BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21880.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481052 jgi|Araly1|481052|fgenesh2_kg.4__112__AT2G21880.1 1476 0.0
> Ahg481052 jgi|Araly1|481052|fgenesh2_kg.4__112__AT2G21880.1
Length=1008
Score = 1476 bits (799), Expect = 0.0
Identities = 964/1038 (93%), Gaps = 34/1038 (3%)
Strand=Plus/Plus
Query 12 ttttttCCTCCCAGAAGACAGAAGAAGAAGCAAGATCATCAAGACCAATCTCGTAGACTT 71
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 TTTTTTCCTCCCAGAAGACAGAAGAAGAAGCAAGATCATCCAGACCAATCTCGTAGACTT 60
Query 72 CTTGTCTCTGTCCAAAAACCATAAAGAAACTTTATTGGCATAAAAA-GAGAACAATCTCG 130
|||||||||||||||||||| ||||||||||| |||| | ||||| |||||||||||||
Sbjct 61 TTTGTCTCTGTCCAAAAACCAGAAAGAAACTTTCTTGGTAAAAAAAGGAGAACAATCTCG 120
Query 131 TAGATTCTTGAGCTTCTGACAATGGATTCTTTGAAGAATAGAACATTGCTTAAGGTCATT 190
|||| || | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TAGA---TT---C-T-TGACAATGGATTCTTTGAAGAATAGAACATTGCTTAAGGTCATT 172
Query 191 GTTCTTGGAGATAGCGGGGTAGGCAAAACTTCATTGATGAATCAATATGTGTACAAGAAA 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 GTTCTTGGAGATAGCGGGGTAGGCAAAACTTCATTGATGAATCAATATGTGTACAAGAAA 232
Query 251 TTTAACAAGCAATATAAGGCTACGATCGGAGCAGATTTCGTCACCAAAGAGCTTCATATA 310
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 233 TTTAACAAGCAATATAAGGCCACGATCGGAGCAGATTTCGTCACCAAAGAGCTTCACATA 292
Query 311 GATGAAAAATCTGTCACTTTACAGATATGGGATACCGCTGGACAAGAGAGATTTCAAAGT 370
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 293 GATGAAAAATCTGTCACTTTACAGATATGGGATACTGCAGGACAAGAGAGATTTCAAAGT 352
Query 371 CTAGGGGCCGCGTTCTATAGAGGTGCTGATTGTTGCGTTCTTGTCTACGACGTGAACAAT 430
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 353 CTAGGGGCCGCATTCTATAGAGGTGCTGATTGTTGCGTTCTTGTGTACGATGTGAACAAT 412
Query 431 CTCAAATCTTTTGAAACTCTCAATAACTGGCACACAGAGTTCCTCAAACAGGCAAATCCT 490
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 413 CTCAAATCTTTTGAAACTCTCAATAACTGGCACACAGAGTTCCTCAAACAGGCAAACCCT 472
Query 491 ATGGAACCGGAGACATTTCCCTTTGTTTTGATCGGGAACAAGACCGATGTAGATGGCGGA 550
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 473 ATGGAACCGGATACATTTCCCTTTGTTTTAATCGGGAACAAGACCGATGTAGATGGCGGG 532
Query 551 AACAGCCGAGTTGTTTCAAATAAGAGAGCCATCGAGTGGTGTGGCTCAAAGGGAAACATA 610
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 533 AACAGCCGAGTTGTTTCAAATAAGAGAGCCATCGAGTGGTGTGGCTCAAAGGGGAACATA 592
Query 611 CCGTACCATGAAACCTCTGCGAAGGAAGATACCAATATCGATGAAGCTTTTTTGAGTGTT 670
| |||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||
Sbjct 593 CTGTACCATGAAACCTCTGCGAAGGATGATACCAATGTCGATGAAGCTTTTTTGGGTGTT 652
Query 671 GCACACATTGCTCTCTCTAATGAACGTAAACAAAGCAATGACATATATCCTAGAGGCCAG 730
||||||||||||||| | |||||||||||||||| |||||||||||||||||||||| |
Sbjct 653 GCACACATTGCTCTCGCCAATGAACGTAAACAAACCAATGACATATATCCTAGAGGC--G 710
Query 731 TATCATGACTCTGTTACGGATATTATTGATCCAGATCAGTCAAGAGGTTGTGCTTGCTGA 790
||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 711 TAT-ATGACTCTGTTACGGATATTATTGACCCAGATCAGACAAGAGGTTGTGCTTGCTGA 769
Query 791 TTCCATGTTTGACATATCTGATCAAATAATATCGAGTCCCAGCTCTTTCATTTGCAGTCC 850
||| || ||| |||||||||||||| |||||||||||||||||||||| |||| |||||
Sbjct 770 TTC-ATATTTAACATATCTGATCAA-TAATATCGAGTCCCAGCTCTTTTATTTTCAGTCT 827
Query 851 TTGTTTTTGGTAACtttttttCTATTTATTGGTTTAATAATATCATTTATAGAG-G--TT 907
||||||||||||||||||||| |||||||||||||||| | ||||||||||| | ||
Sbjct 828 TTGTTTTTGGTAACTTTTTTT--ATTTATTGGTTTAATA-T--CATTTATAGAGAGGGTT 882
Query 908 TATTAACGACAAAAAACAGTTGATACATACTACTTTCTGAGTGTTTTGATTCATGTAAAG 967
||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 883 TATTAAC------------TTGATATATGCTACTTTCTGAGTGTTTTGATTCATGTAAAG 930
Query 968 CATTAATTAATTTCTATTTAATTTTTGTAAACCTTTTCGTTGAGATAACTTATAGTACCA 1027
||||||||| ||| |||||||||| |||||| ||||||||||||| ||||||| ||||||
Sbjct 931 CATTAATTACTTTATATTTAATTTCTGTAAAACTTTTCGTTGAGACAACTTATTGTACCA 990
Query 1028 TCACCGAATCACTTGGAT 1045
||||||||||||||||||
Sbjct 991 TCACCGAATCACTTGGAT 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5