BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21930.1
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932137 jgi|Araly1|932137|scaffold_400125.1 1295 0.0
Ahg932133 jgi|Araly1|932133|scaffold_400121.1 322 5e-87
> Ahg932137 jgi|Araly1|932137|scaffold_400125.1
Length=1211
Score = 1295 bits (701), Expect = 0.0
Identities = 1039/1195 (87%), Gaps = 51/1195 (4%)
Strand=Plus/Plus
Query 1 CAGAGATCGAAG-A-A-GACGAAGATATCCGATGATCTAATTACATGCAGTGGAAACTCG 57
|||||||||||| | | || |||||| ||||||||||| || |||||||| | |||| |
Sbjct 30 CAGAGATCGAAGAAGATGAAGAAGATCTCCGATGATCTGATAACATGCAGAGCAAACCCA 89
Query 58 GTTCAGATTCCGTTTGATCTCATCCCGGAGATACTCAAAAGGTTACCTGTCAAAACCCTA 117
||||||||||||||||| || |||||||||||||||||| ||||||| ||||||||||||
Sbjct 90 GTTCAGATTCCGTTTGACCTAATCCCGGAGATACTCAAAGGGTTACCAGTCAAAACCCTA 149
Query 118 GCTAGGTTCCTCTC-CGTATCAAAAGAATATACTTCCATCATTCGCAACAGAGACTTCAT 176
|||||||||||||| | |||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 150 GCTAGGTTCCTCTCTC-TATCGAAAGAATATACTTCCATCATTCGCAACCGAGACTTCAT 208
Query 177 GAAATCGTACTTGATTAATTCTTCGACTCGCCCACAAAGTCTCATCTTTACAATCGCAGG 236
||||||||||||||| || |||||||||||||| |||||||||||||| |||||||| ||
Sbjct 209 GAAATCGTACTTGATCAAGTCTTCGACTCGCCCGCAAAGTCTCATCTTCACAATCGCTGG 268
Query 237 CGGC-GGAATCCATTGCTTCTTCTCCTTGATTGATCAAGGTGAATCAACTTCGTCTTCTA 295
| | |||| |||||||||||||| ||| |||||||||||||||||||||| ||||||
Sbjct 269 CAACGGGAA-GCATTGCTTCTTCTCATTGCTTGATCAAGGTGAATCAACTTCATCTTCTG 327
Query 296 AACCAACTTACCTTATGAATTGCCCTCATCTACAGCTTAAAACCTTTGCTCCTTCTGTTC 355
||||||||||||||||||||||| |||| | ||| |||| |||||||||||||||
Sbjct 328 TACCAACTTACCTTATGAATTGCCAGGATCT--A-TTTAGAACCGTTGCTCCTTCTGTTC 384
Query 356 ACGGTTTGATTTGCCATGGACCTCCTTCTACACTAATAGTGTCTAGCCCTAGACTAATAG 415
||||| |||||||||||||| | || | | | |||| | ||||||||
Sbjct 385 ACGGTCTGATTTGCCATGGA----C--CT-C-C------T-TCTA-----A-ACTAATAG 423
Query 416 TATCTAACCCTAGCACTAGACGATCCATTATCCTGCCCAAGATTGATGCTAATCA-TGAA 474
|||||||||||||||||||| |||||| ||||| |||||||||||| || | | || |
Sbjct 424 TATCTAACCCTAGCACTAGAAGATCCAAAATCCTTCCCAAGATTGATACTCA-GAGTGTA 482
Query 475 TGTATATACCACCATATGGGTTATGATCCTATTGATGGTGATTACAAAGTGTTGTGTATG 534
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TCTATATACCACCATATAGGTTATGATCCTATTGATGGTGATTACAAAGTGTTGTGTATG 542
Query 535 ATGAAAGGCATGCATGTT-TATCAGAGACGGTATTTAGCTAAGGAGCTTCAGGTTTTCAC 593
|| ||||||||||||||| || | |||||||||||||| ||||||||| |||||| ||
Sbjct 543 ATCAAAGGCATGCATGTTAAAT-GGGGACGGTATTTAGCTCAGGAGCTTCGGGTTTTGAC 601
Query 594 TTTGAGAAAAG-GGAATTCTTGGA-GGATGGTTGAAGATTTTCCTCCTCACTGTCTCTGT 651
|||||| |||| ||| |||||||| || || ||||||||||||||||||||||||| |||
Sbjct 602 TTTGAG-AAAGCGGACTTCTTGGATGG-TGATTGAAGATTTTCCTCCTCACTGTCTTTGT 659
Query 652 CATGAAGATACTCCTGATTTGTGTATCAATGGTGTTTTGTATTATGTAGCTATGCTCGAC 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 660 TATGAAGATACTCCTGATTTGTGTATCAATGGTGTTTTGTATTATGTAGCTATGCTTGAT 719
Query 712 ACAGCTTCGAATCATGCAGTCATGAGCTTTGATGTTAGATCTGAAAAGTTTGATCTTATT 771
||||| ||||||||||||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct 720 ACAGCCGCGAATCATGCAGTCATGAGTTTTGATGTTAGATCTGAAAAATTTCATCTTATT 779
Query 772 AAAGGAGGACCAGACGGGGACTTGAATCCAAAGCTGACACGCTACGAGGGAAAGCCTGCA 831
||||||||||||||| ||||| |||||||||||||||||| |||||||||||| ||
Sbjct 780 AAAGGAGGACCAGACCATGACTTCCGTCCAAAGCTGACACGCTATGAGGGAAAGCCTACA 839
