=Plus/Plus
Query 51 ATGGCAGAGCTCA-AGCATTTCTCCCATGAATGCCCATTGACTTCACCCAAGATCGCCGT 109
|||||||||| || ||||||||||||||||||||| |||||||| || ||||||| ||
Sbjct 1 ATGGCAGAGC-CACAGCATTTCTCCCATGAATGCCTGTTGACTTCGCCAAAGATCGTCGC 59
Query 110 CGACGGGATTTGCAGCATTTGCTACAAAGATGACCTTGTCGAGTTGGCATGTAGCCCTTG 169
||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 60 CGAGGGGATTTGCAGCATTTGCTACAAAGATGAAGTCGTCGAGTTGGCATGTAGCCCTTG 119
Query 170 CGATTTCAGTCTCTGTAAAGGTTGCTCTCA--A-CTTCCGCAGAAGGTCTGGCACGATTT 226
||| |||| ||| ||||||| ||||||||| | || ||||||||||| | ||||||||
Sbjct 120 CGAATTCAATCTTTGTAAAGCTTGCTCTCATGATCTGCCGCAGAAGGTGTCACACGATTT 179
Query 227 CCATCCGGATCATCCTCTGGAATTTTGTCTGCACCAGTACGATCAGAAACCTGAACACGT 286
|||||||||||||||||| ||||||||| | || |||||||||||||||| | | || |
Sbjct 180 CCATCCGGATCATCCTCTAGAATTTTGTGTACATAAGTACGATCAGAAACCGGGATACAT 239
Query 287 CGTATGCTCCGGGTGTGGCAACATGACTTCTGGCTCTTTCTATAAGTGTAAAGAGTGTGA 346
||| |||||||||||||| |||||| ||||||| |||||||| |||||||||||||||||
Sbjct 240 CGTCTGCTCCGGGTGTGGTAACATGTCTTCTGGTTCTTTCTACAAGTGTAAAGAGTGTGA 299
Query 347 GATATACTTGGA-CATGGGCTGTGCGCTCATTGCGAGCATCTTCAGGGGCTGGGATAG-C 404
||| || ||||| | | | |||||||||| ||||| ||||||||||||||||| | | |
Sbjct 300 GATCTATTTGGATC-TCGATTGTGCGCTCAGTGCGAACATCTTCAGGGGCTGGGGT-GAC 357
Query 405 AAAGACTTGCTCCATTACAGCCATTGCCACTTGCTTAAGAGGTGTAGACCCGGACCAGAC 464
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 358 AAAGACTTTCTCCATTACAGCCATTGCCACTTGCTTAAGAGGTGTAGACCGGGACCAGAC 417
Query 465 GCTAGAGGTTCTTGCCTTCTCTGTGAGCTTCCCCTCTCTCCCTCTTCCGTTTGTTATGGT 524
||||||||||||||||||||||||||||||||||||||||||||| | | ||||| |||
Sbjct 418 GCTAGAGGTTCTTGCCTTCTCTGTGAGCTTCCCCTCTCTCCCTCTGCAATATGTTACGGT 477
Query 525 TGCGTTCATTGTTACTCATTTGTTCACGAACGCTGTATTCATTTTCCGAGAGAGATTGCA 584
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 478 TGCGTTCATTGTTACTCATTTGTTCACGAACGCTGTATTGATTTTCCGAGAGAGGTTGCA 537
Query 585 CATCCTGTGCATCTTGCACACCCTCTCAAACGGCTTGATTACACACGAACTAGTCTCTGT 644
||||||||||||| |||||||||||||||||| |||||||||||||| |||||| ||||
Sbjct 538 CATCCTGTGCATCCTGCACACCCTCTCAAACGACTTGATTACACACGTTCTAGTCGCTGT 597
Query 645 CATATATGCGGGGAAAGT-ATCGCTGGTGTCCCATTTGGTTGCCTAGAATGCGATTTTGA 703
||||||||||||||| | || || || ||||||||||||| |||||||||| ||||||
Sbjct 598 GATATATGCGGGGAAA-TCATTGCCAGTATCCCATTTGGTTGTCTAGAATGCGTTTTTGA 656
Query 704 CGCTCACTTGAGGTGTTTAGATTCCTTTT-TGCGAGGGCTGATGCACAAGTCTCATCCGC 762
|||||| ||||||||||||||||| |||| ||||||| || |||||||||||||||| ||
Sbjct 657 CGCTCATTTGAGGTGTTTAGATTC-TTTTCTGCGAGGTCTTATGCACAAGTCTCATCAGC 715
Query 763 ACAGGTTGATTTATAGAACTAAATCTCACATAAGTTTCACAGAGAATGATCAATGTCAAA 822
||| |||||||||||||||||||||| |||||||||||||||| || ||||||||||||
Sbjct 716 ACATGTTGATTTATAGAACTAAATCTTACATAAGTTTCACAGAAAACCATCAATGTCAAA 775
Query 823 TATGCAGGAGAAGTATTGTGATATCTCTTGACTCttttttttACTGCATACAATGCTCTA 882
||||| ||||| ||| || ||| ||||| |||||||||||||||||||| |||||| ||
