BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21900.1
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320036 jgi|Araly1|320036|fgenesh1_pm.C_scaffold_4000093 881 0.0
> Ahg320036 jgi|Araly1|320036|fgenesh1_pm.C_scaffold_4000093
Length=609
Score = 881 bits (477), Expect = 0.0
Identities = 569/613 (93%), Gaps = 8/613 (1%)
Strand=Plus/Plus
Query 1 ATGAACTATCCTTCAAACCCTAACCCTAGCTCCACAGATTTCACTGAATTTTTCAAGTTC 60
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAATTACCCTTCAAACCCTAACCCTAGTTCCACAGATTTCACTGAATTTTTCAAGTTC 60
Query 61 GATGATTTTGACGATACTTTTGAG-AAGATCATGGAAGAAATCGGCCGTGAGGACCA-C- 117
||||||||||||||||||||| | | |||||||||||||||||||||||||||||| |
Sbjct 61 GATGATTTTGACGATACTTTT-CGCATGATCATGGAAGAAATCGGCCGTGAGGACCACCA 119
Query 118 -TCGTCGTCACCGACTTTGAGTTGGAGTTCATCGGAAAAGTTAGTGGCTGCAGAAATCAC 176
|| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 120 ATCTTCGTCACCGACTTTGAGTTGGACTTCATCGGAAAAGTTAGTGGCCGCAGAAATCAC 179
Query 177 AAGCCCGCTTCAAACAAGCCTAGCTACCTCACCTATGAGCTTTGAAATAGGTGACAAAGA 236
|||||||||||||| || || ||||||||||||||||||| |||||||||||||||||||
Sbjct 180 AAGCCCGCTTCAAATAAACCAAGCTACCTCACCTATGAGCCTTGAAATAGGTGACAAAGA 239
Query 237 TGAAATCAAAAAGAGGAAGAGACACAAAGAAGATCCGATTATTCACGTCTTCAAAACGAA 296
||| | |||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
Sbjct 240 TGAGACCAAAAAGAGGAAGAGACACAAAGACGATCCGATTCTTCACGTGTTCAAAACG-A 298
Query 297 ATCATCAATTGATGAAAAGGTTGCTTTAGATGATGGGTATAAATGGAGGAAATACGGAAA 356
| |||| ||||| |||| ||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 299 A--ATCAGTTGATCAAAAAGTTGCTTTAGATGATGGATATAAATGGAGGAAGTACGGCAA 356
Query 357 GAAGCCGATAACGGGTAGTCCATTTCCAAGGCATTATCACAAGTGTTCGAGCCCAGATTG 416
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 357 GAAGCCGATAACGGGTAGTCCATTTCCAAGGCATTATCACAAGTGTTCGAACCCAGATTG 416
Query 417 CAACGTGAAGAAGAAGATCGAAAGAGATACGAACAATCCAGATTACATATTGACAACATA 476
||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||
Sbjct 417 CAACGTGAAGAAGAAGATCGAGAGAGATACCAACAATCCAGATTACGTATTGACAACGTA 476
Query 477 CGAAGGTAGACATAACCACCCAAGCCCTTCTGTAGTTTATTGTGATTCAGACGACTTTGA 536
|||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 477 CGAAGGAAGACATAACCACCCAAGCCCTTCTGTGGTTTATTGTGACTCAGACGACTTTGA 536
Query 537 TCTTAACTCTCTCAACAATTGGTCCTTTCAGACGGCAAATACGTATAGTTTCTCTCATTC 596
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 537 TCTTACCTCTCTCAACAATTGGTCCTTTCAGACGACAAATACGTATAGTTTCTCTCATTC 596
Query 597 TGCTCCATATTGA 609
||||| || |||
Sbjct 597 GGCTCCGTACTGA 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22263783528
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5