BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21950.1
Length=1472
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481060 jgi|Araly1|481060|fgenesh2_kg.4__120__AT2G21950.1 1772 0.0
> Ahg481060 jgi|Araly1|481060|fgenesh2_kg.4__120__AT2G21950.1
Length=1248
Score = 1772 bits (959), Expect = 0.0
Identities = 1078/1136 (95%), Gaps = 5/1136 (0%)
Strand=Plus/Plus
Query 2 ATGGCGGCTACAACGAGCTCCGGCGACGAACCACCGGAAACAAAATCACCGGCGCAATTG 61
||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 1 ATGGCGGCTACAACGAGCTCCGGCGACGACCCACCGGAAACGAAATCGCCGGCGCAATTG 60
Query 62 ATTCCGTTGTTATCAGAAGACGTTGCTCTCAGTTGCCTTGCTCGCGTCCCTAGATGTCAC 121
||||| || |||||||| ||||||||||| | |||||||||||||||| | |||||||||
Sbjct 61 ATTCCATTATTATCAGACGACGTTGCTCTGAATTGCCTTGCTCGCGTCTCAAGATGTCAC 120
Query 122 TATCCAATCCTCTCACTCGTCTCCAAGACTTTCCGATCTCTCCCAACATCACCTCTT-CT 180
|||| |||||||| |||||||||||||||||||||||||| |||||||| ||| || ||
Sbjct 121 CATCCGATCCTCTCTCTCGTCTCCAAGACTTTCCGATCTCTGCCAACATCGCCT-TTGCT 179
Query 181 CTACGCCACGAGAGCTCTCGTCGGAGCCACTGAAAACATCCTCTACGTAGCAATCCGTAT 240
||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| ||| |
Sbjct 180 CTACGCCACGAGATCTCTCGTCGGCGCCACTGAAAACATCCTCTACGTCGCAATTCGTTT 239
Query 241 ACCTCCTGAATCTGGTGCGTGTTGGTTCACTCTCCTCCATCGAACCTTATCGAA-CTCAA 299
||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 240 ACCTCCTGAATCTGGTGCGTGTTGGTTCACTCTTCTCCATCGAACCTTATC-AAGCTCAA 298
Query 300 CGAATTCGAAAATGCTTGTTCCAATCCCATCTTGTCCTTCACCGTCTCTAGTCGGATCCG 359
|||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |
Sbjct 299 CGAATTCGAAAATGCTTGTTCCAATCCCGTCTTGTCCTTCACCGTCTCTTGTTGGATCTG 358
Query 360 CTTACGTTGTGGTAGATTCAGAGATTTACGTGATCGGTGGATCTATTAGAGACGTGCCTT 419
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 359 CTTACGTTGTGGTAGATTCAGATATTTACGTGATCGGTGGATCTATCAGAGACGTACCTT 418
Query 420 CTTCGAGCGTGTGGGTTCTCGATTGCAGATTTCATACTTGGCGACGAGTCTCTAATATGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CTTCGAGCGTGTGGGTTCTCGATTGCAGATTTCATACTTGGCGACGAGTCTCTAATATGA 478
Query 480 GAGTAGGTCGTGAATTTGCAGCAGCTGGTGTAATTGATGGGAAGATTTATGTGATTGGAG 539
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 479 GAGTAGGTCGTGAATTTGCAGCAGCTGGTGTAATCGATGGGAAGATTTATGTGATTGGAG 538
Query 540 GATGTGTAGTTGATAATTGGGCTCGATCGATTAACTGGGCAGAGATGTTTGATATAAAGA 599
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 539 GATGTGTGGTTGATAATTGGGCTCGATCGATTAATTGGGCAGAGATGTTTGATATAAAGA 598
Query 600 CTCAAACTTGGGAGCCAGTGGCTAGTCCAGGTATGGAGGTTCGTGAGAAATGGATGCACG 659
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 599 CTCAAACTTGGGAGCCAGTGGCTAGTCCAGGTATGGAGGTGCGTGAGAAATGGATGCACG 658
Query 660 CAAGTGCGGTTATGGAAGGGAAGGTTTACGCAATGGCTGATCGAAACGGTGTTGTTTACG 719
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 659 CAAGTGCGGTTATGGAAGGGAAGGTTTACGCAATGGCTGATCGAAATGGTGTTGTTTACG 718
Query 720 AACCCAAGGAAAAGAAATGGGAGATGCCTGAGAAGAGGCTTGATTTGGGATGGAGAGGAA 779
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 719 AGCCCAAGGAAAAGAAATGGGATATGCCTGAGAAGAGGCTTGATTTGGGATGGAGAGGAA 778
Query 780 GAGCTTGTGTGATTGAGAACATATTGTATTGTTATGATTACTTGGGGAAGATTAGAGGGT 839
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GAGCTTGTGTGATTGACAACATATTGTATTGTTATGATTACTTGGGGAAGATTAGAGGGT 838
Query 840 ATGATCCAAAAGAGAGGATTTGGAGAGAGCTGAAAGGTGTGGAGTCACTTCCAAAGTTTC 899
||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 839 ATGATCCAAAAGAGAGGATTTGGAGAGAGCTTAAAGGTGTGGATTCACTTCCTAAGTTTC 898
Query 900 TTTGTGGGGCTACAATGGCTAATCGTGGTGGAAAGCTTACGGTTTTGTGGGAAGGTAAAG 959
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 899 TTTGTGGGGCTACAATGGCGAATCGTGGTGGAAAGCTTGCGGTTTTGTGGGAAGGTAAAG 958
Query 960 CTGGTAGTGGTGGTTCTAGGAGAATGGAGATTTGGTGTGCGGAGATTGATGTTGGAAGGC 1019
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 959 CTGGTAGTGGCGGTTCGAGGAGAATGGAGATTTGGTGTGCGGAGATTGATGTTGAAAGGC 1018
Query 1020 GTGGAGAAAGGGAGATTTGGGGAAAAATTGAATGGTCTGGTACCGTGCTTACGGTTCCTA 1079
|||||||| ||||||||||||| || || | ||||||||||||||||||||||||||||
Sbjct 1019 GTGGAGAAGGGGAGATTTGGGGGAAGATCGTGTGGTCTGGTACCGTGCTTACGGTTCCTA 1078
Query 1080 ATGAATCTGCCATTGTGAATTGCTTGGCAGCTACAGTTTGATGATGATGCATACAT 1135
||||||| ||||||||||||||||||||||||||||||||||| |||| ||| |||
Sbjct 1079 ATGAATCCGCCATTGTGAATTGCTTGGCAGCTACAGTTTGATGGTGATTCAT-CAT 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55078494270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5