Sbjct 776 TATGCGGGAGATGTAATGAGATCTCTCTGGACTCTTTTTTTTACTGCATGGAATGCTGTA 835
Query 883 TGGTTTTCCATTTCGAGTGTCTTGAGATACCTGAGTTTGTGGTCGAGAAGTCTCATCACA 942
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 836 TGGTTTTCCATTTCGAGTGTCTTGAGATACCTGAGTTTGTGGTCGCCAAGTCTCATCACA 895
Query 943 TTCATCCACTTGTGTGCAAATTTCTCCCATATGAGGATGAATTTTTGGAGTATTGTGGCG 1002
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 896 TTCATCCACTTGTGTGCAAATTGCTCCCATATGAGGAAGAATTTTTGGAGTATTGTGGCG 955
Query 1003 TTTGCGAGACAATGGTGTATGCAGGACATCATGCTTATTCCTGTGACGAATGTGATTTTC 1062
|||||||||||||||| |||||||||||||||| |||||||||||| ||||||| |||||
Sbjct 956 TTTGCGAGACAATGGTATATGCAGGACATCATGTTTATTCCTGTGAAGAATGTGGTTTTC 1015
Query 1063 TAGGCCACATTGAATGCATTCTACGCAAGGCTGCCCCTTCCCCACTATACTTGAAAGATC 1122
| |||||||||||||||||||||||||||| || ||||||||| |||||||||||||||
Sbjct 1016 TGGGCCACATTGAATGCATTCTACGCAAGGAAGCGCCTTCCCCATTATACTTGAAAGATC 1075
Query 1123 TTTACCCTTGCAGCAAAGACAACACTAGTTCAACATATCAACTGGACCATGATACCAATG 1182
||||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||
Sbjct 1076 TTTACGCTTGCAGCAAAGACAACACAAGTTCAACAAATCAAGAGGACCATGATACCAATG 1135
Query 1183 AGCCA-AAAGCCGAACTTATGGTCAATACTATGAAGGGGCATATACATGTGATGCGATTC 1241
||| | ||| || |||||||||| |||| ||||||||||||||| ||||||||| |||||
Sbjct 1136 AGCTAGAAA-CCAAACTTATGGTTAATAGTATGAAGGGGCATATTCATGTGATGAGATTC 1194
Query 1242 GTTGATTTCCGTGAGCTTGATGAAAAAGCAAAGTGCAACATCTGTCGGACAAAAATACGC 1301
|||||| || |||| |||||||||| ||||| |||||||| ||| ||||||||||
Sbjct 1195 GTTGATGTCAGTGAACTTGATGAAACTGCAAATTGCAACATATGTAAAACAAAAATACTT 1254
Query 1302 GGTAGCCCATGTAAATGCGAGACGTGCAGCTTCCAGGCGCATAGTTTCTGCGCAGAGCTA 1361
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||
Sbjct 1255 AGTAGCCCATGTAAATGCGAGACATGCAGCTTCCAGGCGCATAATTTCTGCGCAGAGTTA 1314
Query 1362 GGGCGACCATTGAAGCATCGAGTTCATAAGCATT-TTCTGACACTCTTACCAGATGCCCC 1420
|||||| |||||||||||||||| ||||||||| || |||||||||| ||||| |||||
Sbjct 1315 GGGCGATCATTGAAGCATCGAGTCCATAAGCATCCTT-TGACACTCTTGCCAGAGGCCCC 1373
Query 1421 TGCAGGCACAGATGTTACTATGAATTGTGACATTTGCAGAGATGATATAAAAGGGTTCAA 1480
|||||| ||| |||||||||||||| |||||||||| | | ||||| |||||||||||
Sbjct 1374 TGCAGGTGCAGGGGTTACTATGAATTGCGACATTTGCACAAAGGATATCAAAGGGTTCAA 1433
Query 1481 TCTCTTTTGTCG-CATATGCAATTTTGTCATCCATACCAATTGCATATTTAGAGGTAAAC 1539
|||||| ||||| | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1434 TCTCTTCTGTCGGC-TATGCAATTTTGTCATCCATACCAATTGCATATTTAAAGGTAAAC 1492
Query 1540 ACTTATTTACGGAGTCACAAAGGGGGCAAAAAATCATTGGAAGCTGTACAGCGATGAGTG 1599
| || |||||||||| |||||| ||||||||||||||||||||||||| || ||||| |
Sbjct 1493 ATTTGTTTACGGAGTTACAAAGAGGGCAAAAAATCATTGGAAGCTGTAAAGGGATGATTA 1552
Query 1600 GATGCATTCAAAAAGAGCATTTGTTGGATCAAATAATGGTCTCAAAGTCATACTCCATGG 1659
|||||||||||||||| |||| |||||||||||| |||||||||||||| || |||||||
Sbjct 1553 GATGCATTCAAAAAGACCATTCGTTGGATCAAATTATGGTCTCAAAGTCGTATTCCATGG 1612
Query 1660 CTTGCGATATATGTGAAGAGGTGGTGTGTGGAAAAGACAAGACCATACATATGTCATCGC 1719
