BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21870.1
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932129 jgi|Araly1|932129|scaffold_400117.1 1286 0.0
> Ahg932129 jgi|Araly1|932129|scaffold_400117.1
Length=765
Score = 1286 bits (696), Expect = 0.0
Identities = 733/751 (98%), Gaps = 1/751 (0%)
Strand=Plus/Plus
Query 96 CGACTCGATTCGATCAAGGAAATGGCGTACGCTTCTCGTTTTCTCTCCAGATCTAAGCAG 155
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1 CGACTCGATTCGATCAA-GAAATGGCTTACGCTTCTCGTTTCCTCTCCAGATCTAAGCAG 59
Query 156 CTACAGGGGGGTCTGGTCATTTTGCAGCAGCAACATGCTATTCCAGTCCGAGCTTTTGCT 215
|||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTACAAGGGAGTCTGGCCATTTTGCAGCAGCAACATGCTATTCCAGTCCGAGCTTTTGCA 119
Query 216 AAGGAAGCTGCTCGTCCAACCTTTAAAGGAGATGAGATGTTGAAGGGTGTCTTTTTTGAT 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AAGGAAGCTGCTCGTCCAACCTTTAAAGGAGATGAGATGTTGAAGGGTGTCTTTTTTGAT 179
Query 276 ATCAAGAACAAATTCCAGGCTGCTGTTGATATTCTCCGTAAGGAAAAGATCACCCTTGAT 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATCAAGAACAAATTCCAGGCTGCTGTTGATATTCTCCGTAAGGAAAAGATCACCCTTGAT 239
Query 336 CCAGAGGACCCAGCTGCCGTAAAACAGTATGCAAATGTAATGAAGACCATCAGGCAAAAG 395
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 240 CCAGAGGACCCAGCTGCGGTAAAACAGTATGCTAATGTAATGAAGACCATCAGGCAAAAG 299
Query 396 GCAGACATGTTCTCAGAATCTCAGCGCATTAAACATGACATTGATACTGAGACTCAAGAC 455
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 300 GCAGACATGTTCTCAGAATCCCAACGCATTAAACATGACATTGATACTGAGACTCAAGAC 359
Query 456 ATTCCAGATGCTCGTGCATACTTGTTGAAGTTGCAGGAAATTCGCACCAGGAGGGGGCTT 515
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 ATTCCAGATGCTCGTGCATACTTGTTGAAGTTGCAGGAAATCCGCACCAGGAGGGGGCTT 419
Query 516 ACTGATGAGCTTGGTGCTGAGGCCATGATGTTCGAGGCTTTGGAGAAAGTCGAGAAGGAC 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 420 ACTGATGAGCTTGGTGCTGAGGCCATGATGTTCGAGGCTTTGGAGAAAGTCGAGATGGAC 479
Query 576 ATAAAGAAGCCTCTCCTGAGAAGTGACAAGAAAGGAATGGATCTTTTGGTTGCAGAGTTT 635
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 480 ATAAAGAAGCCTCTCCTGAGAAGCGACAAGAAAGGAATGGATCTTTTGGTTGCAGAGTTT 539
Query 636 GAGAAAGGCAACAAAAAGCTTGGGATTAGGAAAGAAGATCTTCCTAAGTACGAAGAAAAT 695
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 540 GAGAAAGGCAACAAAAAGCTTGGGATTAGGAAAGAAGATCTTCCTAAGTACGAGGACAAT 599
Query 696 TTGGAGCTCAGCATGGCCAAAGCACAGTTGGATGAGCTGAAGAGTGATGCTGTTGAAGCT 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGGAGCTCAGCATGGCCAAAGCACAGTTGGATGAGCTGAAGAGTGATGCTGTTGAAGCT 659
Query 756 ATGGAATCTCAGAAAAAGAAGGAGGAATTCCAGGATGAGGAAATGCCGGACGTGAAGTCT 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATGGAATCTCAGAAAAAGAAGGAGGAATTCCAGGATGAGGAAATGCCGGACGTGAAGTCT 719
Query 816 CTAGACATCCGTAACTTCATCTAAGGTTTGA 846
|| ||||||||||||||||||||||||||||
Sbjct 720 CTGGACATCCGTAACTTCATCTAAGGTTTGA 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40982135775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5