BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21860.1
Length=1656
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481048 jgi|Araly1|481048|fgenesh2_kg.4__108__AT2G21860.1 2207 0.0
> Ahg481048 jgi|Araly1|481048|fgenesh2_kg.4__108__AT2G21860.1
Length=1617
Score = 2207 bits (1195), Expect = 0.0
Identities = 1460/1586 (92%), Gaps = 26/1586 (2%)
Strand=Plus/Plus
Query 18 GGCGATTCCTCTCAAAGCTCCTTCTCTTCCTGGAACGAGAGAGTGTTCTCCCTTCCTTAA 77
||||||| || ||||||||||||||||| | ||||||||||||| |||| ||||||||||
Sbjct 3 GGCGATTTCTATCAAAGCTCCTTCTCTTTCGGGAACGAGAGAGTCTTCTTCCTTCCTTAA 62
Query 78 CCGGTTCGTCACTCATCAACCGGTTAATTT-CATCCGGAAGTTTCATCCTTCCTTAGATG 136
|||||| ||||||| |||||||| | ||| | | | | ||| || || || | |
Sbjct 63 CCGGTTTGTCACTCGTCAACCGG--ATTTTGC-TAC-G--GTTAAATTCTACC---G--G 111
Query 137 AAGCATCGTTC-T-C-CAG-ACG-GGGA-CG--AACCACTGTT-GTTCGCGTTTTGGAGA 187
|||| ||| || | | | | | | || ||| |||| | ||| ||||||||||
Sbjct 112 AAGCCTCG-TCTTGCTTTGAATGACAAATCGTTCTCCATTGTTCGCTCG-GTTTTGGAGA 169
Query 188 CGGAGAAGAGTACGAAAATAGAGAAGCCTGAGCCTCCGGTGAAATTGATTGCTCTCGTCG 247
| |||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||
Sbjct 170 CTGAGAAGAGTACGAAGATAGAGAATCCTGAGCCTCCGGTGAAATTGATTTCTCTCGTCG 229
Query 248 GAAAAGGAGA-AGTAAGCCCACTCAAATCCACCTCTTGGGAAGAAGTTATGCTCCACACT 306
| |||||| | | |||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 230 GTAAAGGA-ACACTAAGCCCACTCAAATCCACCTCCTGGGAAGATGTTATGCTCCACACT 288
Query 307 GCGAGAAGATTGAAATGGGTTGATGAAGGATATGAAATGCTCGTCTTTGATGATGAAATT 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 GCGAGAAGATTGAAATGGGTTGATGAAGGATATGAAATGCTCGTCTTTGATGATGAAATT 348
Query 367 GTGAGTTCAAATGATCAGAGAGCTATGAATCTGACACAGGAACTGAATCAGACTGATATC 426
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 349 CTGAGTTCAAATGATCAGAGAGCTTTGAATCTGAAACAGGAACTGAATCAGACTGATATC 408
Query 427 TTGGTTGTCGTTGCTGTTAATAACTCAGAATCTGTGAATTGGATTCAGACTAACAGCAAA 486
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 409 TTGGTTGTTGTTGCTGTTAATAACTCAGAATCTGTGAATTGGATTTTGACTAACAGCAGA 468
Query 487 AACGTCAAGAACATGATTTGCTTTGAGTCTTCTCCAAATTTGATGAACAGGCTTGGAGGG 546
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 469 AATGTCAAGAACATGATTTGCTTTGAGTCTTCTTCAAATTTGATGAACAGGCTTGGAGGG 528
Query 547 ACTGATGTTGGAAGTGTGAATAAAGATAAAGAAGTAACAGAGGTTGTGAAGACAGTGGGA 606
|||||| |||||||||||||| |||||||| |||||||||||||||||||||| || |||
Sbjct 529 ACTGATATTGGAAGTGTGAATCAAGATAAACAAGTAACAGAGGTTGTGAAGACTGTAGGA 588
Query 607 GATGCTTGGGAACGTCGTAACTCTGATGATATAAGGTTTTGTTTGCTCGTGATCATCAAC 666
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 589 GATGCTTGGGAACGTCGTAATTCTGATGATATAAGGTTTTGTTTGCTTGTGATTATCAAT 648
Query 667 GCTTATATAAGACCAGTTCCTGTGTTGCAAAACTTGAGGTCCAAAGGTTTTTCGACGCTT 726
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |||
Sbjct 649 GCTTATATAAGACCAGTTCCTGTGTTGCAGAACTTGAGGTCCAAAGGGTTTTCTACCCTT 708
Query 727 AGTTGCATGGTTAAAAACTGTGGACCTCAGATTTTGAACTGTCTTTTGGATCCGAATTGT 786
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 ACTTGTATGGTTAAAAACTGTGGACCTCAGATTTTGAACTGTCTTTTGGATCCGAATTGT 768