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1613 CTTGCGCTATATGTGAAGAGAAGGTGTGTGGAAAAGACAAGACCATACATATGTCATCGC 1672
Query 1720 TTAGGCTTTCAACATTTGTGTATCGTCTGATCAATGAAAGCTCACTTGTTTCATGTGTGG 1779
||| |||| ||||||||||| | |||||||||||| |||||||||||||||||||| |||
Sbjct 1673 TTATGCTTGCAACATTTGTGGAGCGTCTGATCAATCAAAGCTCACTTGTTTCATGTTTGG 1732
Query 1780 TGTGTAAAGATGTATATCATCCATTGTGTCTGGAAGTT-AACAGGCAAATGAGATTCTGT 1838
|||| |||||||||||||||| ||||| |||||||| || |||||||| ||||||| |
Sbjct 1733 AGTGTGAAGATGTATATCATCCCCTGTGTGTGGAAGTTGAA-AGGCAAATAAGATTCTAT 1791
Query 1839 CATCCAATTCATCCTGATCACTACCTTCC-GCTTTCATTTGTAAGTGGATCCAAGTGCCT 1897
|||||| |||||||||||||| ||||| | ||||||||||||||||||||||||||
Sbjct 1792 CATCCACTTCATCCTGATCACAACCTTAGAG-TTTCATTTGTAAGTGGATCCAAGTGCAG 1850
Query 1898 AGCCTGCAAGCTGGAAATTAAAAAGTATGGCTATCATTGTTCCACTTGC-AACATCAGTT 1956
|||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1851 AGCCTGCAGGCTGGAAATTAAAAAGTATGGCTATCATTGTTCCACTTGCGAA-ATCAGTT 1909
Query 1957 TCCATATTAAATGCAGCAAAGCGGTAATATTTCCACAACAGA-CAT-C-TCACAACCACC 2013
||||||||||||||| |||||| |||| ||| ||| || ||| || | ||||| ||||
Sbjct 1910 TCCATATTAAATGCATCAAAGCTGTAAGATTGCCAAAAGAGATCAAGCCTCACAGCCACT 1969
Query 2014 GTTTCTATCACTTTTGGATTGCTGACTCGAAGATCACTCGAACCTGCCGTGTGTGCGCTA 2073
|||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1970 ATTTCTATCACTTCTGGATTGCTGACTCGACGATCACTCGAACTTGCCGTGTGTGCGCTA 2029
Query 2074 AACCGTGCGGTGTCTCGTTCTACGGATGTATTGGGTGCGACTTCAACGCCCATGCAGAGT 2133
|||||||||||| |||||||||||||||||| | || ||||||||||||||||| ||||
Sbjct 2030 GACCGTGCGGTGTGTCGTTCTACGGATGTATTAGTTGTGACTTCAACGCCCATGCGGAGT 2089
Query 2134 GTATTGCGTTTCCAGACAA-TGTGAAGAACCAAAAACATGAGCATACT-T--TG-AAGCT 2188
|||||| ||||||| ||| ||||||||||||||||||| |||||||| | || |||
Sbjct 2090 GTATTGGGTTTCCAT-CAAATGTGAAGAACCAAAAACATCAGCATACTCTCGTGGAAG-- 2146
Query 2189 AATAGGTAGTCGTTATTTCGAGCC-AGA-T-TGCTTTCTCTGTGGAGAGCGTATTGTGGG 2245
|| || || |||| ||| | ||| || | |||| |||||||||||| |||| | |||
Sbjct 2147 AA-AG-TAATCGTG-TTT-G-GCCTAGTCTCTGCTCTCTCTGTGGAGAAAGTATCG-GGG 2200
Query 2246 T-A--AAT-T-C--GGAA-AAA--GCTCCAATGTGCTTTATTCATGCAAGCACTGTGGCA 2295
| | || | | |||| ||| ||||||||||| ||||||||||||| ||||||||
Sbjct 2201 TTAGGAAACTACACGGAAGAAAATGCTCCAATGTGTTTTATTCATGCAAACACTGTGGTG 2260
Query 2296 AAGAGTTTCACCTCAAATGCATAATGTCTACGGATGACCGTGAAGCTGCAACAGAAGAGG 2355
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2261 ACGAGTTTCACCTCAAATGCATAATGTCTACGGATGACCGTGAAGCTGCAACAGAAGAGG 2320
Query 2356 ATCAATATGGAGACATATATCTTATGTACCTTGAGCGTCATCTCTTGGAGGTGTTATAAA 2415
|||||| ||||||||| ||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 2321 ATCAATTTGGAGACATCTATCTTATGTACCTTGAGCGTTATCTCTTGGAGCTGTTA-AAA 2379
Query 2416 AG 2417
||
Sbjct 2380 AG 2381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100101163860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5