BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21940.4
Length=1542
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320039 jgi|Araly1|320039|fgenesh1_pm.C_scaffold_4000096 1227 0.0
> Ahg320039 jgi|Araly1|320039|fgenesh1_pm.C_scaffold_4000096
Length=918
Score = 1227 bits (664), Expect = 0.0
Identities = 848/932 (91%), Gaps = 31/932 (3%)
Strand=Plus/Plus
Query 278 ATGGAAGCAGCTATTACTCAGAGGATTCAGTACCCATCATGGGTTGATTGTAGAAAAG-T 336
||||||||||||||| |||||||||||| ||||||||||||||||||||| || | || |
Sbjct 1 ATGGAAGCAGCTATTGCTCAGAGGATTCGGTACCCATCATGGGTTGATTGGAG-AGAGTT 59
Query 337 TGAGTGTAAGCCGCAGCGTGGTTCATTGCGGTATTCTCAGCAG-GTTAAGGTAGATAGAA 395
|||| | ||| ||| ||||||||||||||||||| |||||| | || |||| ||| | ||
Sbjct 60 TGAGGGGAAGTCGCTGCGTGGTTCATTGCGGTATCCTCAGC-GAGTGAAGGAAGAGAAAA 118
Query 396 GGTTTAGAGGTCTTTCTTTGGCTCGCTTGCAACCTGAAAGAAGAAATGATCAACGAAGAG 455
|||| ||||| ||| ||||||||| |||||||||| | ||| || || || ||||
Sbjct 119 GGTTCAGAGGCCTTGCTTTGGCTCATTTGCAACCTG--A-AAG-AA-GA--AA--AAGAT 169
Query 456 CAGTTTCTCCAGCGGTTTCCTGTTCTGATAACAATTCCTCAGGTGCGTTGTTGGAGACTG 515
|||||||| ||| ||||| |||||||||||||| || ||| |||||||||||| | |
Sbjct 170 CAGTTTCTTCAGAGGTTTTATGTTCTGATAACAACTCTTCA---GCGTTGTTGGAGGCAG 226
Query 516 GAAGTGTTTATCCATTTGATGAAGA--T-ATTCT-----C-A------AGAGAAAAGCAG 560
||||||||||||| ||||||||||| | ||||| | | |||||||||| |
Sbjct 227 GAAGTGTTTATCCGTTTGATGAAGATCTAATTCTCAAGGCAACTTTGCAGAGAAAAGCTG 286
Query 561 AAGAGGTTAAACCGTATTTGAATGGACGATCTATGTACCTTGTCGGAATGATGGGTTCTG 620
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 287 AAGAGGTTAAACCGTTTTTGAATGGACGATCTATGTACCTTGTTGGAATGATGGGTTCTG 346
Query 621 GGAAAACAACTGTGGGAAAGTTAATGTCCAAAGTGCTCGGTTATACGTTCTTTGACTGCG 680
|||||||||| |||||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct 347 GGAAAACAACCGTGGGAAAGTTAATGTCCAAAGTGCTTGGTTATTCCTTCTTTGACTGCG 406
Query 681 ACACTTTGATTGAACAGGCGATGAATGGAACTTCTGTTGCAGAGATATTTGTTCATCACG 740
||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 407 ACACTTTGATTGAGCAGGCGATGAATGGAACTTCTGTTGCAGAGATTTTTGTGCATCATG 466
Query 741 GAGAGAAtttttttAGAGGAAAGGAGACCGATGCGCTTAAGAAGCTCTCTTCGAGGTATC 800
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 467 GAGAGAATTTTTTTAGAGGAAAAGAGACCGATGCGCTTAAGAAGCTCTCTTCGATGTATC 526
Query 801 AAGTTGTTGTTTCCACAGGTGGAGGTGCAGTTATAAGACCCATTAACTGGAAGTATATGC 860
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 AAGTTGTTGTTTCCACCGGTGGAGGTGCAGTTATAAGACCCATTAACTGGAAGTATATGC 586
Query 861 ATAAAGGAATCAGCATTTGGCTAGATGTGCCTCTAGAAGCATTAGCCCATAGAATCGCTG 920
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 587 ATAAAGGAATCAGCATTTGGCTAGATGTGCCTCTAGAAGCCTTAGCCCATAGAATCGCTG 646
Query 921 CTGTTGGAACTGATTCACGACCACTGCTACACGATGAATCAGGAGATGCATACTCAGTGG 980
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 647 CTGTTGGAACTGGTTCACGACCACTGTTACACGATGAATCAGGAGATGCATACTCAGTGG 706
Query 981 CTTTCAAACGTCTCTCGGCTATTTGGGACGAGCGCGGTGAAGCATACACAAACGCAAATG 1040
||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||
Sbjct 707 CTTTCAAACGTCTCTCGACTATTTGGGATGAGCGCGGTGAAGCATACACAAATGCAAATG 766
Query 1041 CCAGAGTCTCCTTAGAAAATATTGCAGCAAAGCGTGGCTATAAAAATGTCTCAGATCTCA 1100
||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 767 CCAGAGTCTCCTTGGAAAATATTGCAGCCAAGCGTGGCTATAAAGATGTCTCAGATCTCA 826
Query 1101 CACCAACTGAAATTGCTATCGAGGCCTTCGAGCAAGTTCTGAGCTTTCTAGAGAAAGAAG 1160
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 827 CACCAACTGAAATCGCTATCGAGGCCTTTGAGCAAGTTCTGAGCTTTCTAGAGAAAGAAG 886
Query 1161 AAACTATGGAGATCCCAGACGGCGACCTCTAA 1192
||||||||||||||||||||||||||||||||
Sbjct 887 AAACTATGGAGATCCCAGACGGCGACCTCTAA 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57744811420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5