Query 787 CGAAAAGCTCTTCAGTGTTTGAACCAATGTAGTCCTGTGGATCAGGTGTGTAGCTACAGG 846
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 CGAAAAGCTCTTCAGTGTTTGAACCAATGTAGTCCTGTGGATCAGGTGTGTAGCTACAGA 828
Query 847 TGCATTGCTTCTTATGAGGGTCCTTACTTTGAAGCGTTCTCTCTTTGTGTACTACAGAAG 906
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 829 TGCATTGCTTCTTATGAGAGTCCTTACTTTGAAGCATTCTCTCTTTGTGTACTACAGAAA 888
Query 907 CACAATTGTTTAGAACTGGATGCAAAGATCCCTGAGAAGCCTTATGTGCCTCCCATGACG 966
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CACAATTGTTTAGAATTGGATGCAAAGATCCCTGAGAAGCCTTATGTGCCTCCCATGACG 948
Query 967 AGTTTTCGAGGGAAGGAGTTGTGTCATGATACAGCGGAAGACTTGTTTGTTGGGTGGTTA 1026
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 949 AGTTTTCGAGGGAAGGAGTTGTGTCATGATACAGCAGAAGACTTGTTTGTTGGATGGTTA 1008
Query 1027 GGGGAATTGGAATGGAGCTGGCGTGTCGTGGCTGGACAAAACCCGGCTTATGATCAGTTT 1086
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GGGGAATTGGATTGGAGCTGGCGTGTCGTGGCTGGACAAAACCCGGCTTATGATCAGTTT 1068
Query 1087 CCATGTCAGTACCAGCTATTCTACAGAGGGAAAGGGAAGTCGTCGTTTTGGTATGAGCCC 1146
||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| |||
Sbjct 1069 CCATGTCAGTACCAGCTTTTCTACAGAGGGAAAGGGAAGTCGGCTTTTTGGTATGAACCC 1128
Query 1147 GTGTTTCAGGTCAGGACGCTCGAAGAGAAGTTGGTGTGGAGAAGGAGAAGATACTCGGTT 1206
|||||||||||||| ||||| ||||||||| | |||||||||||||| ||||||||||||
Sbjct 1129 GTGTTTCAGGTCAGAACGCTTGAAGAGAAGCTAGTGTGGAGAAGGAGGAGATACTCGGTT 1188
Query 1207 AAGCGAGGAAAGATCCCTGCAACGTTTCGTTTCAGTGTTTTGGACAATGGTGTGGTGTCA 1266
||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1189 AAGAGAGGAAAGATCCCTGCAACATTTCGTTTCAGCGTTTTGGACAATGGTGTGGTGTCG 1248
Query 1267 AATGAGTTTTGGACTATTGTGGATGTATCTGATGATCTAAGTTGGGGACTGTTCCATTAC 1326
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1249 AATGAGTTTTGGACTATTGTTGATGTATCTGATGATCTAAGTTGGGGACTGTTCCATTAC 1308
Query 1327 CATGGAGCAGCACGTGTAGCAGGACAGTCTTACACCGGAGCTGTGCTTGTGACACCGGAT 1386
||||||| || ||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1309 AATGGAGCGGCTCGTGTTGCAGGACAGTCTTACACCGGGGCTGTGCTCGTGACACCGGAT 1368
Query 1387 GGTTCTTACCCGGCAGAGAAGGACAAGGAGAGATTGCAGTCAGCATTGGAGAAATGTGGG 1446
||||| ||||||||||||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct 1369 GGTTCCTACCCGGCAGAGAAGGAAAAGGAGAGATTGAAGTCTGCATTGGAGAAATGTGGG 1428
Query 1447 ATTAAGGAATGGGAACTCTTTGCTGTTGATAATTGTTCTTGTGAAAACCCGCCGCTAGGG 1506
|||||||| |||||||||||| ||||||| ||||||||||| ||||| ||||| | |||
Sbjct 1429 ATTAAGGAGTGGGAACTCTTTACTGTTGACAATTGTTCTTGCGAAAATCCGCCATTGGGG 1488
Query 1507 ATTCCACAGGGTTCTAGACTTCATTCGAGAATCAGTATCATAGAGGAACCAGACTCGGAA 1566
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1489 ATTCCACAAGGCTCTAGACTACATTCGAGAATCAGTATCATAGAGGAACCAGACTCGGAA 1548
Query 1567 GAAAAATTCAACTAATTTTGCACTGT 1592
|||||||||||||||||||||| |||
Sbjct 1549 GAAAAATTCAACTAATTTTGCA-TGT 1573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62087099350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5