Query 832 CTCCTGTTTCCTGGA-T--CTGATTATAGAATTAACTTGTGGGTTATAGAGGATGCTGCA 888
||||||||||||||| | |||||| ||||||| | ||||||||| ||| ||||||||||
Sbjct 840 CTCCTGTTTCCTGGAATTGCTGATTGTAGAATTCATTTGTGGGTTCTAGTGGATGCTGCA 899
Query 889 AAACACGAATGGTCCAAGATGTCTTATGATGTTTCGTCTACTTCACTAATTCGCAATCCT 948
||||| |||||||||||||||||||||||||||| |||||| |||| ||| || ||||
Sbjct 900 AAACATGAATGGTCCAAGATGTCTTATGATGTTTTGTCTAC---ACTAGTTCACAGTCCT 956
Query 949 TACTTTCATCATTGTGTCTTTTGTACTAATGATGCAGGGGAGATTGTTTTGGCACCCGAC 1008
||||||||||| | | |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 957 TACTTTCATCACTATCTCTTTTGTACTAATGATGCAGGGGAGATTGTTTTGGCACCTGAC 1016
Query 1009 TTTGTGCGTACAAAAACATTTGTTGTTCT-TTATTATCATCCAAAGAAAAATACTATGAG 1067
| ||||||| |||||||||||| ||||| || |||||||||||||||||| ||||||||
Sbjct 1017 TATGTGCGTTCAAAAACATTTGAAGTTCTCTT-TTATCATCCAAAGAAAAAAACTATGAG 1075
Query 1068 AAGTGTCGTCAT-CAAAGGAATCAGAGATCGAAAGATTCCACTTTGGGATGAGGCTTC-A 1125
|||||| ||||| ||| ||||||||||| | || | |||| | |||||| ||| | | |
Sbjct 1076 AAGTGTGGTCATACAA-GGAATCAGAGAACTAATGGTTCCGCGTTGGGACAAGGAT-CGA 1133
Query 1126 TACCATAGGATAATCTCGGTCTTCTCTGGCCAGGTTGATAATCTCATGTTTCTCT 1180
|| | | | |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1134 TATCTTCGTATAATCTCCGTCTTCTCTGGTCAGGTTGATAATCTCATGTTTCTCT 1188
> Ahg932133 jgi|Araly1|932133|scaffold_400121.1
Length=1214
Score = 322 bits (174), Expect = 5e-87
Identities = 409/517 (79%), Gaps = 38/517 (7%)
Strand=Plus/Plus
Query 421 AACCCTAGCACTAGACGATCCATTA-TCCTGCCCAAGATTGATGCT-AATC-ATGAATGT 477
||||||||||||||||||||||||| || | |||||||||||| || || || |||
Sbjct 448 AACCCTAGCACTAGACGATCCATTACTCTT-CCCAAGATTGATTCTCAAAGGATTAAT-- 504
Query 478 ATATACCAC--CATATGGGTTATGATCCTATTGATGGTGATTACAAAGTGTTGTGTATGA 535
|| |||||| | || || ||||||||| || |||||||||||||||| ||||||||||
Sbjct 505 ATGTACCACTTCCTA-GG-TTATGATCCCATCCATGGTGATTACAAAGTTTTGTGTATGA 562
Query 536 T-GAAAGGCATGCATGTTTATCAGAG-ACG-G-TATTTAGCT-AAGGAGCTTCAGGTTTT 590
| || |||||||||||| | || ||| | ||| ||| ||| |||||| ||||||
Sbjct 563 CAGTT-GGAATGCATGTTTATAA-AGGACGTGGTATG--GCTCAAG-AGCTTCGGGTTTT 617
Query 591 CACTTTGAGAAAAGGGAATTCTTGGAGGATGGTTGAAGATTTTCCTCCTCACTGTCTCTG 650
|||||| |||| ||||||||||||||| || ||||||||||||||||||| | ||| ||
Sbjct 618 GACTTTGGGAAATGGGAATTCTTGGAGGTTGATTGAAGATTTTCCTCCTCATTTTCT-TG 676
Query 651 -TCATGAAGATACTCCTGATTTGTGTATCAATGGTGTTTTGTATTATGTAGCTATGCTCG 709
| || | || |||||||| | ||||||||||||||||||||||||| |||| ||||||
Sbjct 677 ATTATCATTATTCTCCTGATATATGTATCAATGGTGTTTTGTATTATGGAGCTCTGCTCG 736
Query 710 ACACAGCTTCGAATCATGCAGTCATGAGCTTTGATGTTAGATCTGAAAAGTTTGATCTTA 769
||| | ||| || ||||||||||| |||||||||| ||||||||| ||| ||| ||
Sbjct 737 ACATAAAG-CGAC-CA-GCAGTCATGAGTTTTGATGTTAAATCTGAAAAATTTCATCATA 793
Query 770 TTAAAGGAGGACCAGACGGGGACTTGAATCCAAAGCTGACACGCTACGAGGGAAAGCCTG 829
|||||||| |||||| | |||||| ||||||||||| | ||| | | ||||||| ||
Sbjct 794 TTAAAGGA---CCAGACTGTGACTTGCGTCCAAAGCTGAAAAGCTTCAACGGAAAGCTTG 850
Query 830 CA-CTCCTGTT-TCCTGGATCTGATTATAGAATTAACTTGTGGGTTATAGAGGATGCTGC 887
| | |||||| || | | || || | || || | ||||||| | |||||||||||||
Sbjct 851 TAGC-CCTGTTCTC-T--A-CTAATGGTGGATTTGAGTTGTGGGCTCTAGAGGATGCTGC 905
Query 888 AAAACACGAATGGTCCAAGATGTCTTATGATGTTTCG 924
||||| |||||| | |||| || | || |||||||
Sbjct 906 GAAACATGAATGGGCAAAGAAGT-T-ATT-TGTTTCG 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55687938190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5